RLG00000005395

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007511
Physical Location & Seq
Reverse (-)
67323735 .. 67325591
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005395

Sequence Viewer

Length: 1017 bp
ATGCTAGTTCTTCTTATTTCAAAGGTTGTTGGTGATGCATTCAACGAAGGCTTGTATGAAGGCTTCCCTGTGATTGATCATTCTAGAAATGGTGCATTGAAAATATATGCCGAGATATTCTGTTTCCTGATACAAGTGAAACTTGCTCTATTTTCAATGACTGCTGTGTGGTGCCAATTGAAGATGCAGGATCTGGTCCACTTGATTAGTCGGAATAACCACTCTGAGCATTATGAAAAGGAAAGATGTGCAGCTGATACTTCAAAGGGAACCCTAGTTGCAAAAATAGTCGAAAACCTTGCCATTGAAAATCTGTCTTCAACCACGGTCCGAATTGCTGATCTAGGTTGTTCCGTTGGACCTAACACATTCATTGCAGTCGAGACCATCATTGAAGCGATATCACAGAAATACCAAACAACCAAAGGCCACTCTGGCGATTTCCCTGAATATCAAGTATACTTCAGTGATGTCGTTTCTAATGACTTCAATCATCTCTTTACCAATCTCCCTCAACATAAGCAATACTTCGCTGCAGCAGTTCGGGGGAGTTTTCATGGAAGATTGTTTCCCAAGGCCTCTCTTGATATTGTTTACTCCGCATATGCTATCCAGTGGCTTTCTAAGACACCACAAGAGCTACTTGACTCGAACTCTCCTGCATTTAACAAGGGGAGGATTTTGTATGGCAAATCACCTGATGAAGTTGCTCAAGCATATGGGGTTCAGTATGCCAAGGGCATTCAGTGTTTTCTTCGTGCTCGAGCACAAGAGCTTGTTCCTCAAGGATTAATGGTTCTCTTGGTTCCAGGACGTCCAGACGGAATGAGTCCACAACAGCATTCTCCTACCCCTCTTTTTGAACCCGGTTTACTGAGCGAAGATAAATTTGACTCATTTAACTTACCAATGCATTGCCCATCCATGGAAGAGCTGACGGCACTGATACACAAAAATGGGTGCTTTGATATATTGACGTTGGAGATACAACCTCAGAGGGCCCAGCCCTTTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

339

Amino Acids

37.72

Weight (kDa)

