Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007511

Physical Location & Seq

Genomic Coordinates Reverse (-)

67335776 .. 67336963

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005396

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGATGCTAAAGAACAATTATTTACTGCAGAGGAAGGCAGCTAACAATGTCAAGGCAATGCTGGTTGAGGCCATTCTTGAAAACCTTCAGATTGGTAATCTCTGTAGTACTACTAATTCAAACTCATTCTGTATTGCTGATTTTGGTTGTTCCGTTGGTCCAAACACATTCATTGCAGTCAATAATATCATAGAAACATTAACACAAAAATTCGAGATCGAAGGCCAATCTTCACTTCTCCCAGAATTCCATGTATACTTCAATGACCATGTTTCAAACGACTTCAATATACTCTTCTCAAAGCTTCCCCAGAATCAGCAATGCTATGCAGCCGGAGTTCCAGGTTCATTTCATGGAAGACTGTTTCCTAAGGACTCCCTCAATTTTACTTGCTCTGCCTATTCTGTTTTGTGGCTTTCTAAGGCACCACAGACATCACAAGAAGTTGTTCCGGGAGGACTAATGGTGCTTCTCATATCTGGCCGGCCAGATGGGACACTTCCTCAACAATATTCCCTTGGTCCCCTTTACGACGCTGTCGAATCTTGCCTTCTTGATATGGTTGATGAGGTACGTATGGTATTACTGGAAAATGGGTGTTTTGAGATTGCAAGATTAGAAGAGCAACCTCCAATGTGCGTCCCTTTGAATACAACGCCAGAGCTTAGAGCTGGCATGGAGAGCATTATCACAAAACATTTCGGTTGCGACATTGTAGAGCCGCTTTTTGATCGATACTCGAAGAAAATTGCTGCACAGTCGCGTCCGCCCCTCACTGCTAAGGATGGCTTGGCTGTCGGATTATTCATCCTTCTCAAGCGCAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

277

Amino Acids

30.59

Weight (kDa)

