Rh7BG019400

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007511
Physical Location & Seq
Forward (+)
1243359 .. 1243803
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG019400.1

Sequence Viewer

Length: 354 bp
ATGGAGTCTAGTCTATCCGATATGGTTAATGAGGGTTTAATAAGTGGAGATAAACTTGACTCTTTCAACTTGCCTATCTACTCTCCATCCATGGAAGAGCTAAGGAAGATAATAGAAAACAGCGACTGCTTTGATGTATTAAGGTTGGAGATCCAATTACCTGAGAGGGCAACCCCTTTGCGTAGTGAGCAAGCCAGATCAGGCTTTGAGAAAATTCTCATCAAACACTTTGGGACTGAAATTATAGAACCACTTTTCGATCGATACTCCAAGAAAGTAAAAGGTCGTTCTCCCATTACTTCTTGTGATGGTATGGCTGTTGGATTGTTCGTCCTTCTCAAGCGCAATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

117

Amino Acids

13.25

Weight (kDa)

5.46

Isoelectric Point (pI)

68.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 115 4.1e-23 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 213
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
AlwI GGATC 1 cut(s) 145
AlwNI CAGNNNCTG 1 cut(s) 126
ApoI RAATTY 1 cut(s) 213
AspLEI GCGC 1 cut(s) 345
BccI CCATC 2 cut(s) 94, 302
BfaI CTAG 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 262
BshVI ATCGAT 1 cut(s) 262
BsiEI CGRYCG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 247
Bsp143I GATC 3 cut(s) 150, 197, 259
Bsp19I CCATGG 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 154
BspDI ATCGAT 1 cut(s) 262
BspPI GGATC 1 cut(s) 145
BspQI GCTCTTC 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 150, 197, 259
BssT1I CCWWGG 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 101, 162
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 3 cut(s) 153, 200, 262
BstMBI GATC 3 cut(s) 150, 197, 259
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
Bsu15I ATCGAT 1 cut(s) 262
BsuTUI ATCGAT 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 126
CfoI GCGC 1 cut(s) 345
ClaI ATCGAT 1 cut(s) 262
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 100, 194, 204, 317
CviKI_1 RGCY 4 cut(s) 100, 194, 204, 317
DdeI CTNAG 2 cut(s) 101, 162
DpnI GATC 3 cut(s) 152, 199, 261
DpnII GATC 3 cut(s) 150, 197, 259
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 94
FaiI YATR 4 cut(s) 23, 92, 245, 314
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 90
FokI GGATG 1 cut(s) 73
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 344
HhaI GCGC 1 cut(s) 345
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 2 cut(s) 5, 59
Hpy188I TCNGA 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 2 cut(s) 101, 162
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 343
Kzo9I GATC 3 cut(s) 150, 197, 259
LguI GCTCTTC 1 cut(s) 90
LpnPI CCDG 3 cut(s) 174, 186, 208
MaeI CTAG 1 cut(s) 9
MalI GATC 3 cut(s) 152, 199, 261
MboI GATC 3 cut(s) 150, 197, 259
MboII GAAGA 2 cut(s) 107, 118
MflI RGATCY 1 cut(s) 150
MluCI AATT 3 cut(s) 155, 213, 240
MlyI GAGTC 2 cut(s) 14, 53
MmeI TCCRAC 2 cut(s) 126, 301
MnlI CCTC 2 cut(s) 25, 159
MseI TTAA 4 cut(s) 27, 38, 140, 352
MwoI GCNNNNNNNGC 1 cut(s) 187
NcoI CCATGG 1 cut(s) 90
NdeII GATC 3 cut(s) 150, 197, 259
NlaIII CATG 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 90
Ple19I CGATCG 1 cut(s) 262
PleI GAGTC 2 cut(s) 13, 53
PpsI GAGTC 2 cut(s) 13, 53
PstNI CAGNNNCTG 1 cut(s) 126
PsuI RGATCY 1 cut(s) 150
PvuI CGATCG 1 cut(s) 262
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 4 cut(s) 27, 38, 140, 352
Sau3AI GATC 3 cut(s) 150, 197, 259
SchI GAGTC 2 cut(s) 14, 53
SetI ASST 4 cut(s) 102, 146, 163, 286
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 3 cut(s) 155, 213, 240
SspMI CTAG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 90
TaqI TCGA 2 cut(s) 258, 262
TasI AATT 3 cut(s) 155, 213, 240
Tru1I TTAA 4 cut(s) 27, 38, 140, 352
Tru9I TTAA 4 cut(s) 27, 38, 140, 352
XapI RAATTY 1 cut(s) 213
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.