Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005652

Physical Location & Seq

Genomic Coordinates Forward (+)

72760615 .. 72766975

Gene Structure 6361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00052000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2001 bp

ATGAGTTGGCAGCCGAGTCTACTGAATCAGAAGCGGAAGACAGGCCCGCCTCTAGGGTTGAAGAACCTCGGCAACTCTTGCTACCTCAACAGCGTCCTTCAGTGCCTCACCTACACCCCTCCTCTCGCCAATTTCTGCCTCCGAAACCAGCACTCCTCCCTCTGTGACTCTTCCGACAAAGAACGGAAGCGCGAGTGTCCGTTTTGCATGCTGGAGAGGCGAATAGTCCGCTCCTTGAGTGTGGATCTCAGTCTAGATGCGCCGGCGAAGATTCGGAGCTGTCTGAATATTTTCGCCGAACACTTTCGCCACGGTCGTCAGGAAGACGCTCATGAATTCCTGCGTTACGTTATTGATGCTTGCCACAACACGTGCCTTCGCCTGAAGAAGCTCCGGCGCAACATCACCAGCAATGGCCTTGCCAACGGCAATGGTCAGGCCAACGGCAAAGCCAATGGGACGGCTCCGGGGTCGTCCACGGTGGTGATGGAGATTTTCGGGGGAGCTTTGCAGAGTCAGGTGAAGTGTCTATCCTGTGGCACAGAGTCCAATAAAGTTGATGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAATTCGCTTAAAGACGCCTTGCAAAGGTTCTTCCAGTCTGAGCTTTTGGATGGCCAGAACAAGTACAAGTGTGAAAGATGTAACAAATTGGTGGCGGCTAGGAAGCAAATGTCGATACTTCAAGCACCTAATGTTCTTGTAATCCAACTTAAGAGATTTGAGGGTCTATTGGGTGGGAAGATTGATAAATCCATTGCATTTGAAGAGTTTTTGGTGCTGTCGAGCTTCATGTGCAAAACAAGTCAGGATCCACATCCAGAATATAAGCTTTGTGGTACTATTGTGCATTCTGGTTTTTCACCCGAGTCTGGTCATTATTATGCATATATTAAGGATGCGATGGGTCGTTGGTATTGCTGCAACGATCAGTTTGTCTCTCTTTCATCTTTGCAAGAGGTCTTATCTGAAAAGGTTTACATCCTTTTCTTCTCCCGTACCAACCAAAGGTCGGTTAATGCTGCTTCAAATGGGTTAAAGTCTCAAAATTGTAATGGTCATGAAGCTTCCAAAAAACCAAAGCCTGCTCTTCCACCAAAAGGACCGCAAAAAAAAAATTCTGAACAGTCTTCTTGGAAGGATATTTCTACTAAATCTCAGGTTGATAAAGTGCCTTCAGGCCCACGGATGAAGTTTAACATCAATGGAAACTTGAGCACCAAAAGAACTCCTGCAACTGATAATGGAAACATTGCTTACAAGAACCAATCTGTGGGATCAAATGGGGAGGTGAAGGACTCGGTTAGTTTGGACAAAAGTGAGAAAGCCAAGATGACTTTGATAAATGGGGATGGTTTGAACGGGAATATAACATCTGATACTGTTGAAACTAACAACACCCAACCATTTTCTTCACCAATAGAAAATGGTAGTGTGGGTTCAGTGAAATCCGAACTCTCTGAAGTTACTGCTTCAGTGAAAACCGAACTCCCTGATCACTCTGAATTGGATAGCAGTGGTCGCAATGGTCACTCCATGGTCCTTGGGCCCAAAAGGAAATCTCGGGGTTCATGCATTTTGTTTGAACATGATGCTCAATCTCTGGAAAAAGTTGAAGAATTGAAGGCATGTCTCAAGAAAGAAGCTCTCTCAGTTTTGCGCTCATGCGGTTGGGCAGATGAGGTTTTCAGTTTTATGCGTTCCCGGAAGAGGTTATGTGTAGATCAAGTTGGACTCACTCAGAATGGTGATGAAGCAAAGAAACTGTTGATCAGGGATTCCAAATCAACTTTTATTTCAAAGATACCCGAGTCTTTGAAGGGGGCTTCATCAAACGTATTAAATCATTTAGCCAAGAATAATGACATTATTGTGTGTGGTGACACTTCACCTGGTGGGACTTGGTGTATATTTTGTATAGAATCTCTTGTATCTCCTGTGGAAGCAGAGTATTATGCTATACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

666

Amino Acids

73.44

Weight (kDa)

8.86

