RchiOBHm_Chr7g0178881

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007511
Physical Location & Seq
Forward (+)
1394434 .. 1396997
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15941

Sequence Viewer

Length: 1053 bp
ATGGCCAGCTCTGCACATACAATGACTGGTGGGGATGGAAAGTACAGCTACTCTGTTCACTCTTATAATCAGAGAGAGGCAGCTGATCTATCAAAGAGAATGCTGGTGGAAGCCATAGTCGAAAACCTTGACATTGAAACTCAGTCTCCTACTACAAGCTCATTCCGGATTGCTGACTTAGGTTGTTCTGTTGGGCCTAAAATTTCCGCAATCAACATCATCATTGAAGCTGTAGCACAAAAATACCAGCTTATTAAAGGCCACTCTGATCTCCCAGCAGAAATTCAAGTTTACTTTAGTGATTTGGTGTCCAATGATTTCAATCATCTCTTTGCCAGTCTCCCGCAAGATAGGCAATATTTTGCGGCTGGAGTTCCGGGATCTTTTCATGGAAGATTGTTTCCTAAAGCCTCCCTAGATTTTGTTTACTCTCAGTATGCTCTCCAATGGCTTTCTAGGGTACCACCGGAGATACTTGACTCCAACTCACCTGCATTCAACAAGGGGAGGATTATGTATGGAAATTCGGCTAGTGAAGTTGGTCAGGCATTTTCGGATCAGTATGCCAAGGACATGCAGTCTTTTTTTGATGCTCGAGCCCATGAGCTTGCTCCTGGAGGGTTATTGTTGCTCTTGATTCCAGGGCGTCCGGATGGAACTGTTCCGGCACAACATTCCGTACATCCACTTTTTGAACCCATGGAGTCTAGTCTATCCGATATGGTTAATCAGGGTTTAATAAGTGGAGATAAACTTGACTCTTTCAACTTGCCGATCTACTCTCCATCCATGGAAGAGCTAAGGAAGATAATAGAAAACAGCGGGTGCTTCGATGTATTGAGGTTGGAGATCCAATTACCTGAGAGGCCAACCCCTTTGCGTAGTGAGAGTGCTAGATCAGGCTTTGAGAAAATTCTCACCGAACACTTTGGGACTGAAATTATAGAACCACTTTTCAATCGATACTCCAAGAAAGTACAAGGTCGTTCTCCCATTACTTCTTGTGATGGTATGGCTGTTGGATTGTTCGTCCTTCTCAAGCGCAATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

350

Amino Acids

38.67

Weight (kDa)

