Ubiquitin carboxyl-terminal hydrolase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G14400 |
| fragaria_vesca | FvH4_3g16490 FvH4_3g16490 FvH4_3g16490 FvH4_3g16490 |
| malus_domestica | MD05G1209600.v1.1 MD10G1195900.v1.1 |
| prunus_persica | Prupe.4G147900_v2.0.a1 |
| pyrus_communis | pycom05g19560 pycom10g16950 |
| rosa_chinensis | RchiOBHm_Chr5g0027541 |
| rosa_laevigata | RLG00000033025 |
| rosa_multiflora | Rmu_co8326735.1_g000001 Rmu_co8467017.1_g000001 Rmu_sc0004493.1_g000008 Rmu_sc0007802.1_g000039 Rmu_sc0011056.1_g000009 |
| rosa_roxburghii | Rroxscaffold_1G00052000 Rroxscaffold_1G00052020 |
| rosa_rugosa | Rorug05G0099400 Rorug05G0099500 Rorug05G0099600 |
| rosa_samantha | Rh5AG193700 Rh5BG191700 Rh5CG211900 Rh5DG193400 Rh5DG193600 |
| rosa_wichuraiana | Rw5G017660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1181 |
| AatII | GACGTC | 1 cut(s) | 1275 |
| Acc36I | ACCTGC | 1 cut(s) | 3017 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2671 |
| AccBSI | CCGCTC | 1 cut(s) | 1566 |
| AccI | GTMKAC | 1 cut(s) | 1354 |
| AccII | CGCG | 2 cut(s) | 16, 1527 |
| AclWI | GGATC | 4 cut(s) | 1587, 2204, 2217, 2683 |
| AcoI | YGGCCR | 4 cut(s) | 1116, 1298, 1774, 2014 |
| AcsI | RAATTY | 3 cut(s) | 972, 1670, 2514 |
| AcuI | CTGAAG | 4 cut(s) | 1418, 1739, 2856, 2880 |
| AcyI | GRCGYC | 2 cut(s) | 1272, 1977 |
| AfaI | GTAC | 4 cut(s) | 1039, 2027, 2239, 2398 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 1388, 1576, 1986, 2270, 2406, 2410, 2498, 2671, 3108 |
| AflII | CTTAAG | 1 cut(s) | 2111 |
| AflIII | ACRYGT | 1 cut(s) | 315 |
| AjiI | CACGTC | 1 cut(s) | 2216 |
| AjnI | CCWGG | 1 cut(s) | 1881 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2654, 2686 |
| AleI | CACNNNNGTG | 1 cut(s) | 1847 |
| Alw21I | GWGCWC | 3 cut(s) | 625, 728, 2618 |
| Alw26I | GTCTC | 5 cut(s) | 529, 578, 2341, 2445, 3035 |
| Alw44I | GTGCAC | 1 cut(s) | 724 |
| AlwI | GGATC | 4 cut(s) | 1587, 2204, 2217, 2683 |
| Ama87I | CYCGRG | 2 cut(s) | 2264, 2961 |
| ApaI | GGGCCC | 2 cut(s) | 1382, 2949 |
| ApaLI | GTGCAC | 1 cut(s) | 724 |
| ApeKI | GCWGC | 8 cut(s) | 389, 411, 891, 954, 1152, 1345, 2319, 2420 |
| ApoI | RAATTY | 3 cut(s) | 972, 1670, 2514 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1066, 1098 |
| AseI | ATTAAT | 1 cut(s) | 1032 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1625, 1638 |
| AspLEI | GCGC | 5 cut(s) | 16, 1527, 1597, 1734, 3060 |
| AvaI | CYCGRG | 2 cut(s) | 2264, 2961 |
| AvaII | GGWCC | 4 cut(s) | 37, 2501, 2918, 2938 |
| BaeGI | GKGCMC | 3 cut(s) | 728, 1382, 2949 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2229, 2262, 2380, 2413 |
| BalI | TGGCCA | 3 cut(s) | 1118, 1776, 2016 |