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	19 - 342	4e-55	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	19 - 323	2.8e-18	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14400
fragaria_vesca	FvH4_3g16490 FvH4_3g16490 FvH4_3g16490 FvH4_3g16490
malus_domestica	MD05G1209600.v1.1 MD10G1195900.v1.1
prunus_persica	Prupe.4G147900_v2.0.a1
pyrus_communis	pycom05g19560 pycom10g16950
rosa_chinensis	RchiOBHm_Chr5g0027541
rosa_laevigata	RLG00000033025
rosa_multiflora	Rmu_co8326735.1_g000001 Rmu_co8467017.1_g000001 Rmu_sc0004493.1_g000008 Rmu_sc0007802.1_g000039 Rmu_sc0011056.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052000 Rroxscaffold_1G00052020
rosa_rugosa	Rorug05G0099400 Rorug05G0099500 Rorug05G0099600
rosa_samantha	Rh5AG193700 Rh5BG191700 Rh5CG211900 Rh5DG193400 Rh5DG193600
rosa_wichuraiana	Rw5G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1306
AccBSI	CCGCTC	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	19
AccII	CGCG	1 cut(s)	192
AciI	CCGC	6 cut(s)	34, 47, 229, 692, 1139, 1701
AclWI	GGATC	4 cut(s)	252, 839, 852, 1318
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	2 cut(s)	335, 1150
AcuI	CTGAAG	5 cut(s)	83, 404, 1194, 1491, 1515
AcvI	CACGTG	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	612
AdeI	CACNNNGTG	1 cut(s)	1928
AfaI	GTAC	3 cut(s)	662, 874, 1033
AfiI	CCNNNNNNNGG	8 cut(s)	53, 621, 905, 1041, 1045, 1133, 1306, 1743
AflII	CTTAAG	1 cut(s)	746
AflIII	ACRYGT	1 cut(s)	369
AjnI	CCWGG	1 cut(s)	1924
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	8 cut(s)	279, 391, 506, 640, 822, 865, 1100, 1679
AluI	AGCT	8 cut(s)	279, 391, 506, 640, 822, 865, 1100, 1679
Alw21I	GWGCWC	1 cut(s)	1253
Alw26I	GTCTC	3 cut(s)	976, 1080, 1670
AlwI	GGATC	4 cut(s)	252, 839, 852, 1318
Ama87I	CYCGRG	3 cut(s)	899, 1596, 1841
AoxI	GGCC	6 cut(s)	43, 415, 438, 649, 1213, 1580
ApaI	GGGCCC	1 cut(s)	1584
ApeKI	GCWGC	3 cut(s)	10, 954, 1055
ApoI	RAATTY	2 cut(s)	335, 1150
Asp700I	GAANNNNTTC	2 cut(s)	290, 303
AspLEI	GCGC	4 cut(s)	192, 262, 399, 1695
AspS9I	GGNCC	6 cut(s)	44, 1136, 1214, 1573, 1580, 1581
AsuC2I	CCSGG	2 cut(s)	468, 1738
AvaI	CYCGRG	3 cut(s)	899, 1596, 1841
AvaII	GGWCC	2 cut(s)	1136, 1573
BaeGI	GKGCMC	1 cut(s)	1584
BaeI	ACNNNNGTAYC	4 cut(s)	864, 897, 1829, 1862
BalI	TGGCCA	1 cut(s)	651
BamHI	GGATCC	1 cut(s)	844
BanII	GRGCYC	1 cut(s)	1584
BbrPI	CACGTG	1 cut(s)	372
BbsI	GAAGAC	3 cut(s)	44, 330, 1155
Bbv12I	GWGCWC	1 cut(s)	1253