6.0

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 97 - 329 5.4e-75 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 817
AccB1I GGYRCC 1 cut(s) 171
AccI GTMKAC 1 cut(s) 459
AciI CCGC 1 cut(s) 600
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 887
AcuI CTGAAG 1 cut(s) 448
AcyI GRCGYC 1 cut(s) 814
AfiI CCNNNNNNNGG 1 cut(s) 925
AjnI CCWGG 1 cut(s) 808
AloI GAACNNNNNNTCC 2 cut(s) 780, 812
AluBI AGCT 4 cut(s) 254, 640, 775, 934
AluI AGCT 4 cut(s) 254, 640, 775, 934
Alw21I GWGCWC 2 cut(s) 763, 769
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 762
AoxI GGCC 3 cut(s) 427, 576, 999
ApaI GGGCCC 1 cut(s) 1003
ApeKI GCWGC 3 cut(s) 251, 533, 536
ApoI RAATTY 1 cut(s) 887
AseI ATTAAT 1 cut(s) 791
AspS9I GGNCC 5 cut(s) 196, 328, 359, 999, 1000
AsuC2I CCSGG 1 cut(s) 867
AsuHPI GGTGA 2 cut(s) 44, 687
AvaI CYCGRG 1 cut(s) 762
AvaII GGWCC 3 cut(s) 196, 328, 359
BaeGI GKGCMC 1 cut(s) 1003
BanI GGYRCC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 1003
BarI GAAGNNNNNNTAC 2 cut(s) 47, 79
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 2 cut(s) 763, 769
BbvI GCAGC 3 cut(s) 263, 520, 548
BccI CCATC 2 cut(s) 395, 928
BceAI ACGGC 1 cut(s) 954
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BciT130I CCWGG 1 cut(s) 810
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 867
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 4 cut(s) 5, 84, 275, 344
BfmI CTRYAG 1 cut(s) 534
BglI GCCNNNNNGGC 1 cut(s) 435
BisI GCNGC 3 cut(s) 252, 534, 537
BlsI GCNGC 3 cut(s) 253, 535, 538
Bme1390I CCNGG 2 cut(s) 810, 867
Bme18I GGWCC 3 cut(s) 196, 328, 359
BmeT110I CYCGRG 1 cut(s) 762
BmgT120I GGNCC 5 cut(s) 196, 328, 359, 999, 1000
BmiI GGNNCC 4 cut(s) 173, 271, 807, 1001
BmrFI CCNGG 2 cut(s) 810, 867
BmsI GCATC 2 cut(s) 25, 174
BpiI GAAGAC 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 696, 768
BpuMI CCSGG 1 cut(s) 867
BsaHI GRCGYC 1 cut(s) 814
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 4 cut(s) 324, 573, 735, 924
Bsc4I CCNNNNNNNGG 1 cut(s) 925
Bse1I ACTGG 1 cut(s) 613
Bse3DI GCAATG 2 cut(s) 372, 913
BseBI CCWGG 1 cut(s) 810
BseDI CCNNGG 4 cut(s) 324, 573, 735, 924
BseGI GGATG 1 cut(s) 920
BseLI CCNNNNNNNGG 1 cut(s) 925
BseMI GCAATG 2 cut(s) 372, 913
BseMII CTCAG 3 cut(s) 216, 866, 1007
BseNI ACTGG 1 cut(s) 613
BseSI GKGCMC 1 cut(s) 1003
BseXI GCAGC 3 cut(s) 263, 520, 548
BseYI CCCAGC 1 cut(s) 1002
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 3 cut(s) 429, 578, 1001
BshNI GGYRCC 1 cut(s) 171
BsiHKAI GWGCWC 2 cut(s) 763, 769
BsiHKCI CYCGRG 1 cut(s) 762
BsiSI CCGG 1 cut(s) 867
BslI CCNNNNNNNGG 1 cut(s) 925
BsmAI GTCTC 1 cut(s) 377
BsmI GAATGC 3 cut(s) 38, 741, 841
BsnI GGCC 3 cut(s) 429, 578, 1001
Bso31I GGTCTC 1 cut(s) 377
BsoBI CYCGRG 1 cut(s) 762
Bsp120I GGGCCC 1 cut(s) 999
Bsp1286I GDGCHC 3 cut(s) 763, 769, 1003
Bsp143I GATC 3 cut(s) 76, 190, 340
Bsp19I CCATGG 1 cut(s) 924
BspACI CCGC 1 cut(s) 600
BspANI GGCC 3 cut(s) 429, 578, 1001
BspCNI CTCAG 3 cut(s) 217, 867, 1006
BspLI GGNNCC 4 cut(s) 173, 271, 807, 1001
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 1 cut(s) 198
BspQI GCTCTTC 1 cut(s) 924
BspT107I GGYRCC 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 377