| BamHI | GGATCC | 1 cut(s) | 2209 |
| BanII | GRGCYC | 2 cut(s) | 1382, 2949 |
| BbsI | GAAGAC | 5 cut(s) | 105, 742, 1379, 1665, 2520 |
| Bbv12I | GWGCWC | 3 cut(s) | 625, 728, 2618 |
| BbvI | GCAGC | 8 cut(s) | 376, 398, 903, 941, 1139, 1357, 2306, 2407 |
| BccI | CCATC | 6 cut(s) | 661, 1306, 1846, 2006, 2296, 2744 |
| BceAI | ACGGC | 3 cut(s) | 1777, 1819, 1836 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1259, 1293 |
| BciT130I | CCWGG | 1 cut(s) | 1883 |
| BclI | TGATCA | 1 cut(s) | 2893 |
| BcoDI | GTCTC | 5 cut(s) | 529, 578, 2341, 2445, 3035 |
| BfaI | CTAG | 4 cut(s) | 872, 1388, 1589, 2061 |
| BfmI | CTRYAG | 3 cut(s) | 237, 390, 412 |
| BfrI | CTTAAG | 1 cut(s) | 2111 |
| BfuAI | ACCTGC | 1 cut(s) | 3017 |
| BglII | AGATCT | 1 cut(s) | 87 |
| Bme1390I | CCNGG | 1 cut(s) | 1883 |
| Bme18I | GGWCC | 4 cut(s) | 37, 2501, 2918, 2938 |
| BmeT110I | CYCGRG | 2 cut(s) | 2264, 2961 |
| BmgBI | CACGTC | 1 cut(s) | 2216 |
| BmiI | GGNNCC | 6 cut(s) | 1380, 1824, 1830, 2211, 2920, 2947 |
| BmrFI | CCNGG | 1 cut(s) | 1883 |
| BmrI | ACTGGG | 2 cut(s) | 820, 3173 |
| BmsI | GCATC | 8 cut(s) | 667, 689, 1083, 1270, 1280, 1582, 1681, 2287 |
| BmuI | ACTGGG | 2 cut(s) | 820, 3173 |
| BpiI | GAAGAC | 5 cut(s) | 105, 742, 1379, 1665, 2520 |
| BpmI | CTGGAG | 3 cut(s) | 61, 816, 1568 |
| BpuEI | CTTGAG | 4 cut(s) | 419, 553, 2632, 3017 |
| BsaAI | YACGTR | 1 cut(s) | 250 |
| BsaHI | GRCGYC | 2 cut(s) | 1272, 1977 |
| BsaI | GGTCTC | 2 cut(s) | 578, 3035 |
| BsaJI | CCNNGG | 9 cut(s) | 117, 198, 641, 1402, 1645, 1842, 2582, 2934, 2941 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 504, 534, 1435, 1465, 1472, 1502 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 1388, 1576, 1986, 2270, 2406, 2410, 2498, 2671, 3108 |
| Bse118I | RCCGGY | 1 cut(s) | 1597 |
| Bse1I | ACTGG | 3 cut(s) | 815, 1996, 3168 |
| Bse3DI | GCAATG | 7 cut(s) | 282, 291, 1753, 1771, 1777, 2154, 2649 |
| BseBI | CCWGG | 1 cut(s) | 1883 |
| BseDI | CCNNGG | 9 cut(s) | 117, 198, 641, 1402, 1645, 1842, 2582, 2934, 2941 |
| BseGI | GGATG | 6 cut(s) | 237, 2017, 2302, 2379, 2592, 2755 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 1388, 1576, 1986, 2270, 2406, 2410, 2498, 2671, 3108 |
| BseMI | GCAATG | 7 cut(s) | 282, 291, 1753, 1771, 1777, 2154, 2649 |
| BseMII | CTCAG | 6 cut(s) | 1585, 1597, 1992, 2570, 3063, 3152 |
| BseNI | ACTGG | 3 cut(s) | 815, 1996, 3168 |
| BseRI | GAGGAG | 5 cut(s) | 163, 528, 1443, 1446, 1480 |
| BseSI | GKGCMC | 3 cut(s) | 728, 1382, 2949 |
| BseXI | GCAGC | 8 cut(s) | 376, 398, 903, 941, 1139, 1357, 2306, 2407 |
| BseYI | CCCAGC | 1 cut(s) | 298 |
| BsgI | GTGCAG | 1 cut(s) | 637 |