BbvI	GCAGC	3 cut(s)	22, 941, 1042
BccI	CCATC	4 cut(s)	481, 641, 931, 1379
BceAI	ACGGC	3 cut(s)	442, 460, 477
BciT130I	CCWGG	1 cut(s)	1926
BclI	TGATCA	2 cut(s)	1528, 1803
BcnI	CCSGG	2 cut(s)	468, 1738
BcoDI	GTCTC	3 cut(s)	976, 1080, 1670
BfaI	CTAG	3 cut(s)	53, 254, 696
BfrI	CTTAAG	1 cut(s)	746
BisI	GCNGC	4 cut(s)	11, 693, 955, 1056
BlsI	GCNGC	4 cut(s)	12, 694, 956, 1057
Bme1390I	CCNGG	3 cut(s)	468, 1738, 1926
Bme18I	GGWCC	2 cut(s)	1136, 1573
BmeT110I	CYCGRG	3 cut(s)	899, 1596, 1841
BmgT120I	GGNCC	6 cut(s)	44, 1136, 1214, 1573, 1580, 1581
BmiI	GGNNCC	3 cut(s)	465, 846, 1582
BmrFI	CCNGG	3 cut(s)	468, 1738, 1926
BmsI	GCATC	4 cut(s)	247, 346, 922, 1615
BpiI	GAAGAC	3 cut(s)	44, 330, 1155
BpmI	CTGGAG	1 cut(s)	233
BpuEI	CTTGAG	3 cut(s)	256, 1267, 1652
BpuMI	CCSGG	2 cut(s)	468, 1738
BsaAI	YACGTR	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	849
BsaHI	GRCGYC	1 cut(s)	612
BsaJI	CCNNGG	7 cut(s)	67, 310, 467, 477, 1217, 1569, 1576
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	8 cut(s)	53, 621, 905, 1041, 1045, 1133, 1306, 1743
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	631
Bse3DI	GCAATG	5 cut(s)	418, 436, 789, 1284, 1564
Bse8I	GATNNNNATC	1 cut(s)	849
BseBI	CCWGG	1 cut(s)	1926
BseDI	CCNNGG	7 cut(s)	67, 310, 467, 477, 1217, 1569, 1576
BseGI	GGATG	6 cut(s)	652, 850, 937, 1014, 1227, 1390
BseJI	GATNNNNATC	1 cut(s)	849
BseLI	CCNNNNNNNGG	8 cut(s)	53, 621, 905, 1041, 1045, 1133, 1306, 1743
BseMI	GCAATG	5 cut(s)	418, 436, 789, 1284, 1564
BseMII	CTCAG	5 cut(s)	262, 627, 1205, 1698, 1787
BseNI	ACTGG	1 cut(s)	631
BseRI	GAGGAG	2 cut(s)	111, 145
BseSI	GKGCMC	1 cut(s)	1584
BseXI	GCAGC	3 cut(s)	22, 941, 1042
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	6 cut(s)	45, 417, 440, 651, 1215, 1582
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	1253
BsiHKCI	CYCGRG	3 cut(s)	899, 1596, 1841
BsiSI	CCGG	4 cut(s)	263, 394, 467, 1738
BslFI	GGGAC	2 cut(s)	472, 1945
BslI	CCNNNNNNNGG	8 cut(s)	53, 621, 905, 1041, 1045, 1133, 1306, 1743
BsmAI	GTCTC	3 cut(s)	976, 1080, 1670
BsmFI	GGGAC	2 cut(s)	472, 1945
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	6 cut(s)	45, 417, 440, 651, 1215, 1582
BsoBI	CYCGRG	3 cut(s)	899, 1596, 1841
Bsp120I	GGGCCC	1 cut(s)	1580
Bsp1286I	GDGCHC	2 cut(s)	1253, 1584
Bsp143I	GATC	7 cut(s)	244, 844, 961, 1310, 1528, 1756, 1803
Bsp19I	CCATGG	1 cut(s)	1569
BspACI	CCGC	6 cut(s)	34, 47, 229, 692, 1139, 1701
BspANI	GGCC	6 cut(s)	45, 417, 440, 651, 1215, 1582
