Rh7AG019900

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007511
Physical Location & Seq
Forward (+)
1317238 .. 1317682
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG019900.1

Sequence Viewer

Length: 354 bp
ATGGAGTCTAGTCTATCCGATATGGTTAATCAGGGTTTAATAAGTGGAGATAAACTTGACTCTTTCAACTTGCCTATCTACTCTCCATCCATGGAAGAGCTAAGGAAGATAATAGAAAACAGCGAGTGCTTTGATGTATTAAGGTTGGAGATCCAATTACCTGAGAGGCCAACCCCTTTGCGTAGTGAGTATGCTAGATCAGGCTTTGAGAAAATTCTCACCAAACACTTTGGGACTGAAATTATAGAACCACTTTTCGATCGATACTCCAAGAAAGTACAAGGTCGTTCTCCCATTACTTCTTGTGATGGTATGGCTGTTGAATTGTTCGTTCTTCTCAAGCGCAATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

117

Amino Acids

13.38

Weight (kDa)

5.22

Isoelectric Point (pI)

77.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 115 1.2e-23 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 213
AfaI GTAC 1 cut(s) 279
AgsI TTSAA 2 cut(s) 67, 323
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 213
AspLEI GCGC 1 cut(s) 345
AsuHPI GGTGA 1 cut(s) 211
BccI CCATC 2 cut(s) 94, 302
BfaI CTAG 2 cut(s) 9, 195
Bpu10I CCTNAGC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 169
BshVI ATCGAT 1 cut(s) 262
BsiEI CGRYCG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 1 cut(s) 169
Bsp143I GATC 3 cut(s) 150, 197, 259
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 154
BspDI ATCGAT 1 cut(s) 262
BspPI GGATC 1 cut(s) 145
BspQI GCTCTTC 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 150, 197, 259
BssT1I CCWWGG 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 101, 162
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 3 cut(s) 153, 200, 262
BstMBI GATC 3 cut(s) 150, 197, 259
BstMCI CGRYCG 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 1 cut(s) 169
BsuTUI ATCGAT 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 86
CfoI GCGC 1 cut(s) 345
ClaI ATCGAT 1 cut(s) 262
Csp6I GTAC 1 cut(s) 278
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 100, 169, 204, 317
CviKI_1 RGCY 4 cut(s) 100, 169, 204, 317
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 2 cut(s) 101, 162
DpnI GATC 3 cut(s) 152, 199, 261
DpnII GATC 3 cut(s) 150, 197, 259
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 94
FaiI YATR 5 cut(s) 23, 92, 192, 245, 314
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 90
FokI GGATG 1 cut(s) 73
FspBI CTAG 2 cut(s) 9, 195
GlaI GCGC 1 cut(s) 344
HaeIII GGCC 1 cut(s) 169
HhaI GCGC 1 cut(s) 345
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 2 cut(s) 5, 59
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 19
HpyF3I CTNAG 2 cut(s) 101, 162
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 343
Kzo9I GATC 3 cut(s) 150, 197, 259
LguI GCTCTTC 1 cut(s) 90
LpnPI CCDG 3 cut(s) 17, 174, 186
MaeI CTAG 2 cut(s) 9, 195
MalI GATC 3 cut(s) 152, 199, 261
MboI GATC 3 cut(s) 150, 197, 259
MboII GAAGA 3 cut(s) 107, 118, 326
MflI RGATCY 1 cut(s) 150
MluCI AATT 4 cut(s) 155, 213, 240, 323
MlyI GAGTC 2 cut(s) 14, 53
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 1 cut(s) 159
MseI TTAA 4 cut(s) 27, 38, 140, 352
NcoI CCATGG 1 cut(s) 90
NdeII GATC 3 cut(s) 150, 197, 259
NlaIII CATG 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 90
Ple19I CGATCG 1 cut(s) 262
PleI GAGTC 2 cut(s) 13, 53
PpsI GAGTC 2 cut(s) 13, 53
PsuI RGATCY 1 cut(s) 150
PvuI CGATCG 1 cut(s) 262
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 4 cut(s) 27, 38, 140, 352
Sau3AI GATC 3 cut(s) 150, 197, 259
SchI GAGTC 2 cut(s) 14, 53
SetI ASST 4 cut(s) 102, 146, 163, 286
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 4 cut(s) 155, 213, 240, 323
SspMI CTAG 2 cut(s) 9, 195
StyI CCWWGG 1 cut(s) 90
TaqI TCGA 2 cut(s) 258, 262
TasI AATT 4 cut(s) 155, 213, 240, 323
TatI WGTACW 1 cut(s) 277
Tru1I TTAA 4 cut(s) 27, 38, 140, 352
Tru9I TTAA 4 cut(s) 27, 38, 140, 352
XapI RAATTY 1 cut(s) 213
XspI CTAG 2 cut(s) 9, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.