| Bsh1236I | CGCG | 2 cut(s) | 16, 1527 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1284, 1651 |
| BsiEI | CGRYCG | 2 cut(s) | 1284, 1651 |
| BsiHKAI | GWGCWC | 3 cut(s) | 625, 728, 2618 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2264, 2961 |
| BsiSI | CCGG | 4 cut(s) | 1598, 1729, 1826, 1832 |
| BslFI | GGGAC | 3 cut(s) | 1236, 1831, 2904 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 1388, 1576, 1986, 2270, 2406, 2410, 2498, 2671, 3108 |
| BsmAI | GTCTC | 5 cut(s) | 529, 578, 2341, 2445, 3035 |
| BsmFI | GGGAC | 3 cut(s) | 1236, 1831, 2904 |
| BsmI | GAATGC | 3 cut(s) | 332, 423, 2248 |
| Bso31I | GGTCTC | 2 cut(s) | 578, 3035 |
| BsoBI | CYCGRG | 2 cut(s) | 2264, 2961 |
| Bsp120I | GGGCCC | 2 cut(s) | 1378, 2945 |
| Bsp1286I | GDGCHC | 5 cut(s) | 625, 728, 1382, 2618, 2949 |
| Bsp143I | GATC | 9 cut(s) | 7, 87, 165, 1579, 2209, 2326, 2675, 2893, 3121 |
| Bsp19I | CCATGG | 2 cut(s) | 641, 2934 |
| BspCNI | CTCAG | 6 cut(s) | 1584, 1596, 1993, 2569, 3062, 3151 |
| BspFNI | CGCG | 2 cut(s) | 16, 1527 |
| BspHI | TCATGA | 2 cut(s) | 1666, 2458 |
| BspLI | GGNNCC | 6 cut(s) | 1380, 1824, 1830, 2211, 2920, 2947 |
| BspMAI | CTGCAG | 2 cut(s) | 394, 416 |
| BspMI | ACCTGC | 1 cut(s) | 3017 |
| BspPI | GGATC | 4 cut(s) | 1587, 2204, 2217, 2683 |
| BspQI | GCTCTTC | 1 cut(s) | 2493 |
| BspTI | CTTAAG | 1 cut(s) | 2111 |
| BspTNI | GGTCTC | 2 cut(s) | 578, 3035 |
| BsrBI | CCGCTC | 1 cut(s) | 1566 |
| BsrDI | GCAATG | 7 cut(s) | 282, 291, 1753, 1771, 1777, 2154, 2649 |
| BsrFI | RCCGGY | 1 cut(s) | 1597 |
| BsrI | ACTGG | 3 cut(s) | 815, 1996, 3168 |
| BssAI | RCCGGY | 1 cut(s) | 1597 |
| BssECI | CCNNGG | 9 cut(s) | 117, 198, 641, 1402, 1645, 1842, 2582, 2934, 2941 |
| BssMI | GATC | 9 cut(s) | 7, 87, 165, 1579, 2209, 2326, 2675, 2893, 3121 |
| BssNI | GRCGYC | 2 cut(s) | 1272, 1977 |
| BssT1I | CCWWGG | 5 cut(s) | 117, 198, 641, 2934, 2941 |
| Bst2UI | CCWGG | 1 cut(s) | 1883 |
| Bst4CI | ACNGT | 6 cut(s) | 984, 1138, 1649, 1846, 2526, 2782 |
| Bst6I | CTCTTC | 4 cut(s) | 1510, 2160, 2493, 3101 |
| BstACI | GRCGYC | 2 cut(s) | 1272, 1977 |
| BstAFI | CTTAAG | 1 cut(s) | 2111 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 281, 1413 |
| BstBAI | YACGTR | 1 cut(s) | 250 |
| BstC8I | GCNNGC | 7 cut(s) | 1319, 1382, 1523, 1544, 1599, 1696, 2484 |
| BstDEI | CTNAG | 6 cut(s) | 1571, 1583, 2001, 2556, 3049, 3138 |
| BstDSI | CCRYGG | 5 cut(s) | 641, 1645, 1842, 2582, 2934 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1984 |
| BstF5I | GGATG | 6 cut(s) | 237, 2017, 2302, 2379, 2592, 2755 |
| BstFNI | CGCG | 2 cut(s) | 16, 1527 |
| BstHHI | GCGC | 5 cut(s) | 16, 1527, 1597, 1734, 3060 |