BspCNI	CTCAG	5 cut(s)	261, 628, 1204, 1697, 1786
BspFNI	CGCG	1 cut(s)	192
BspHI	TCATGA	2 cut(s)	331, 1093
BspLI	GGNNCC	3 cut(s)	465, 846, 1582
BspPI	GGATC	4 cut(s)	252, 839, 852, 1318
BspQI	GCTCTTC	1 cut(s)	1128
BspTI	CTTAAG	1 cut(s)	746
BsrBI	CCGCTC	1 cut(s)	231
BsrDI	GCAATG	5 cut(s)	418, 436, 789, 1284, 1564
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	631
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	7 cut(s)	67, 310, 467, 477, 1217, 1569, 1576
BssMI	GATC	7 cut(s)	244, 844, 961, 1310, 1528, 1756, 1803
BssNI	GRCGYC	1 cut(s)	612
BssT1I	CCWWGG	2 cut(s)	1569, 1576
Bst2UI	CCWGG	1 cut(s)	1926
Bst4CI	ACNGT	5 cut(s)	314, 481, 1161, 1417, 1800
Bst6I	CTCTTC	4 cut(s)	175, 795, 1128, 1736
BstACI	GRCGYC	1 cut(s)	612
BstAFI	CTTAAG	1 cut(s)	746
BstAPI	GCANNNNNTGC	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	372
BstC8I	GCNNGC	5 cut(s)	47, 209, 264, 361, 1119
BstDEI	CTNAG	5 cut(s)	248, 636, 1191, 1684, 1773
BstDSI	CCRYGG	4 cut(s)	310, 477, 1217, 1569
BstENI	CCTNNNNNAGG	1 cut(s)	619
BstF5I	GGATG	6 cut(s)	652, 850, 937, 1014, 1227, 1390
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	4 cut(s)	192, 262, 399, 1695
BstKTI	GATC	7 cut(s)	247, 847, 964, 1313, 1531, 1759, 1806
BstMAI	GTCTC	3 cut(s)	976, 1080, 1670
BstMBI	GATC	7 cut(s)	244, 844, 961, 1310, 1528, 1756, 1803
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 217, 828, 1554
BstNI	CCWGG	1 cut(s)	1926
BstNSI	RCATGY	2 cut(s)	211, 1665
BstSCI	CCNGG	3 cut(s)	466, 1736, 1924
BstSLI	GKGCMC	1 cut(s)	1584
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	3 cut(s)	22, 941, 1042
BstV2I	GAAGAC	3 cut(s)	44, 330, 1155
BstX2I	RGATCY	2 cut(s)	244, 844
BstYI	RGATCY	2 cut(s)	244, 844
BsuRI	GGCC	6 cut(s)	45, 417, 440, 651, 1215, 1582
BtgI	CCRYGG	4 cut(s)	310, 477, 1217, 1569
BtgZI	GCGATG	1 cut(s)	950
BtsCI	GGATG	6 cut(s)	652, 850, 937, 1014, 1227, 1390
BtsI	GCAGTG	1 cut(s)	1555
BtsIMutI	CAGTG	5 cut(s)	107, 1482, 1515, 1555, 1996
Cac8I	GCNNGC	5 cut(s)	47, 209, 264, 361, 1119
CciI	TCATGA	2 cut(s)	331, 1093
CfoI	GCGC	4 cut(s)	192, 262, 399, 1695
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	6 cut(s)	44, 1136, 1214, 1573, 1580, 1581
CseI	GACGC	3 cut(s)	82, 335, 620
CsiI	ACCWGGT	1 cut(s)	1924
Csp6I	GTAC	3 cut(s)	661, 873, 1032
CviAII	CATG	9 cut(s)	208, 332, 826, 1094, 1570, 1605, 1622, 1662, 1698
CviQI	GTAC	3 cut(s)	661, 873, 1032
DdeI	CTNAG	5 cut(s)	248, 636, 1191, 1684, 1773
