Rroxscaffold_3G00274580

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007511
Physical Location & Seq
Reverse (-)
66207415 .. 66208277
863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00274580.1

Sequence Viewer

Length: 501 bp
ATGCAGCCGGAGTTCCAGTCTTTTCTTGATGCTCGAGCACAAGAAGTTGTTCCGGGAGGACTAATGGTGCTTCTTATATCTGGCCGGCCAGATGGGTCGCTTCCTCAACAGTATTCTCATGGTCCCCTTTACTACCCTGTTGAATCTTGCCTTCTTGATATGGTTGATGAGGGCTTATTAAGCGAAGATAAGATCGACTCTTTCAACATGCCAACTTATAGTCCATCAATGGAGGAGGTAGGGATGGTGGTAGTGAAAAATGGGTGTTTTGATATTGCAAGATTGGAAGTGCAACCTCCAGTGTCCGTGCCTTCGAGTACAACGCAAGAGCTTAGAGCTGGCATGGAGAGCATCATCACAAACCATTTCGGTTGCGAAATTGTAGAGCCGCTTTTTGATCGATGCTCGAAGAAAATAATTGCTGCACAGCCGCGTCCACCCCTCACTACTGCTAAGGATGGCTTGGCTGGTTCATTATTCATCCTTCTCAAGCGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

166

Amino Acids

18.22

Weight (kDa)

