Rh7BG019500

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007511
Physical Location & Seq
Forward (+)
1248503 .. 1248847
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG019500.1

Sequence Viewer

Length: 345 bp
ATGGACATGTATGTACAGGGCTTATTAAGCGTAGATAAGATCGACTCTTTCAACATGCTAACTTATAGTCCATCAATGGACGAGGTACGTATGGTGTTACTGGAAAATGGGTGTTTTGAGATTGCAAGATTAGAAGAGCAACCTCCAATGTCCGTTCCTTTGAATACAACGCAAGAGCTTAGAGCTGGCATGGAGAGCATTATCACAAAACATTTCGGTTGCGACATTGTAGAGCCGCTTTTTGATCGATACTCGAAGAAAATTGCTGCACAGTCGCGTCCGCCCCTCACTGCTAAGGATGGCTTGGCTGTTGGATTATTCATCCTTCTCAAGCGCAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

114

Amino Acids

12.91

Weight (kDa)

5.81

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 112 5.6e-18 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 277
AciI CCGC 2 cut(s) 236, 281
AfaI GTAC 2 cut(s) 15, 87
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 2 cut(s) 52, 163
AluBI AGCT 2 cut(s) 178, 185
AluI AGCT 2 cut(s) 178, 185
ApeKI GCWGC 1 cut(s) 266
AspLEI GCGC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 253
BccI CCATC 2 cut(s) 79, 293
BisI GCNGC 2 cut(s) 236, 267
BlsI GCNGC 2 cut(s) 237, 268
Bpu10I CCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 247
BsaAI YACGTR 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 247
BseGI GGATG 2 cut(s) 304, 321
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 277
BshVI ATCGAT 1 cut(s) 247
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 2 cut(s) 39, 244
BspACI CCGC 2 cut(s) 236, 281
BspDI ATCGAT 1 cut(s) 247
BspFNI CGCG 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 129
BsrGI TGTACA 1 cut(s) 13
BsrI ACTGG 1 cut(s) 105
BssMI GATC 2 cut(s) 39, 244
Bst4CI ACNGT 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 179, 294
BstF5I GGATG 2 cut(s) 304, 321
BstFNI CGCG 1 cut(s) 277
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 2 cut(s) 42, 247
BstMBI GATC 2 cut(s) 39, 244
BstMWI GCNNNNNNNGC 2 cut(s) 27, 195
BstNSI RCATGY 2 cut(s) 10, 58
BstSNI TACGTA 1 cut(s) 89
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 253
Bsu15I ATCGAT 1 cut(s) 247
BsuTUI ATCGAT 1 cut(s) 247
BtsCI GGATG 2 cut(s) 304, 321
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 187
CfoI GCGC 1 cut(s) 336
ClaI ATCGAT 1 cut(s) 247
CseI GACGC 1 cut(s) 266
Csp6I GTAC 2 cut(s) 14, 86
CviAII CATG 3 cut(s) 7, 55, 190
CviJI RGCY 6 cut(s) 21, 178, 185, 235, 303, 308
CviKI_1 RGCY 6 cut(s) 21, 178, 185, 235, 303, 308
CviQI GTAC 2 cut(s) 14, 86
DdeI CTNAG 2 cut(s) 179, 294
DpnI GATC 2 cut(s) 41, 246
DpnII GATC 2 cut(s) 39, 244
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 270
Eco105I TACGTA 1 cut(s) 89
FaeI CATG 3 cut(s) 10, 58, 193
FaiI YATR 6 cut(s) 8, 12, 56, 66, 92, 191
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FatI CATG 3 cut(s) 6, 54, 189
Fnu4HI GCNGC 2 cut(s) 236, 267
FokI GGATG 2 cut(s) 308, 311
Fsp4HI GCNGC 2 cut(s) 236, 267
GlaI GCGC 1 cut(s) 335
GluI GCNGC 2 cut(s) 236, 267
HgaI GACGC 1 cut(s) 266
HhaI GCGC 1 cut(s) 336
Hin1II CATG 3 cut(s) 10, 58, 193
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 125, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 195
HpyF3I CTNAG 2 cut(s) 179, 294
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 3 cut(s) 10, 58, 193
HspAI GCGC 1 cut(s) 334
Kzo9I GATC 2 cut(s) 39, 244
LguI GCTCTTC 1 cut(s) 129
LpnPI CCDG 3 cut(s) 2, 86, 171
Lsp1109I GCAGC 1 cut(s) 253
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 96
MalI GATC 2 cut(s) 41, 246
MboI GATC 2 cut(s) 39, 244
MboII GAAGA 2 cut(s) 146, 268
MluCI AATT 1 cut(s) 261
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 3 cut(s) 76, 153, 296
MseI TTAA 1 cut(s) 26
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 27, 195
NdeII GATC 2 cut(s) 39, 244
NlaIII CATG 3 cut(s) 10, 58, 193
NspI RCATGY 2 cut(s) 10, 58
PciI ACATGT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 129
PkrI GCNGC 2 cut(s) 237, 268
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Ppu21I YACGTR 1 cut(s) 89
PscI ACATGT 1 cut(s) 6
RsaI GTAC 2 cut(s) 15, 87
RsaNI GTAC 2 cut(s) 14, 86
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 2 cut(s) 236, 267
Sau3AI GATC 2 cut(s) 39, 244
SchI GAGTC 1 cut(s) 38
SetI ASST 5 cut(s) 87, 91, 145, 180, 187
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SnaBI TACGTA 1 cut(s) 89
Sse9I AATT 1 cut(s) 261
SsiI CCGC 2 cut(s) 236, 281
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 1 cut(s) 91
TaqI TCGA 3 cut(s) 42, 247, 254
TasI AATT 1 cut(s) 261
TatI WGTACW 1 cut(s) 13
TauI GCSGC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 295
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 310
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 295
XceI RCATGY 2 cut(s) 10, 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.