BsrDI GCAATG 2 cut(s) 372, 913
BsrI ACTGG 1 cut(s) 613
BssECI CCNNGG 4 cut(s) 324, 573, 735, 924
BssMI GATC 3 cut(s) 76, 190, 340
BssNAI GTATAC 1 cut(s) 460
BssNI GRCGYC 1 cut(s) 814
BssT1I CCWWGG 3 cut(s) 573, 735, 924
Bst1107I GTATAC 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 810
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 924
BstACI GRCGYC 1 cut(s) 814
BstDEI CTNAG 4 cut(s) 225, 624, 875, 993
BstDSI CCRYGG 2 cut(s) 324, 924
BstF5I GGATG 1 cut(s) 920
BstKTI GATC 3 cut(s) 79, 193, 343
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 3 cut(s) 76, 190, 340
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstNI CCWGG 1 cut(s) 810
BstSCI CCNGG 2 cut(s) 808, 865
BstSFI CTRYAG 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 1003
BstV1I GCAGC 3 cut(s) 263, 520, 548
BstV2I GAAGAC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZ17I GTATAC 1 cut(s) 460
BsuRI GGCC 3 cut(s) 429, 578, 1001
BtgI CCRYGG 2 cut(s) 324, 924
BtsCI GGATG 1 cut(s) 920
BtsIMutI CAGTG 4 cut(s) 472, 620, 752, 941
CaiI CAGNNNCTG 1 cut(s) 193
Cfr13I GGNCC 5 cut(s) 196, 328, 359, 999, 1000
CpoI CGGWCCG 1 cut(s) 328
CspI CGGWCCG 1 cut(s) 328
CviAII CATG 2 cut(s) 557, 925
DdeI CTNAG 4 cut(s) 225, 624, 875, 993
DpnI GATC 3 cut(s) 78, 192, 342
DpnII GATC 3 cut(s) 76, 190, 340
Eam1104I CTCTTC 1 cut(s) 924
EarI CTCTTC 1 cut(s) 924
Eco130I CCWWGG 3 cut(s) 573, 735, 924
Eco147I AGGCCT 1 cut(s) 578
Eco24I GRGCYC 1 cut(s) 1003
Eco31I GGTCTC 1 cut(s) 377
Eco32I GATATC 1 cut(s) 402
Eco47I GGWCC 3 cut(s) 196, 328, 359
Eco57I CTGAAG 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 762
EcoO109I RGGNCCY 1 cut(s) 999
EcoRII CCWGG 1 cut(s) 808
EcoRV GATATC 1 cut(s) 402
EcoT14I CCWWGG 3 cut(s) 573, 735, 924
EcoT22I ATGCAT 2 cut(s) 40, 915
EcoT38I GRGCYC 1 cut(s) 1003
ErhI CCWWGG 3 cut(s) 573, 735, 924
FaeI CATG 2 cut(s) 560, 928
FalI AAGNNNNNCTT 6 cut(s) 126, 158, 512, 544, 627, 659
FatI CATG 2 cut(s) 556, 924
FauNDI CATATG 2 cut(s) 604, 718
FbaI TGATCA 1 cut(s) 76
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 3 cut(s) 252, 534, 537
FokI GGATG 1 cut(s) 907
FriOI GRGCYC 1 cut(s) 1003
Fsp4HI GCNGC 3 cut(s) 252, 534, 537
FspBI CTAG 4 cut(s) 5, 84, 275, 344
GluI GCNGC 3 cut(s) 252, 534, 537
GsaI CCCAGC 1 cut(s) 1006
HaeIII GGCC 3 cut(s) 429, 578, 1001
HapII CCGG 1 cut(s) 867
Hin1I GRCGYC 1 cut(s) 814
Hin1II CATG 2 cut(s) 560, 928
HinfI GANTC 3 cut(s) 647, 829, 893
HpaII CCGG 1 cut(s) 867
HphI GGTGA 2 cut(s) 44, 687
Hpy166II GTNNAC 5 cut(s) 199, 460, 595, 833, 872
Hpy188I TCNGA 4 cut(s) 213, 226, 332, 996
Hpy188III TCNNGA 5 cut(s) 84, 127, 382, 584, 818
Hpy8I GTNNAC 5 cut(s) 199, 460, 595, 833, 872
HpyAV CCTTC 2 cut(s) 41, 53
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 2 cut(s) 814, 977
HpyCH4V TGCA 9 cut(s) 38, 95, 187, 251, 281, 377, 536, 662, 913
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 4 cut(s) 225, 624, 875, 993
HpySE526I ACGT 2 cut(s) 814, 977
Hsp92I GRCGYC 1 cut(s) 814
Hsp92II CATG 2 cut(s) 560, 928
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 3 cut(s) 76, 190, 340
LguI GCTCTTC 1 cut(s) 924
Lsp1109I GCAGC 3 cut(s) 263, 520, 548
