Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8467017.1

Orthogroup ID

OG0005652

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1751

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8467017.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 820 bp

atgctgaacccttcaccacaaagctatcaagaagcaccatttccttgtagaattttccaaaacctagcaaacagatatgcatttaccaagaaaacttttccggatccacgtccagaatataagctttgtggtactattgtgcattctggtttttcacctgagtctggtcattattatgcatatattaaggatgcgatgggtcgttggtattgctgcaacgatcagtttgtctctctttcatctttgcaagaggtcttatctgaaaaggtttacatccttttcttctcccgtaccaaccaaaggtcggttaatgctgcttcaaatggggtaaagtctcaaaattgtaatggtcatgaagcttccaaaaaaccaaagcctgctcttccaccaaaaggaccgcaacaaaaaaattctgaacagtcttcttggaaggatatttctactaaatctcaggttgataaagtgccttcaggcccacggatgaagtttaacatcaatggaaacttgagcaccaaaagaactcctgcaactgataatggaaacattgcttacaagaaccaatctgtgggatcaaatggggaggtgaaggactcagttagtttggacaaaagtgagaaagccaagatgactttgataaatggggatggtttgaacgggaatataacatctgatactgttgaagctaacaacacccaaccgttttcttcaccaatagaaaatggtagtgtgggttcagtgaaatccgaaccctctgaagttactgcttcagtgaaaaccgaactccctgatcactctgaattggatagcagtggtcccaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

273

Amino Acids

29.84

Weight (kDa)