5.51

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 41 - 348 3.5e-90 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 66
AarI CACCTGC 1 cut(s) 499
Acc36I ACCTGC 1 cut(s) 499
Acc65I GGTACC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 460
AccIII TCCGGA 2 cut(s) 165, 649
AciI CCGC 4 cut(s) 207, 344, 365, 822
AclWI GGATC 3 cut(s) 388, 564, 844
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 201, 282, 523, 912
AcyI GRCGYC 1 cut(s) 646
AfaI GTAC 4 cut(s) 44, 462, 681, 978
AgsI TTSAA 8 cut(s) 137, 227, 287, 322, 499, 695, 766, 958
AhdI GACNNNNNGTC 1 cut(s) 577
AjnI CCWGG 2 cut(s) 613, 640
AluBI AGCT 8 cut(s) 9, 48, 83, 159, 230, 250, 607, 799
AluI AGCT 8 cut(s) 9, 48, 83, 159, 230, 250, 607, 799
Alw26I GTCTC 2 cut(s) 150, 344
AlwI GGATC 3 cut(s) 388, 564, 844
Ama87I CYCGRG 1 cut(s) 594
Aor13HI TCCGGA 2 cut(s) 165, 649
AoxI GGCC 4 cut(s) 3, 194, 259, 866
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 4 cut(s) 201, 282, 523, 912
Asp718I GGTACC 1 cut(s) 460
AspLEI GCGC 1 cut(s) 1044
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 480, 910
AvaI CYCGRG 1 cut(s) 594
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 601
BbvI GCAGC 1 cut(s) 92
BccI CCATC 4 cut(s) 29, 647, 793, 1001
BciT130I CCWGG 2 cut(s) 615, 642
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 2 cut(s) 150, 344
BfaI CTAG 5 cut(s) 416, 456, 531, 708, 894
BfmI CTRYAG 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 499
BisI GCNGC 2 cut(s) 81, 366
BlsI GCNGC 2 cut(s) 82, 367
Bme1390I CCNGG 3 cut(s) 378, 615, 642
BmeRI GACNNNNNGTC 1 cut(s) 577
BmeT110I CYCGRG 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 3 cut(s) 378, 615, 642
BmsI GCATC 1 cut(s) 580
BpmI CTGGAG 2 cut(s) 390, 636
Bpu10I CCTNAGC 1 cut(s) 800
BpuEI CTTGAG 1 cut(s) 1022
BpuMI CCSGG 1 cut(s) 378
Bsa29I ATCGAT 1 cut(s) 961
BsaBI GATNNNNATC 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 646
BsaJI CCNNGG 4 cut(s) 567, 641, 699, 789
BsaWI WCCGGW 3 cut(s) 165, 466, 649
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse1I ACTGG 2 cut(s) 31, 336
Bse8I GATNNNNATC 1 cut(s) 321
BseAI TCCGGA 2 cut(s) 165, 649
BseBI CCWGG 2 cut(s) 615, 642
BseCI ATCGAT 1 cut(s) 961
BseDI CCNNGG 4 cut(s) 567, 641, 699, 789
BseGI GGATG 4 cut(s) 40, 658, 682, 785
BseJI GATNNNNATC 1 cut(s) 321
BseMII CTCAG 3 cut(s) 155, 446, 852
BseNI ACTGG 2 cut(s) 31, 336
BseXI GCAGC 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 274
BshFI GGCC 4 cut(s) 5, 196, 261, 868
BshNI GGYRCC 1 cut(s) 460
BshVI ATCGAT 1 cut(s) 961
BsiHKCI CYCGRG 1 cut(s) 594
BsiSI CCGG 5 cut(s) 166, 377, 467, 650, 665
BslFI GGGAC 1 cut(s) 946
BsmAI GTCTC 2 cut(s) 150, 344
BsmFI GGGAC 1 cut(s) 946
BsmI GAATGC 2 cut(s) 105, 494
BsnI GGCC 4 cut(s) 5, 196, 261, 868
BsoBI CYCGRG 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 601
Bsp13I TCCGGA 2 cut(s) 165, 649
Bsp143I GATC 7 cut(s) 85, 268, 380, 556, 774, 849, 896
Bsp19I CCATGG 2 cut(s) 699, 789
BspACI CCGC 4 cut(s) 207, 344, 365, 822
BspANI GGCC 4 cut(s) 5, 196, 261, 868
BspCNI CTCAG 3 cut(s) 154, 445, 853
BspDI ATCGAT 1 cut(s) 961
BspEI TCCGGA 2 cut(s) 165, 649
BspLI GGNNCC 1 cut(s) 462