LweI GCATC 2 cut(s) 25, 174
MaeI CTAG 4 cut(s) 5, 84, 275, 344
MaeII ACGT 2 cut(s) 814, 977
MalI GATC 3 cut(s) 78, 192, 342
MboI GATC 3 cut(s) 76, 190, 340
MboII GAAGA 6 cut(s) 193, 309, 573, 746, 893, 941
MfeI CAATTG 1 cut(s) 176
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 3 cut(s) 763, 769, 1003
MluCI AATT 3 cut(s) 176, 333, 887
MlyI GAGTC 3 cut(s) 641, 838, 887
MmeI TCCRAC 3 cut(s) 191, 337, 960
MnlI CCTC 7 cut(s) 522, 589, 669, 792, 864, 990, 1002
Mph1103I ATGCAT 2 cut(s) 40, 915
MseI TTAA 3 cut(s) 666, 791, 900
MslI CAYNNNNRTG 1 cut(s) 954
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 1 cut(s) 867
MspR9I CCNGG 2 cut(s) 810, 867
MunI CAATTG 1 cut(s) 176
Mva1269I GAATGC 3 cut(s) 38, 741, 841
MvaI CCWGG 1 cut(s) 810
MwoI GCNNNNNNNGC 1 cut(s) 435
NciI CCSGG 1 cut(s) 867
NcoI CCATGG 1 cut(s) 924
NdeI CATATG 2 cut(s) 604, 718
NdeII GATC 3 cut(s) 76, 190, 340
NlaIII CATG 2 cut(s) 560, 928
NlaIV GGNNCC 4 cut(s) 173, 271, 807, 1001
NmeAIII GCCGAG 1 cut(s) 136
NsiI ATGCAT 2 cut(s) 40, 915
PaeR7I CTCGAG 1 cut(s) 762
PceI AGGCCT 1 cut(s) 578
PciSI GCTCTTC 1 cut(s) 924
PctI GAATGC 3 cut(s) 38, 741, 841
PfoI TCCNGGA 1 cut(s) 808
PkrI GCNGC 3 cut(s) 253, 535, 538
PleI GAGTC 3 cut(s) 641, 837, 887
PpsI GAGTC 3 cut(s) 641, 837, 887
PshBI ATTAAT 1 cut(s) 791
Psp6I CCWGG 1 cut(s) 808
PspFI CCCAGC 1 cut(s) 1002
PspGI CCWGG 1 cut(s) 808
PspN4I GGNNCC 4 cut(s) 173, 271, 807, 1001
PspOMI GGGCCC 1 cut(s) 999
PspPI GGNCC 5 cut(s) 196, 328, 359, 999, 1000
PspXI VCTCGAGB 1 cut(s) 762
PsrI GAACNNNNNNTAC 2 cut(s) 855, 887
PstI CTGCAG 1 cut(s) 538
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 954
Rsr2I CGGWCCG 1 cut(s) 328
RsrII CGGWCCG 1 cut(s) 328
SapI GCTCTTC 1 cut(s) 924
SaqAI TTAA 3 cut(s) 666, 791, 900
SatI GCNGC 3 cut(s) 252, 534, 537
Sau3AI GATC 3 cut(s) 76, 190, 340
Sau96I GGNCC 5 cut(s) 196, 328, 359, 999, 1000
SchI GAGTC 3 cut(s) 641, 838, 887
ScrFI CCNGG 2 cut(s) 810, 867
SduI GDGCHC 3 cut(s) 763, 769, 1003
SfaNI GCATC 2 cut(s) 25, 174
SfcI CTRYAG 1 cut(s) 534
Sfr274I CTCGAG 1 cut(s) 762
SinI GGWCC 3 cut(s) 196, 328, 359
SlaI CTCGAG 1 cut(s) 762
SmiMI CAYNNNNRTG 1 cut(s) 954
SmlI CTYRAG 3 cut(s) 711, 762, 783
SmoI CTYRAG 3 cut(s) 711, 762, 783
Sse9I AATT 3 cut(s) 176, 333, 887
SseBI AGGCCT 1 cut(s) 578
SsiI CCGC 1 cut(s) 600
SspMI CTAG 4 cut(s) 5, 84, 275, 344
StuI AGGCCT 1 cut(s) 578
StyD4I CCNGG 2 cut(s) 808, 865
StyI CCWWGG 3 cut(s) 573, 735, 924
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 2 cut(s) 817, 980
TaqI TCGA 4 cut(s) 291, 381, 650, 763
TasI AATT 3 cut(s) 176, 333, 887
Tru1I TTAA 3 cut(s) 666, 791, 900
Tru9I TTAA 3 cut(s) 666, 791, 900
TscAI CASTG 4 cut(s) 472, 620, 752, 948
TseI GCWGC 3 cut(s) 251, 533, 536
TspDTI ATGAA 5 cut(s) 72, 249, 361, 545, 717
TspGWI ACGGA 3 cut(s) 343, 837, 1002
TspRI CASTG 4 cut(s) 472, 620, 752, 948
VpaK11BI GGWCC 3 cut(s) 196, 328, 359
VspI ATTAAT 1 cut(s) 791
XapI RAATTY 1 cut(s) 887
XbaI TCTAGA 1 cut(s) 83
XhoI CTCGAG 1 cut(s) 762
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 4 cut(s) 5, 84, 275, 344
ZraI GACGTC 1 cut(s) 815
Zsp2I ATGCAT 2 cut(s) 40, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.