4.8

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 3 - 141 5e-35 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 433
AciI CCGC 2 cut(s) 389, 431
AcoI YGGCCR 2 cut(s) 82, 86
AfaI GTAC 1 cut(s) 319
AgsI TTSAA 2 cut(s) 143, 205
AluBI AGCT 2 cut(s) 331, 338
AluI AGCT 2 cut(s) 331, 338
Alw21I GWGCWC 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 2 cut(s) 82, 86
ApeKI GCWGC 2 cut(s) 4, 422
Asp700I GAANNNNTTC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 54
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 16, 409
BccI CCATC 4 cut(s) 86, 232, 238, 452
BcnI CCSGG 1 cut(s) 54
BisI GCNGC 4 cut(s) 5, 389, 423, 431
BlsI GCNGC 4 cut(s) 6, 390, 424, 432
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 54
BmsI GCATC 3 cut(s) 19, 360, 392
BpmI CTGGAG 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 54
Bsa29I ATCGAT 1 cut(s) 400
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 2 cut(s) 16, 299
BseCI ATCGAT 1 cut(s) 400
BseGI GGATG 3 cut(s) 249, 463, 480
BseNI ACTGG 2 cut(s) 16, 299
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 2 cut(s) 16, 409
BsgI GTGCAG 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 433
BshFI GGCC 2 cut(s) 84, 88
BshVI ATCGAT 1 cut(s) 400
BsiHKAI GWGCWC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 3 cut(s) 8, 53, 85
BslFI GGGAC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 2 cut(s) 84, 88
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 2 cut(s) 192, 397
BspACI CCGC 2 cut(s) 389, 431
BspANI GGCC 2 cut(s) 84, 88
BspDI ATCGAT 1 cut(s) 400
BspFNI CGCG 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 124
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 2 cut(s) 16, 299
BssAI RCCGGY 1 cut(s) 84
BssMI GATC 2 cut(s) 192, 397
Bst4CI ACNGT 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 86, 340
BstDEI CTNAG 2 cut(s) 332, 453
BstF5I GGATG 3 cut(s) 249, 463, 480
BstFNI CGCG 1 cut(s) 433
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 2 cut(s) 195, 400
BstMBI GATC 2 cut(s) 192, 397
BstMWI GCNNNNNNNGC 2 cut(s) 180, 348
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 52
BstUI CGCG 1 cut(s) 433
BstV1I GCAGC 2 cut(s) 16, 409
Bsu15I ATCGAT 1 cut(s) 400
BsuRI GGCC 2 cut(s) 84, 88
BsuTUI ATCGAT 1 cut(s) 400
BtsCI GGATG 3 cut(s) 249, 463, 480
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 86, 340
CfoI GCGC 1 cut(s) 495
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 122
ClaI ATCGAT 1 cut(s) 400
CseI GACGC 1 cut(s) 422
Csp6I GTAC 1 cut(s) 318
CviAII CATG 3 cut(s) 119, 208, 343
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 2 cut(s) 332, 453
DpnI GATC 2 cut(s) 194, 399
DpnII GATC 2 cut(s) 192, 397
EaeI YGGCCR 2 cut(s) 82, 86
Eco47I GGWCC 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 33
FaeI CATG 3 cut(s) 122, 211, 346
FaiI YATR 6 cut(s) 77, 120, 161, 209, 219, 344
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FaqI GGGAC 1 cut(s) 108
FatI CATG 3 cut(s) 118, 207, 342
Fnu4HI GCNGC 4 cut(s) 5, 389, 423, 431
FokI GGATG 3 cut(s) 256, 467, 470
FseI GGCCGGCC 1 cut(s) 88
Fsp4HI GCNGC 4 cut(s) 5, 389, 423, 431
GlaI GCGC 1 cut(s) 494
GluI GCNGC 4 cut(s) 5, 389, 423, 431
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 2 cut(s) 84, 88
HapII CCGG 3 cut(s) 8, 53, 85
HgaI GACGC 1 cut(s) 422
HhaI GCGC 1 cut(s) 495
Hin1II CATG 3 cut(s) 122, 211, 346
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HinfI GANTC 2 cut(s) 143, 197
HpaII CCGG 3 cut(s) 8, 53, 85
Hpy166II GTNNAC 1 cut(s) 437
Hpy188III TCNNGA 2 cut(s) 26, 155
Hpy8I GTNNAC 1 cut(s) 437
HpyAV CCTTC 3 cut(s) 161, 321, 494
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 4 cut(s) 4, 278, 292, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 348
HpyF3I CTNAG 2 cut(s) 332, 453
Hsp92II CATG 3 cut(s) 122, 211, 346
HspAI GCGC 1 cut(s) 493
KroI GCCGGC 1 cut(s) 84
KroNI GCCGGC 1 cut(s) 86
Kzo9I GATC 2 cut(s) 192, 397
Lsp1109I GCAGC 2 cut(s) 16, 409
LweI GCATC 3 cut(s) 19, 360, 392
MalI GATC 2 cut(s) 194, 399
MboI GATC 2 cut(s) 192, 397
MboII GAAGA 2 cut(s) 197, 421
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 378, 417
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 7 cut(s) 50, 114, 163, 226, 229, 306, 452
MroNI GCCGGC 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 1 cut(s) 179
MspI CCGG 3 cut(s) 8, 53, 85
MspR9I CCNGG 1 cut(s) 54
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 2 cut(s) 180, 348
NaeI GCCGGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 54
NdeII GATC 2 cut(s) 192, 397
NgoMIV GCCGGC 1 cut(s) 84
NlaIII CATG 3 cut(s) 122, 211, 346
NlaIV GGNNCC 1 cut(s) 124
NspI RCATGY 1 cut(s) 211
PaeR7I CTCGAG 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 4 cut(s) 6, 390, 424, 432
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 122
PspXI VCTCGAGB 1 cut(s) 33
RigI GGCCGGCC 1 cut(s) 88
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 4 cut(s) 5, 389, 423, 431
Sau3AI GATC 2 cut(s) 192, 397
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 1 cut(s) 40
SetI ASST 4 cut(s) 240, 298, 333, 340
SfaNI GCATC 3 cut(s) 19, 360, 392
Sfr274I CTCGAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 2 cut(s) 33, 488
SmoI CTYRAG 2 cut(s) 33, 488
Sse9I AATT 2 cut(s) 378, 417
SsiI CCGC 2 cut(s) 389, 431
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 111
TaqI TCGA 5 cut(s) 34, 195, 314, 400, 407
TasI AATT 2 cut(s) 378, 417
TatI WGTACW 1 cut(s) 317
TauI GCSGC 2 cut(s) 391, 433
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 306
TseI GCWGC 2 cut(s) 4, 422
TspDTI ATGAA 2 cut(s) 462, 469
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 122
XceI RCATGY 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.