DpnI	GATC	7 cut(s)	246, 846, 963, 1312, 1530, 1758, 1805
DpnII	GATC	7 cut(s)	244, 844, 961, 1310, 1528, 1756, 1803
DraIII	CACNNNGTG	1 cut(s)	1928
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	4 cut(s)	175, 795, 1128, 1736
EarI	CTCTTC	4 cut(s)	175, 795, 1128, 1736
Eco130I	CCWWGG	2 cut(s)	1569, 1576
Eco24I	GRGCYC	1 cut(s)	1584
Eco47I	GGWCC	2 cut(s)	1136, 1573
Eco57I	CTGAAG	5 cut(s)	83, 404, 1194, 1491, 1515
Eco72I	CACGTG	1 cut(s)	372
Eco88I	CYCGRG	3 cut(s)	899, 1596, 1841
EcoNI	CCTNNNNNAGG	1 cut(s)	619
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	1924
EcoT14I	CCWWGG	2 cut(s)	1569, 1576
EcoT22I	ATGCAT	2 cut(s)	922, 1610
EcoT38I	GRGCYC	1 cut(s)	1584
ErhI	CCWWGG	2 cut(s)	1569, 1576
FaeI	CATG	9 cut(s)	211, 335, 829, 1097, 1573, 1608, 1625, 1665, 1701
FaqI	GGGAC	2 cut(s)	472, 1945
FatI	CATG	9 cut(s)	207, 331, 825, 1093, 1569, 1604, 1621, 1661, 1697
FauI	CCCGC	1 cut(s)	54
FbaI	TGATCA	2 cut(s)	1528, 1803
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	4 cut(s)	11, 693, 955, 1056
FokI	GGATG	6 cut(s)	659, 837, 944, 1001, 1234, 1397
FriOI	GRGCYC	1 cut(s)	1584
Fsp4HI	GCNGC	4 cut(s)	11, 693, 955, 1056
FspBI	CTAG	3 cut(s)	53, 254, 696
GlaI	GCGC	4 cut(s)	191, 261, 398, 1694
GluI	GCNGC	4 cut(s)	11, 693, 955, 1056
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	6 cut(s)	45, 417, 440, 651, 1215, 1582
HapII	CCGG	4 cut(s)	263, 394, 467, 1738
HgaI	GACGC	3 cut(s)	82, 335, 620
HhaI	GCGC	4 cut(s)	192, 262, 399, 1695
Hin1I	GRCGYC	1 cut(s)	612
Hin1II	CATG	9 cut(s)	211, 335, 829, 1097, 1573, 1608, 1625, 1665, 1701
Hin6I	GCGC	4 cut(s)	190, 260, 397, 1693
HinP1I	GCGC	4 cut(s)	190, 260, 397, 1693
HindIII	AAGCTT	2 cut(s)	863, 1098
HpaII	CCGG	4 cut(s)	263, 394, 467, 1738
Hpy166II	GTNNAC	3 cut(s)	20, 477, 1012
Hpy188III	TCNNGA	9 cut(s)	254, 320, 332, 581, 842, 854, 1094, 1637, 1669
Hpy8I	GTNNAC	3 cut(s)	20, 477, 1012
HpyAV	CCTTC	7 cut(s)	107, 386, 1165, 1218, 1321, 1651, 1846
HpyCH4III	ACNGT	5 cut(s)	314, 481, 1161, 1417, 1800
HpyCH4IV	ACGT	3 cut(s)	348, 371, 1869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 217, 828, 1554
HpyF3I	CTNAG	5 cut(s)	248, 636, 1191, 1684, 1773
HpySE526I	ACGT	3 cut(s)	348, 371, 1869
Hsp92I	GRCGYC	1 cut(s)	612
Hsp92II	CATG	9 cut(s)	211, 335, 829, 1097, 1573, 1608, 1625, 1665, 1701
HspAI	GCGC	4 cut(s)	190, 260, 397, 1693
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
Ksp22I	TGATCA	2 cut(s)	1528, 1803
Kzo9I	GATC	7 cut(s)	244, 844, 961, 1310, 1528, 1756, 1803