| BstKTI | GATC | 9 cut(s) | 10, 90, 168, 1582, 2212, 2329, 2678, 2896, 3124 |
| BstMAI | GTCTC | 5 cut(s) | 529, 578, 2341, 2445, 3035 |
| BstMBI | GATC | 9 cut(s) | 7, 87, 165, 1579, 2209, 2326, 2675, 2893, 3121 |
| BstMCI | CGRYCG | 2 cut(s) | 1284, 1651 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 11, 281, 1413, 1552, 2193 |
| BstNI | CCWGG | 1 cut(s) | 1883 |
| BstNSI | RCATGY | 3 cut(s) | 319, 1229, 1546 |
| BstSCI | CCNGG | 1 cut(s) | 1881 |
| BstSFI | CTRYAG | 3 cut(s) | 237, 390, 412 |
| BstSLI | GKGCMC | 3 cut(s) | 728, 1382, 2949 |
| BstUI | CGCG | 2 cut(s) | 16, 1527 |
| BstV1I | GCAGC | 8 cut(s) | 376, 398, 903, 941, 1139, 1357, 2306, 2407 |
| BstV2I | GAAGAC | 5 cut(s) | 105, 742, 1379, 1665, 2520 |
| BstX2I | RGATCY | 3 cut(s) | 87, 1579, 2209 |
| BstYI | RGATCY | 3 cut(s) | 87, 1579, 2209 |
| BtgI | CCRYGG | 5 cut(s) | 641, 1645, 1842, 2582, 2934 |
| BtgZI | GCGATG | 3 cut(s) | 52, 1303, 2315 |
| BtrI | CACGTC | 1 cut(s) | 2216 |
| BtsCI | GGATG | 6 cut(s) | 237, 2017, 2302, 2379, 2592, 2755 |
| BtsI | GCAGTG | 2 cut(s) | 625, 2920 |
| BtsIMutI | CAGTG | 7 cut(s) | 441, 625, 1442, 1579, 2847, 2880, 2920 |
| BveI | ACCTGC | 1 cut(s) | 3017 |
| Cac8I | GCNNGC | 7 cut(s) | 1319, 1382, 1523, 1544, 1599, 1696, 2484 |
| CciI | TCATGA | 2 cut(s) | 1666, 2458 |
| CfoI | GCGC | 5 cut(s) | 16, 1527, 1597, 1734, 3060 |
| Cfr10I | RCCGGY | 1 cut(s) | 1597 |
| CseI | GACGC | 4 cut(s) | 5, 1417, 1670, 1985 |
| Csp6I | GTAC | 4 cut(s) | 1038, 2026, 2238, 2397 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1120, 1155, 1688, 1723 |
| CviQI | GTAC | 4 cut(s) | 1038, 2026, 2238, 2397 |
| DdeI | CTNAG | 6 cut(s) | 1571, 1583, 2001, 2556, 3049, 3138 |
| DpnI | GATC | 9 cut(s) | 9, 89, 167, 1581, 2211, 2328, 2677, 2895, 3123 |
| DpnII | GATC | 9 cut(s) | 7, 87, 165, 1579, 2209, 2326, 2675, 2893, 3121 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1181 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1181 |
| EaeI | YGGCCR | 4 cut(s) | 1116, 1298, 1774, 2014 |
| Eam1104I | CTCTTC | 4 cut(s) | 1510, 2160, 2493, 3101 |
| EarI | CTCTTC | 4 cut(s) | 1510, 2160, 2493, 3101 |
| Eco130I | CCWWGG | 5 cut(s) | 117, 198, 641, 2934, 2941 |
| Eco24I | GRGCYC | 2 cut(s) | 1382, 2949 |
| Eco31I | GGTCTC | 2 cut(s) | 578, 3035 |
| Eco32I | GATATC | 1 cut(s) | 1159 |
| Eco47I | GGWCC | 4 cut(s) | 37, 2501, 2918, 2938 |
| Eco57I | CTGAAG | 4 cut(s) | 1418, 1739, 2856, 2880 |
| Eco88I | CYCGRG | 2 cut(s) | 2264, 2961 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1984 |
| EcoO109I | RGGNCCY | 1 cut(s) | 37 |
| EcoRI | GAATTC | 1 cut(s) | 1670 |
| EcoRII | CCWGG | 1 cut(s) | 1881 |
| EcoRV | GATATC | 1 cut(s) | 1159 |