8.67

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14400
fragaria_vesca	FvH4_3g16490 FvH4_3g16490 FvH4_3g16490 FvH4_3g16490
malus_domestica	MD05G1209600.v1.1 MD10G1195900.v1.1
prunus_persica	Prupe.4G147900_v2.0.a1
pyrus_communis	pycom05g19560 pycom10g16950
rosa_chinensis	RchiOBHm_Chr5g0027541
rosa_laevigata	RLG00000033025
rosa_multiflora	Rmu_co8326735.1_g000001 Rmu_co8467017.1_g000001 Rmu_sc0004493.1_g000008 Rmu_sc0007802.1_g000039 Rmu_sc0011056.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052000 Rroxscaffold_1G00052020
rosa_rugosa	Rorug05G0099400 Rorug05G0099500 Rorug05G0099600
rosa_samantha	Rh5AG193700 Rh5BG191700 Rh5CG211900 Rh5DG193400 Rh5DG193600
rosa_wichuraiana	Rw5G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	3 cut(s)	98, 111, 577
AcsI	RAATTY	2 cut(s)	51, 409
AcuI	CTGAAG	3 cut(s)	453, 750, 774
AfaI	GTAC	2 cut(s)	133, 292
AfiI	CCNNNNNNNGG	5 cut(s)	164, 300, 304, 392, 565
AgsI	TTSAA	3 cut(s)	321, 652, 680
AjiI	CACGTC	1 cut(s)	110
AluBI	AGCT	4 cut(s)	24, 124, 359, 683
AluI	AGCT	4 cut(s)	24, 124, 359, 683
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	2 cut(s)	235, 339
AlwI	GGATC	3 cut(s)	98, 111, 577
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	1 cut(s)	472
ApeKI	GCWGC	2 cut(s)	213, 314
ApoI	RAATTY	2 cut(s)	51, 409
AspS9I	GGNCC	3 cut(s)	395, 473, 812
AsuHPI	GGTGA	4 cut(s)	6, 147, 595, 699
AvaII	GGWCC	2 cut(s)	395, 812
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BamHI	GGATCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	200, 301
BccI	CCATC	2 cut(s)	190, 638
BclI	TGATCA	1 cut(s)	787
BcoDI	GTCTC	2 cut(s)	235, 339
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	2 cut(s)	214, 315
BlsI	GCNGC	2 cut(s)	215, 316
Bme18I	GGWCC	2 cut(s)	395, 812
BmgBI	CACGTC	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	395, 473, 812
BmiI	GGNNCC	2 cut(s)	105, 814
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	526
BsaJI	CCNNGG	1 cut(s)	476
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	5 cut(s)	164, 300, 304, 392, 565
Bse3DI	GCAATG	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	4 cut(s)	196, 273, 486, 649
BseLI	CCNNNNNNNGG	5 cut(s)	164, 300, 304, 392, 565
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	3 cut(s)	150, 464, 606
BseXI	GCAGC	2 cut(s)	200, 301
BshFI	GGCC	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	512
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	798
BslI	CCNNNNNNNGG	5 cut(s)	164, 300, 304, 392, 565
BsmAI	GTCTC	2 cut(s)	235, 339
BsmFI	GGGAC	1 cut(s)	798
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	4 cut(s)	103, 220, 569, 787
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	474
BspCNI	CTCAG	3 cut(s)	151, 463, 605
BspEI	TCCGGA	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	105, 814
BspPI	GGATC	3 cut(s)	98, 111, 577
BspQI	GCTCTTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	543
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	4 cut(s)	103, 220, 569, 787
Bst4CI	ACNGT	3 cut(s)	420, 676, 699
Bst6I	CTCTTC	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	3 cut(s)	159, 450, 592
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	4 cut(s)	196, 273, 486, 649
BstKTI	GATC	4 cut(s)	106, 223, 572, 790
BstMAI	GTCTC	2 cut(s)	235, 339
BstMBI	GATC	4 cut(s)	103, 220, 569, 787
BstV1I	GCAGC	2 cut(s)	200, 301
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	476
BtgZI	GCGATG	1 cut(s)	209
BtrI	CACGTC	1 cut(s)	110
BtsCI	GGATG	4 cut(s)	196, 273, 486, 649
BtsI	GCAGTG	1 cut(s)	814
BtsIMutI	CAGTG	3 cut(s)	741, 774, 814
Cac8I	GCNNGC	1 cut(s)	378
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	395, 473, 812
Csp6I	GTAC	2 cut(s)	132, 291
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	7 cut(s)	24, 124, 359, 376, 474, 620, 683
CviKI_1	RGCY	7 cut(s)	24, 124, 359, 376, 474, 620, 683
CviQI	GTAC	2 cut(s)	132, 291
DdeI	CTNAG	3 cut(s)	159, 450, 592
DpnI	GATC	4 cut(s)	105, 222, 571, 789
DpnII	GATC	4 cut(s)	103, 220, 569, 787
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco47I	GGWCC	2 cut(s)	395, 812
Eco57I	CTGAAG	3 cut(s)	453, 750, 774
EcoT22I	ATGCAT	2 cut(s)	82, 181
FaeI	CATG	1 cut(s)	356
FaiI	YATR	7 cut(s)	78, 120, 177, 181, 183, 354, 662
FaqI	GGGAC	1 cut(s)	798
FatI	CATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	787
Fnu4HI	GCNGC	2 cut(s)	214, 315
FokI	GGATG	4 cut(s)	203, 260, 493, 656
Fsp4HI	GCNGC	2 cut(s)	214, 315
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	2 cut(s)	214, 315
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	1 cut(s)	356
HindIII	AAGCTT	2 cut(s)	122, 357
HinfI	GANTC	2 cut(s)	161, 590
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	4 cut(s)	6, 147, 595, 699
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	6 cut(s)	262, 415, 670, 745, 754, 796
Hpy188III	TCNNGA	4 cut(s)	29, 101, 113, 353
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	4 cut(s)	21, 424, 477, 580
HpyCH4III	ACNGT	3 cut(s)	420, 676, 699
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	6 cut(s)	80, 142, 179, 216, 247, 527
HpyF3I	CTNAG	3 cut(s)	159, 450, 592
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	787
Kzo9I	GATC	4 cut(s)	103, 220, 569, 787
LguI	GCTCTTC	1 cut(s)	387
Lsp1109I	GCAGC	2 cut(s)	200, 301
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	4 cut(s)	105, 222, 571, 789
MboI	GATC	4 cut(s)	103, 220, 569, 787
MboII	GAAGA	4 cut(s)	274, 374, 414, 696
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	4 cut(s)	51, 340, 409, 797
MlyI	GAGTC	2 cut(s)	170, 584
MnlI	CCTC	3 cut(s)	244, 574, 760
Mph1103I	ATGCAT	2 cut(s)	82, 181
MroI	TCCGGA	1 cut(s)	100
MseI	TTAA	3 cut(s)	186, 309, 489
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	142
NdeII	GATC	4 cut(s)	103, 220, 569, 787
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	2 cut(s)	105, 814
NsiI	ATGCAT	2 cut(s)	82, 181
PagI	TCATGA	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	387
PctI	GAATGC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	215, 316
PleI	GAGTC	2 cut(s)	169, 584
PpsI	GAGTC	2 cut(s)	169, 584
PspN4I	GGNNCC	2 cut(s)	105, 814
PspPI	GGNCC	3 cut(s)	395, 473, 812
PsrI	GAACNNNNNNTAC	2 cut(s)	715, 747
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	2 cut(s)	133, 292
RsaNI	GTAC	2 cut(s)	132, 291
RseI	CAYNNNNRTG	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	3 cut(s)	186, 309, 489
SatI	GCNGC	2 cut(s)	214, 315
Sau3AI	GATC	4 cut(s)	103, 220, 569, 787
Sau96I	GGNCC	3 cut(s)	395, 473, 812
SchI	GAGTC	2 cut(s)	170, 584
SduI	GDGCHC	1 cut(s)	512
SfaNI	GCATC	1 cut(s)	181
SinI	GGWCC	2 cut(s)	395, 812
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	4 cut(s)	51, 340, 409, 797
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	1 cut(s)	65
TaaI	ACNGT	3 cut(s)	420, 676, 699
TaiI	ACGT	1 cut(s)	112
TasI	AATT	4 cut(s)	51, 340, 409, 797
Tru1I	TTAA	3 cut(s)	186, 309, 489
Tru9I	TTAA	3 cut(s)	186, 309, 489
TscAI	CASTG	3 cut(s)	741, 774, 814
TseI	GCWGC	2 cut(s)	213, 314
TspDTI	ATGAA	3 cut(s)	228, 369, 497
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	3 cut(s)	741, 774, 814
Van91I	CCANNNNNTGG	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	395, 812
XapI	RAATTY	2 cut(s)	51, 409
XspI	CTAG	1 cut(s)	65
Zsp2I	ATGCAT	2 cut(s)	82, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.