5.63

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	33 - 144	1.7e-42	SAM dependent carboxyl methyltransferase
Methyltransf_7	PF03492	189 - 274	2.1e-06	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007511)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g16990
malus_domestica	MD06G1224000.v1.1 MD06G1224100.v1.1
prunus_persica	Prupe.5G229100_v2.0.a1 Prupe.8G068600_v2.0.a1
pyrus_communis	pycom14g19440
rosa_chinensis	RchiOBHm_Chr7g0178881 RchiOBHm_Chr7g0178891 RchiOBHm_Chr7g0178921
rosa_laevigata	RLG00000005395 RLG00000005396 RLG00000005397
rosa_roxburghii	Rroxscaffold_3G00274580
rosa_rugosa	Rorug06G0420500
rosa_samantha	Rh7AG019900 Rh7BG019400 Rh7BG019500 Rh7CG020000 Rh7CG020100 Rh7CG020300 Rh7CG020500 Rh7DG019900 Rh7DG020000 Rh7DG020300
rosa_wichuraiana	Rw7G001610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	763
AciI	CCGC	2 cut(s)	722, 767
AcoI	YGGCCR	2 cut(s)	481, 485
AcsI	RAATTY	2 cut(s)	209, 245
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	2 cut(s)	109, 573
AgsI	TTSAA	6 cut(s)	80, 120, 262, 276, 286, 649
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	4 cut(s)	41, 304, 664, 671
AluI	AGCT	4 cut(s)	41, 304, 664, 671
AoxI	GGCC	4 cut(s)	69, 223, 481, 485
ApeKI	GCWGC	3 cut(s)	38, 329, 752
ApoI	RAATTY	2 cut(s)	209, 245
Asp700I	GAANNNNTTC	2 cut(s)	84, 447
AspLEI	GCGC	1 cut(s)	822
AspS9I	GGNCC	2 cut(s)	158, 521
AsuC2I	CCSGG	1 cut(s)	453
AvaII	GGWCC	2 cut(s)	158, 521
AxyI	CCTNAGG	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	50, 341, 739
BccI	CCATC	2 cut(s)	485, 779
BciT130I	CCWGG	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	453
BfmI	CTRYAG	2 cut(s)	26, 103
BisI	GCNGC	4 cut(s)	39, 330, 722, 753
BlsI	GCNGC	4 cut(s)	40, 331, 723, 754
BmcAI	AGTACT	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	342, 453
Bme18I	GGWCC	2 cut(s)	158, 521
BmgT120I	GGNCC	2 cut(s)	158, 521
BmiI	GGNNCC	2 cut(s)	426, 523
BmrFI	CCNGG	2 cut(s)	342, 453
BpiI	GAAGAC	1 cut(s)	364
Bpu10I	CCTNAGC	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	800
BpuMI	CCSGG	1 cut(s)	453
Bsa29I	ATCGAT	1 cut(s)	733
BsaAI	YACGTR	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	517
Bse118I	RCCGGY	1 cut(s)	483
Bse1I	ACTGG	1 cut(s)	591
Bse21I	CCTNAGG	1 cut(s)	369
Bse3DI	GCAATG	3 cut(s)	63, 171, 326
BseBI	CCWGG	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	733
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	2 cut(s)	790, 807
BseMI	GCAATG	3 cut(s)	63, 171, 326
BseNI	ACTGG	1 cut(s)	591
BseXI	GCAGC	3 cut(s)	50, 341, 739
BsgI	GTGCAG	1 cut(s)	738
Bsh1236I	CGCG	1 cut(s)	763
BshFI	GGCC	4 cut(s)	71, 225, 483, 487
BshNI	GGYRCC	1 cut(s)	424
BshVI	ATCGAT	1 cut(s)	733
BsiSI	CCGG	3 cut(s)	333, 452, 484
BslFI	GGGAC	3 cut(s)	507, 508, 626
BsmFI	GGGAC	3 cut(s)	507, 508, 626
BsnI	GGCC	4 cut(s)	71, 225, 483, 487
Bsp143I	GATC	2 cut(s)	216, 730
BspACI	CCGC	2 cut(s)	722, 767
BspANI	GGCC	4 cut(s)	71, 225, 483, 487
BspDI	ATCGAT	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	763
BspLI	GGNNCC	2 cut(s)	426, 523
BspMAI	CTGCAG	1 cut(s)	30
BspQI	GCTCTTC	1 cut(s)	615
BspT107I	GGYRCC	1 cut(s)	424
BsrDI	GCAATG	3 cut(s)	63, 171, 326
BsrFI	RCCGGY	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	591
BssAI	RCCGGY	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	2 cut(s)	216, 730
BssNAI	GTATAC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	517
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	363, 759
Bst6I	CTCTTC	2 cut(s)	299, 615
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	2 cut(s)	485, 673
BstDEI	CTNAG	4 cut(s)	369, 420, 665, 780
BstF5I	GGATG	2 cut(s)	790, 807
BstFNI	CGCG	1 cut(s)	763
BstHHI	GCGC	1 cut(s)	822
BstKTI	GATC	2 cut(s)	219, 733
BstMBI	GATC	2 cut(s)	216, 730
BstMWI	GCNNNNNNNGC	1 cut(s)	681
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	340, 451
BstSFI	CTRYAG	2 cut(s)	26, 103
BstSNI	TACGTA	1 cut(s)	575
BstUI	CGCG	1 cut(s)	763
BstV1I	GCAGC	3 cut(s)	50, 341, 739
BstV2I	GAAGAC	1 cut(s)	364
BstZ17I	GTATAC	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	733
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	4 cut(s)	71, 225, 483, 487
BsuTUI	ATCGAT	1 cut(s)	733
BtsCI	GGATG	2 cut(s)	790, 807
BtsI	GCAGTG	1 cut(s)	774
BtsIMutI	CAGTG	1 cut(s)	774
Cac8I	GCNNGC	2 cut(s)	485, 673
CfoI	GCGC	1 cut(s)	822
Cfr10I	RCCGGY	1 cut(s)	483
Cfr13I	GGNCC	2 cut(s)	158, 521
ClaI	ATCGAT	1 cut(s)	733
CseI	GACGC	3 cut(s)	542, 628, 752