| EcoT14I | CCWWGG | 5 cut(s) | 117, 198, 641, 2934, 2941 |
| EcoT22I | ATGCAT | 4 cut(s) | 682, 1191, 2287, 2975 |
| EcoT38I | GRGCYC | 2 cut(s) | 1382, 2949 |
| ErhI | CCWWGG | 5 cut(s) | 117, 198, 641, 2934, 2941 |
| FaqI | GGGAC | 3 cut(s) | 1236, 1831, 2904 |
| FauI | CCCGC | 2 cut(s) | 1286, 1389 |
| FauNDI | CATATG | 1 cut(s) | 1107 |
| FbaI | TGATCA | 1 cut(s) | 2893 |
| FblI | GTMKAC | 1 cut(s) | 1354 |
| FokI | GGATG | 6 cut(s) | 244, 2024, 2309, 2366, 2599, 2762 |
| FriOI | GRGCYC | 2 cut(s) | 1382, 2949 |
| FspBI | CTAG | 4 cut(s) | 872, 1388, 1589, 2061 |
| GlaI | GCGC | 5 cut(s) | 15, 1526, 1596, 1733, 3059 |
| GsaI | CCCAGC | 1 cut(s) | 302 |
| GsuI | CTGGAG | 3 cut(s) | 61, 816, 1568 |
| HapII | CCGG | 4 cut(s) | 1598, 1729, 1826, 1832 |
| HgaI | GACGC | 4 cut(s) | 5, 1417, 1670, 1985 |
| HhaI | GCGC | 5 cut(s) | 16, 1527, 1597, 1734, 3060 |
| Hin1I | GRCGYC | 2 cut(s) | 1272, 1977 |
| Hin6I | GCGC | 5 cut(s) | 14, 1525, 1595, 1732, 3058 |
| HinP1I | GCGC | 5 cut(s) | 14, 1525, 1595, 1732, 3058 |
| HincII | GTYRAC | 1 cut(s) | 936 |
| HindII | GTYRAC | 1 cut(s) | 936 |
| HindIII | AAGCTT | 2 cut(s) | 2228, 2463 |
| HpaII | CCGG | 4 cut(s) | 1598, 1729, 1826, 1832 |
| Hpy166II | GTNNAC | 7 cut(s) | 726, 936, 1128, 1144, 1355, 1842, 2377 |
| Hpy8I | GTNNAC | 7 cut(s) | 726, 936, 1128, 1144, 1355, 1842, 2377 |
| Hpy99I | CGWCG | 3 cut(s) | 1274, 1277, 1309 |
| HpyCH4III | ACNGT | 6 cut(s) | 984, 1138, 1649, 1846, 2526, 2782 |
| HpyCH4IV | ACGT | 6 cut(s) | 249, 1272, 1307, 1683, 2215, 3180 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 11, 281, 1413, 1552, 2193 |
| HpyF3I | CTNAG | 6 cut(s) | 1571, 1583, 2001, 2556, 3049, 3138 |
| HpySE526I | ACGT | 6 cut(s) | 249, 1272, 1307, 1683, 2215, 3180 |
| Hsp92I | GRCGYC | 2 cut(s) | 1272, 1977 |
| HspAI | GCGC | 5 cut(s) | 14, 1525, 1595, 1732, 3058 |
| KroI | GCCGGC | 1 cut(s) | 1597 |
| KroNI | GCCGGC | 1 cut(s) | 1599 |
| Ksp22I | TGATCA | 1 cut(s) | 2893 |
| Kzo9I | GATC | 9 cut(s) | 7, 87, 165, 1579, 2209, 2326, 2675, 2893, 3121 |
| LguI | GCTCTTC | 1 cut(s) | 2493 |
| LmnI | GCTCC | 8 cut(s) | 928, 962, 1571, 1611, 1731, 1828, 1834, 1868 |
| Lsp1109I | GCAGC | 8 cut(s) | 376, 398, 903, 941, 1139, 1357, 2306, 2407 |
| LweI | GCATC | 8 cut(s) | 667, 689, 1083, 1270, 1280, 1582, 1681, 2287 |
| MaeI | CTAG | 4 cut(s) | 872, 1388, 1589, 2061 |
| MaeII | ACGT | 6 cut(s) | 249, 1272, 1307, 1683, 2215, 3180 |
| MaeIII | GTNAC | 7 cut(s) | 250, 921, 1499, 1679, 2042, 2863, 2927 |
| MalI | GATC | 9 cut(s) | 9, 89, 167, 1581, 2211, 2328, 2677, 2895, 3123 |
| MbiI | CCGCTC | 1 cut(s) | 1566 |
| MboI | GATC | 9 cut(s) | 7, 87, 165, 1579, 2209, 2326, 2675, 2893, 3121 |