LguI	GCTCTTC	1 cut(s)	1128
LmnI	GCTCC	5 cut(s)	236, 276, 396, 469, 503
Lsp1109I	GCAGC	3 cut(s)	22, 941, 1042
LweI	GCATC	4 cut(s)	247, 346, 922, 1615
MabI	ACCWGGT	1 cut(s)	1924
MaeI	CTAG	3 cut(s)	53, 254, 696
MaeII	ACGT	3 cut(s)	348, 371, 1869
MaeIII	GTNAC	6 cut(s)	164, 344, 677, 1498, 1562, 1913
MalI	GATC	7 cut(s)	246, 846, 963, 1312, 1530, 1758, 1805
MbiI	CCGCTC	1 cut(s)	231
MboI	GATC	7 cut(s)	244, 844, 961, 1310, 1528, 1756, 1803
MflI	RGATCY	2 cut(s)	244, 844
MhlI	GDGCHC	2 cut(s)	1253, 1584
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	8 cut(s)	130, 335, 598, 683, 1081, 1150, 1538, 1652
MluNI	TGGCCA	1 cut(s)	651
MlyI	GAGTC	8 cut(s)	25, 161, 523, 554, 911, 1325, 1761, 1853
MmeI	TCCRAC	3 cut(s)	198, 766, 1744
Mox20I	TGGCCA	1 cut(s)	651
Mph1103I	ATGCAT	2 cut(s)	922, 1610
MreI	CGCCGGCG	1 cut(s)	262
MroNI	GCCGGC	1 cut(s)	262
MroXI	GAANNNNTTC	2 cut(s)	290, 303
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	7 cut(s)	606, 747, 927, 1050, 1070, 1230, 1874
MslI	CAYNNNNRTG	3 cut(s)	482, 915, 1904
Msp20I	TGGCCA	1 cut(s)	651
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	4 cut(s)	263, 394, 467, 1738
MspR9I	CCNGG	3 cut(s)	468, 1738, 1926
Mva1269I	GAATGC	1 cut(s)	883
MvaI	CCWGG	1 cut(s)	1926
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	78, 217, 828, 1554
NaeI	GCCGGC	1 cut(s)	264
NciI	CCSGG	2 cut(s)	468, 1738
NcoI	CCATGG	1 cut(s)	1569
NdeII	GATC	7 cut(s)	244, 844, 961, 1310, 1528, 1756, 1803
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	9 cut(s)	211, 335, 829, 1097, 1573, 1608, 1625, 1665, 1701
NlaIV	GGNNCC	3 cut(s)	465, 846, 1582
NmeAIII	GCCGAG	2 cut(s)	39, 48
NmuCI	GTSAC	3 cut(s)	164, 1562, 1913
NsiI	ATGCAT	2 cut(s)	922, 1610
NspI	RCATGY	2 cut(s)	211, 1665
OliI	CACNNNNGTG	1 cut(s)	482
PaeI	GCATGC	1 cut(s)	211
PagI	TCATGA	2 cut(s)	331, 1093
PciSI	GCTCTTC	1 cut(s)	1128
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PctI	GAATGC	1 cut(s)	883
PdiI	GCCGGC	1 cut(s)	264
PdmI	GAANNNNTTC	2 cut(s)	290, 303
PfeI	GAWTC	4 cut(s)	25, 271, 1811, 1955
PflMI	CCANNNNNTGG	1 cut(s)	1306
PfoI	TCCNGGA	1 cut(s)	1736
PkrI	GCNGC	4 cut(s)	12, 694, 956, 1057
PleI	GAGTC	8 cut(s)	24, 161, 522, 553, 910, 1325, 1761, 1852
PmaCI	CACGTG	1 cut(s)	372
PmlI	CACGTG	1 cut(s)	372
PpsI	GAGTC	8 cut(s)	24, 161, 522, 553, 910, 1325, 1761, 1852
Ppu21I	YACGTR	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	1924