Csp6I	GTAC	2 cut(s)	108, 572
CviAII	CATG	4 cut(s)	251, 269, 353, 676
CviQI	GTAC	2 cut(s)	108, 572
DdeI	CTNAG	4 cut(s)	369, 420, 665, 780
DpnI	GATC	2 cut(s)	218, 732
DpnII	GATC	2 cut(s)	216, 730
EaeI	YGGCCR	2 cut(s)	481, 485
Eam1104I	CTCTTC	2 cut(s)	299, 615
EarI	CTCTTC	2 cut(s)	299, 615
EciI	GGCGGA	1 cut(s)	756
Eco105I	TACGTA	1 cut(s)	575
Eco130I	CCWWGG	1 cut(s)	517
Eco47I	GGWCC	2 cut(s)	158, 521
Eco57I	CTGAAG	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	4 cut(s)	254, 272, 356, 679
FalI	AAGNNNNNCTT	2 cut(s)	773, 805
FaqI	GGGAC	3 cut(s)	507, 508, 626
FatI	CATG	4 cut(s)	250, 268, 352, 675
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	4 cut(s)	39, 330, 722, 753
FokI	GGATG	2 cut(s)	794, 797
FseI	GGCCGGCC	1 cut(s)	487
Fsp4HI	GCNGC	4 cut(s)	39, 330, 722, 753
GlaI	GCGC	1 cut(s)	821
GluI	GCNGC	4 cut(s)	39, 330, 722, 753
HaeIII	GGCC	4 cut(s)	71, 225, 483, 487
HapII	CCGG	3 cut(s)	333, 452, 484
HgaI	GACGC	3 cut(s)	542, 628, 752
HhaI	GCGC	1 cut(s)	822
Hin1II	CATG	4 cut(s)	254, 272, 356, 679
Hin6I	GCGC	1 cut(s)	820
HinP1I	GCGC	1 cut(s)	820
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	3 cut(s)	313, 374, 542
HpaII	CCGG	3 cut(s)	333, 452, 484
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	90, 800
Hpy188III	TCNNGA	3 cut(s)	77, 214, 554
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	5 cut(s)	28, 95, 215, 560, 821
HpyCH4III	ACNGT	2 cut(s)	363, 759
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	5 cut(s)	28, 176, 329, 611, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	681
HpyF3I	CTNAG	4 cut(s)	369, 420, 665, 780
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	4 cut(s)	254, 272, 356, 679
HspAI	GCGC	1 cut(s)	820
KroI	GCCGGC	1 cut(s)	483
KroNI	GCCGGC	1 cut(s)	485
Kzo9I	GATC	2 cut(s)	216, 730
LguI	GCTCTTC	1 cut(s)	615
Lsp1109I	GCAGC	3 cut(s)	50, 341, 739
MaeII	ACGT	1 cut(s)	574
MalI	GATC	2 cut(s)	218, 732
MboI	GATC	2 cut(s)	216, 730
MboII	GAAGA	5 cut(s)	222, 286, 369, 632, 754
MluCI	AATT	6 cut(s)	16, 115, 209, 245, 382, 747
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	778
MnlI	CCTC	8 cut(s)	24, 61, 389, 449, 513, 562, 639, 782
MroNI	GCCGGC	1 cut(s)	483
MroXI	GAANNNNTTC	2 cut(s)	84, 447
MseI	TTAA	1 cut(s)	200
MspI	CCGG	3 cut(s)	333, 452, 484
MspR9I	CCNGG	2 cut(s)	342, 453
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	763
MwoI	GCNNNNNNNGC	1 cut(s)	681
NaeI	GCCGGC	1 cut(s)	485
NciI	CCSGG	1 cut(s)	453
NdeII	GATC	2 cut(s)	216, 730
NgoMIV	GCCGGC	1 cut(s)	483
NlaIII	CATG	4 cut(s)	254, 272, 356, 679
NlaIV	GGNNCC	2 cut(s)	426, 523
PciSI	GCTCTTC	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PdiI	GCCGGC	1 cut(s)	485
PdmI	GAANNNNTTC	2 cut(s)	84, 447
PfeI	GAWTC	2 cut(s)	313, 542
PflFI	GACNNNGTC	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	4 cut(s)	40, 331, 723, 754
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
Ppu21I	YACGTR	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	426, 523
PspPI	GGNCC	2 cut(s)	158, 521
PstI	CTGCAG	1 cut(s)	30
PsyI	GACNNNGTC	1 cut(s)	536
RigI	GGCCGGCC	1 cut(s)	487
RsaI	GTAC	2 cut(s)	109, 573
RsaNI	GTAC	2 cut(s)	108, 572
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	4 cut(s)	39, 330, 722, 753
Sau3AI	GATC	2 cut(s)	216, 730
Sau96I	GGNCC	2 cut(s)	158, 521
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	342, 453
SetI	ASST	9 cut(s)	43, 87, 306, 346, 573, 577, 631, 666, 673
SfcI	CTRYAG	2 cut(s)	26, 103
SinI	GGWCC	2 cut(s)	158, 521
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SnaBI	TACGTA	1 cut(s)	575
Sse9I	AATT	6 cut(s)	16, 115, 209, 245, 382, 747
SsiI	CCGC	2 cut(s)	722, 767
SspI	AATATT	1 cut(s)	512
StyD4I	CCNGG	2 cut(s)	340, 451
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	2 cut(s)	363, 759
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	5 cut(s)	213, 219, 540, 733, 740
TasI	AATT	6 cut(s)	16, 115, 209, 245, 382, 747
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	724
TfiI	GAWTC	2 cut(s)	313, 542
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	781
TseI	GCWGC	3 cut(s)	38, 329, 752
TspDTI	ATGAA	4 cut(s)	160, 336, 341, 796
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	781
Tth111I	GACNNNGTC	1 cut(s)	536
VpaK11BI	GGWCC	2 cut(s)	158, 521
XapI	RAATTY	2 cut(s)	209, 245
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	2 cut(s)	84, 447
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.