| MfeI | CAATTG | 2 cut(s) | 267, 1328 |
| MflI | RGATCY | 3 cut(s) | 87, 1579, 2209 |
| MhlI | GDGCHC | 5 cut(s) | 625, 728, 1382, 2618, 2949 |
| MlsI | TGGCCA | 3 cut(s) | 1118, 1776, 2016 |
| MluNI | TGGCCA | 3 cut(s) | 1118, 1776, 2016 |
| MmeI | TCCRAC | 6 cut(s) | 502, 856, 1533, 1782, 2131, 3109 |
| Mox20I | TGGCCA | 3 cut(s) | 1118, 1776, 2016 |
| Mph1103I | ATGCAT | 4 cut(s) | 682, 1191, 2287, 2975 |
| MreI | CGCCGGCG | 1 cut(s) | 1597 |
| MroNI | GCCGGC | 1 cut(s) | 1597 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1625, 1638 |
| MscI | TGGCCA | 3 cut(s) | 1118, 1776, 2016 |
| MslI | CAYNNNNRTG | 5 cut(s) | 771, 1110, 1847, 2280, 3215 |
| Msp20I | TGGCCA | 3 cut(s) | 1118, 1776, 2016 |
| MspA1I | CMGCKG | 2 cut(s) | 81, 486 |
| MspCI | CTTAAG | 1 cut(s) | 2111 |
| MspI | CCGG | 4 cut(s) | 1598, 1729, 1826, 1832 |
| MspR9I | CCNGG | 1 cut(s) | 1883 |
| MunI | CAATTG | 2 cut(s) | 267, 1328 |
| Mva1269I | GAATGC | 3 cut(s) | 332, 423, 2248 |
| MvaI | CCWGG | 1 cut(s) | 1883 |
| MvnI | CGCG | 2 cut(s) | 16, 1527 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 11, 281, 1413, 1552, 2193 |
| NaeI | GCCGGC | 1 cut(s) | 1599 |
| NcoI | CCATGG | 2 cut(s) | 641, 2934 |
| NdeI | CATATG | 1 cut(s) | 1107 |
| NdeII | GATC | 9 cut(s) | 7, 87, 165, 1579, 2209, 2326, 2675, 2893, 3121 |
| NgoMIV | GCCGGC | 1 cut(s) | 1597 |
| NlaIV | GGNNCC | 6 cut(s) | 1380, 1824, 1830, 2211, 2920, 2947 |
| NmeAIII | GCCGAG | 2 cut(s) | 1374, 1383 |
| NmuCI | GTSAC | 4 cut(s) | 250, 921, 1499, 2927 |
| NsiI | ATGCAT | 4 cut(s) | 682, 1191, 2287, 2975 |
| NspI | RCATGY | 3 cut(s) | 319, 1229, 1546 |
| OliI | CACNNNNGTG | 1 cut(s) | 1847 |
| PaeI | GCATGC | 1 cut(s) | 1546 |
| PagI | TCATGA | 2 cut(s) | 1666, 2458 |
| PciI | ACATGT | 1 cut(s) | 315 |
| PciSI | GCTCTTC | 1 cut(s) | 2493 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1281, 1648 |
| PctI | GAATGC | 3 cut(s) | 332, 423, 2248 |
| PdiI | GCCGGC | 1 cut(s) | 1599 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1625, 1638 |
| PfeI | GAWTC | 2 cut(s) | 1360, 1606 |
| PflFI | GACNNNGTC | 1 cut(s) | 35 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2671 |
| Ppu21I | YACGTR | 1 cut(s) | 250 |
| PpuMI | RGGWCCY | 1 cut(s) | 37 |
| PscI | ACATGT | 1 cut(s) | 315 |
| PshBI | ATTAAT | 1 cut(s) | 1032 |
| Psp5II | RGGWCCY | 1 cut(s) | 37 |
| Psp6I | CCWGG | 1 cut(s) | 1881 |
| PspFI | CCCAGC | 1 cut(s) | 298 |
| PspGI | CCWGG | 1 cut(s) | 1881 |
| PspN4I | GGNNCC | 6 cut(s) | 1380, 1824, 1830, 2211, 2920, 2947 |
| PspOMI | GGGCCC | 2 cut(s) | 1378, 2945 |
| PspPPI | RGGWCCY | 1 cut(s) | 37 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2821, 2853 |