PspCI	CACGTG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	1924
PspN4I	GGNNCC	3 cut(s)	465, 846, 1582
PspOMI	GGGCCC	1 cut(s)	1580
PspPI	GGNCC	6 cut(s)	44, 1136, 1214, 1573, 1580, 1581
PsrI	GAACNNNNNNTAC	2 cut(s)	1456, 1488
PsuI	RGATCY	2 cut(s)	244, 844
RsaI	GTAC	3 cut(s)	662, 874, 1033
RsaNI	GTAC	3 cut(s)	661, 873, 1032
RseI	CAYNNNNRTG	3 cut(s)	482, 915, 1904
SapI	GCTCTTC	1 cut(s)	1128
SaqAI	TTAA	7 cut(s)	606, 747, 927, 1050, 1070, 1230, 1874
SatI	GCNGC	4 cut(s)	11, 693, 955, 1056
Sau3AI	GATC	7 cut(s)	244, 844, 961, 1310, 1528, 1756, 1803
Sau96I	GGNCC	6 cut(s)	44, 1136, 1214, 1573, 1580, 1581
SchI	GAGTC	8 cut(s)	25, 161, 523, 554, 911, 1325, 1761, 1853
ScrFI	CCNGG	3 cut(s)	468, 1738, 1926
SduI	GDGCHC	2 cut(s)	1253, 1584
SexAI	ACCWGGT	1 cut(s)	1924
SfaNI	GCATC	4 cut(s)	247, 346, 922, 1615
SgrAI	CRCCGGYG	1 cut(s)	262
SinI	GGWCC	2 cut(s)	1136, 1573
SmiMI	CAYNNNNRTG	3 cut(s)	482, 915, 1904
SmlI	CTYRAG	4 cut(s)	235, 746, 1246, 1667
SmoI	CTYRAG	4 cut(s)	235, 746, 1246, 1667
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	8 cut(s)	130, 335, 598, 683, 1081, 1150, 1538, 1652
SsiI	CCGC	6 cut(s)	34, 47, 229, 692, 1139, 1701
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	3 cut(s)	53, 254, 696
StyD4I	CCNGG	3 cut(s)	466, 1736, 1924
StyI	CCWWGG	2 cut(s)	1569, 1576
TaaI	ACNGT	5 cut(s)	314, 481, 1161, 1417, 1800
TaiI	ACGT	3 cut(s)	351, 374, 1872
TaqI	TCGA	2 cut(s)	710, 818
TasI	AATT	8 cut(s)	130, 335, 598, 683, 1081, 1150, 1538, 1652
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	1 cut(s)	695
TfiI	GAWTC	4 cut(s)	25, 271, 1811, 1955
Tru1I	TTAA	7 cut(s)	606, 747, 927, 1050, 1070, 1230, 1874
Tru9I	TTAA	7 cut(s)	606, 747, 927, 1050, 1070, 1230, 1874
TscAI	CASTG	4 cut(s)	107, 1482, 1515, 1555
TseFI	GTSAC	3 cut(s)	164, 1562, 1913
TseI	GCWGC	3 cut(s)	10, 954, 1055
Tsp45I	GTSAC	3 cut(s)	164, 1562, 1913
TspDTI	ATGAA	8 cut(s)	348, 814, 969, 1110, 1238, 1593, 1800, 1851
TspGWI	ACGGA	3 cut(s)	189, 199, 1234
TspRI	CASTG	4 cut(s)	107, 1482, 1515, 1555
Van91I	CCANNNNNTGG	1 cut(s)	1306
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	2 cut(s)	1136, 1573
XagI	CCTNNNNNAGG	1 cut(s)	619
XapI	RAATTY	2 cut(s)	335, 1150
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	2 cut(s)	211, 1665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	19
XmnI	GAANNNNTTC	2 cut(s)	290, 303
XspI	CTAG	3 cut(s)	53, 254, 696
Zsp2I	ATGCAT	2 cut(s)	922, 1610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.