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 3 cut(s) 388, 564, 844
BspQI GCTCTTC 1 cut(s) 789
BspT107I GGYRCC 1 cut(s) 460
BsrI ACTGG 2 cut(s) 31, 336
BssECI CCNNGG 4 cut(s) 567, 641, 699, 789
BssMI GATC 7 cut(s) 85, 268, 380, 556, 774, 849, 896
BssNI GRCGYC 1 cut(s) 646
BssT1I CCWWGG 3 cut(s) 567, 699, 789
Bst2UI CCWGG 2 cut(s) 615, 642
Bst4CI ACNGT 1 cut(s) 661
Bst6I CTCTTC 1 cut(s) 789
BstACI GRCGYC 1 cut(s) 646
BstC8I GCNNGC 2 cut(s) 7, 609
BstDEI CTNAG 5 cut(s) 141, 178, 432, 800, 861
BstDSI CCRYGG 2 cut(s) 699, 789
BstF5I GGATG 4 cut(s) 40, 658, 682, 785
BstHHI GCGC 1 cut(s) 1044
BstKTI GATC 7 cut(s) 88, 271, 383, 559, 777, 852, 899
BstMAI GTCTC 2 cut(s) 150, 344
BstMBI GATC 7 cut(s) 85, 268, 380, 556, 774, 849, 896
BstMWI GCNNNNNNNGC 2 cut(s) 11, 352
BstNI CCWGG 2 cut(s) 615, 642
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 3 cut(s) 376, 613, 640
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 92
BstX2I RGATCY 2 cut(s) 380, 849
BstYI RGATCY 2 cut(s) 380, 849
Bsu15I ATCGAT 1 cut(s) 961
BsuRI GGCC 4 cut(s) 5, 196, 261, 868
BsuTUI ATCGAT 1 cut(s) 961
BtgI CCRYGG 2 cut(s) 699, 789
BtsCI GGATG 4 cut(s) 40, 658, 682, 785
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 2 cut(s) 7, 609
CfoI GCGC 1 cut(s) 1044
Cfr13I GGNCC 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 961
CseI GACGC 1 cut(s) 635
Csp6I GTAC 4 cut(s) 43, 461, 680, 977
CviAII CATG 5 cut(s) 389, 574, 602, 700, 790
CviQI GTAC 4 cut(s) 43, 461, 680, 977
DdeI CTNAG 5 cut(s) 141, 178, 432, 800, 861
DpnI GATC 7 cut(s) 87, 270, 382, 558, 776, 851, 898
DpnII GATC 7 cut(s) 85, 268, 380, 556, 774, 849, 896
DriI GACNNNNNGTC 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 789
Eam1105I GACNNNNNGTC 1 cut(s) 577
EarI CTCTTC 1 cut(s) 789
Eco130I CCWWGG 3 cut(s) 567, 699, 789
Eco24I GRGCYC 1 cut(s) 601
Eco88I CYCGRG 1 cut(s) 594
EcoRII CCWGG 2 cut(s) 613, 640
EcoT14I CCWWGG 3 cut(s) 567, 699, 789
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 3 cut(s) 567, 699, 789
FaeI CATG 5 cut(s) 392, 577, 605, 703, 793
FaqI GGGAC 1 cut(s) 946
FatI CATG 5 cut(s) 388, 573, 601, 699, 789
FauI CCCGC 2 cut(s) 351, 815
Fnu4HI GCNGC 2 cut(s) 81, 366
FokI GGATG 4 cut(s) 47, 665, 669, 772
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 2 cut(s) 81, 366
FspBI CTAG 5 cut(s) 416, 456, 531, 708, 894
GlaI GCGC 1 cut(s) 1043
GluI GCNGC 2 cut(s) 81, 366
GsaI CCCAGC 1 cut(s) 278
GsuI CTGGAG 2 cut(s) 390, 636
HaeIII GGCC 4 cut(s) 5, 196, 261, 868
HapII CCGG 5 cut(s) 166, 377, 467, 650, 665
HgaI GACGC 1 cut(s) 635
HhaI GCGC 1 cut(s) 1044
Hin1I GRCGYC 1 cut(s) 646
Hin1II CATG 5 cut(s) 392, 577, 605, 703, 793
Hin6I GCGC 1 cut(s) 1042
HinP1I GCGC 1 cut(s) 1042
HinfI GANTC 4 cut(s) 479, 637, 704, 758
HpaII CCGG 5 cut(s) 166, 377, 467, 650, 665
HphI GGTGA 2 cut(s) 480, 910
Hpy166II GTNNAC 3 cut(s) 58, 292, 427
Hpy188I TCNGA 4 cut(s) 72, 268, 556, 718
Hpy188III TCNNGA 3 cut(s) 166, 634, 650
Hpy8I GTNNAC 3 cut(s) 58, 292, 427
HpyAV CCTTC 1 cut(s) 1043
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4V TGCA 3 cut(s) 14, 494, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 352
HpyF3I CTNAG 5 cut(s) 141, 178, 432, 800, 861
Hsp92I GRCGYC 1 cut(s) 646