| PstI | CTGCAG | 2 cut(s) | 394, 416 |
| PsuI | RGATCY | 3 cut(s) | 87, 1579, 2209 |
| PsyI | GACNNNGTC | 1 cut(s) | 35 |
| PvuII | CAGCTG | 1 cut(s) | 486 |
| RsaI | GTAC | 4 cut(s) | 1039, 2027, 2239, 2398 |
| RsaNI | GTAC | 4 cut(s) | 1038, 2026, 2238, 2397 |
| RseI | CAYNNNNRTG | 5 cut(s) | 771, 1110, 1847, 2280, 3215 |
| SapI | GCTCTTC | 1 cut(s) | 2493 |
| Sau3AI | GATC | 9 cut(s) | 7, 87, 165, 1579, 2209, 2326, 2675, 2893, 3121 |
| ScrFI | CCNGG | 1 cut(s) | 1883 |
| SduI | GDGCHC | 5 cut(s) | 625, 728, 1382, 2618, 2949 |
| SfaNI | GCATC | 8 cut(s) | 667, 689, 1083, 1270, 1280, 1582, 1681, 2287 |
| SfcI | CTRYAG | 3 cut(s) | 237, 390, 412 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1597 |
| SinI | GGWCC | 4 cut(s) | 37, 2501, 2918, 2938 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 771, 1110, 1847, 2280, 3215 |
| SmlI | CTYRAG | 5 cut(s) | 398, 532, 2111, 2611, 3032 |
| SmoI | CTYRAG | 5 cut(s) | 398, 532, 2111, 2611, 3032 |
| SphI | GCATGC | 1 cut(s) | 1546 |
| SspI | AATATT | 1 cut(s) | 1624 |
| SspMI | CTAG | 4 cut(s) | 872, 1388, 1589, 2061 |
| StyD4I | CCNGG | 1 cut(s) | 1881 |
| StyI | CCWWGG | 5 cut(s) | 117, 198, 641, 2934, 2941 |
| TaaI | ACNGT | 6 cut(s) | 984, 1138, 1649, 1846, 2526, 2782 |
| TaiI | ACGT | 6 cut(s) | 252, 1275, 1310, 1686, 2218, 3183 |
| TaqI | TCGA | 4 cut(s) | 950, 1161, 1264, 2183 |
| TatI | WGTACW | 2 cut(s) | 1037, 2025 |
| TauI | GCSGC | 2 cut(s) | 1303, 2060 |
| TfiI | GAWTC | 2 cut(s) | 1360, 1606 |
| TscAI | CASTG | 7 cut(s) | 441, 625, 1442, 1579, 2847, 2880, 2920 |
| TseFI | GTSAC | 4 cut(s) | 250, 921, 1499, 2927 |
| TseI | GCWGC | 8 cut(s) | 389, 411, 891, 954, 1152, 1345, 2319, 2420 |
| Tsp45I | GTSAC | 4 cut(s) | 250, 921, 1499, 2927 |
| TspDTI | ATGAA | 9 cut(s) | 625, 1124, 1683, 2179, 2475, 2603, 2958, 3162, 3165 |
| TspGWI | ACGGA | 3 cut(s) | 166, 1524, 2599 |
| TspRI | CASTG | 7 cut(s) | 441, 625, 1442, 1579, 2847, 2880, 2920 |
| Tth111I | GACNNNGTC | 1 cut(s) | 35 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2671 |
| Vha464I | CTTAAG | 1 cut(s) | 2111 |
| VneI | GTGCAC | 1 cut(s) | 724 |
| VpaK11BI | GGWCC | 4 cut(s) | 37, 2501, 2918, 2938 |
| VspI | ATTAAT | 1 cut(s) | 1032 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1984 |
| XapI | RAATTY | 3 cut(s) | 972, 1670, 2514 |
| XbaI | TCTAGA | 1 cut(s) | 1588 |
| XceI | RCATGY | 3 cut(s) | 319, 1229, 1546 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1849 |
| XmiI | GTMKAC | 1 cut(s) | 1354 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1625, 1638 |
| XspI | CTAG | 4 cut(s) | 872, 1388, 1589, 2061 |
| ZraI | GACGTC | 1 cut(s) | 1273 |
| Zsp2I | ATGCAT | 4 cut(s) | 682, 1191, 2287, 2975 |