Hsp92II CATG 5 cut(s) 392, 577, 605, 703, 793
HspAI GCGC 1 cut(s) 1042
Kpn2I TCCGGA 2 cut(s) 165, 649
KpnI GGTACC 1 cut(s) 464
Kzo9I GATC 7 cut(s) 85, 268, 380, 556, 774, 849, 896
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 580
MaeI CTAG 5 cut(s) 416, 456, 531, 708, 894
MalI GATC 7 cut(s) 87, 270, 382, 558, 776, 851, 898
MboI GATC 7 cut(s) 85, 268, 380, 556, 774, 849, 896
MboII GAAGA 3 cut(s) 405, 806, 817
MflI RGATCY 2 cut(s) 380, 849
MhlI GDGCHC 1 cut(s) 601
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 201, 282, 523, 854, 912, 939
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 473, 713, 752
MmeI TCCRAC 3 cut(s) 507, 825, 1000
MnlI CCTC 6 cut(s) 70, 421, 501, 611, 834, 858
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 2 cut(s) 165, 649
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 255, 726, 737, 1051
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 83, 822
MspI CCGG 5 cut(s) 166, 377, 467, 650, 665
MspR9I CCNGG 3 cut(s) 378, 615, 642
Mva1269I GAATGC 2 cut(s) 105, 494
MvaI CCWGG 2 cut(s) 615, 642
MwoI GCNNNNNNNGC 2 cut(s) 11, 352
NciI CCSGG 1 cut(s) 378
NcoI CCATGG 2 cut(s) 699, 789
NdeII GATC 7 cut(s) 85, 268, 380, 556, 774, 849, 896
NlaIII CATG 5 cut(s) 392, 577, 605, 703, 793
NlaIV GGNNCC 1 cut(s) 462
NspI RCATGY 1 cut(s) 577
PaeR7I CTCGAG 1 cut(s) 594
PaqCI CACCTGC 1 cut(s) 499
PciSI GCTCTTC 1 cut(s) 789
PctI GAATGC 2 cut(s) 105, 494
PfeI GAWTC 1 cut(s) 637
PfoI TCCNGGA 2 cut(s) 376, 613
PkrI GCNGC 2 cut(s) 82, 367
PleI GAGTC 3 cut(s) 473, 712, 752
PpsI GAGTC 3 cut(s) 473, 712, 752
PsiI TTATAA 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 613, 640
PspFI CCCAGC 1 cut(s) 274
PspGI CCWGG 2 cut(s) 613, 640
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 1 cut(s) 194
PspXI VCTCGAGB 1 cut(s) 594
PsuI RGATCY 2 cut(s) 380, 849
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 4 cut(s) 44, 462, 681, 978
RsaNI GTAC 4 cut(s) 43, 461, 680, 977
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 4 cut(s) 255, 726, 737, 1051
SatI GCNGC 2 cut(s) 81, 366
Sau3AI GATC 7 cut(s) 85, 268, 380, 556, 774, 849, 896
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 3 cut(s) 473, 713, 752
ScrFI CCNGG 3 cut(s) 378, 615, 642
SduI GDGCHC 1 cut(s) 601
SfaNI GCATC 1 cut(s) 580
SfcI CTRYAG 1 cut(s) 231
Sfr274I CTCGAG 1 cut(s) 594
SlaI CTCGAG 1 cut(s) 594
SmlI CTYRAG 2 cut(s) 594, 1037
SmoI CTYRAG 2 cut(s) 594, 1037
Sse9I AATT 6 cut(s) 201, 282, 523, 854, 912, 939
SsiI CCGC 4 cut(s) 207, 344, 365, 822
SspI AATATT 1 cut(s) 359
SspMI CTAG 5 cut(s) 416, 456, 531, 708, 894
StyD4I CCNGG 3 cut(s) 376, 613, 640
StyI CCWWGG 3 cut(s) 567, 699, 789
TaaI ACNGT 1 cut(s) 661
TaqI TCGA 4 cut(s) 120, 595, 831, 961
TasI AATT 6 cut(s) 201, 282, 523, 854, 912, 939
TatI WGTACW 2 cut(s) 42, 976
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 4 cut(s) 255, 726, 737, 1051
Tru9I TTAA 4 cut(s) 255, 726, 737, 1051
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 377
TspGWI ACGGA 1 cut(s) 667
XapI RAATTY 4 cut(s) 201, 282, 523, 912
XceI RCATGY 1 cut(s) 577
XhoI CTCGAG 1 cut(s) 594
XspI CTAG 5 cut(s) 416, 456, 531, 708, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.