Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007511

Physical Location & Seq

Genomic Coordinates Forward (+)

1523593 .. 1525795

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG020500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCAGAAGAAATGAGCCGTACAACATCTGAAGGATACCCAATGAAAGGTGGGGATGGCGAATACAGCTACTTCATCCACTCTTCTCGTCAGAGATGTGCAGCTGATACTTCAAAGGGAACCCTAGTTGCAAAAATAGTCGAAAACCTTGCCATCGAAAATCTGTCTTCAACCACGGTCCGAATTGCTGATCTAGGTTGTTCTGTTGGAACTAACACATTCATTGCAGTCGAGACCATCATTGAAGCGCAATACTTTGCTGCAGCAGTTCCGGGGAGTTTTCATGGAAGATTGTTTCCCAAGGTCTCTCTTGATATTGTTTACTCCGCATATGCTATCCAGTGGCTTTCTAAGACACCACAAGAGCTACTTGACTCGAACTCTCCTGCATTTAACAAGGGGAGGATTTTGTATGGCAAATCACCTGATGAAGTTGCTCAAGCATATGGGGTTCAGTATGCCAAGGACATTCAGTGTTTTCTTCGTGCTCGAGCACAAGAGCTTGTTCCTCAAGGATTAATGGTTCTCTTGGTTCCAGGACGTACGTCCAGACGGAATGAGTCCACAACAGCATTCTCCTACCCCTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

197

Amino Acids

21.59

Weight (kDa)

6.73

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	47 - 83	7.1e-09	SAM dependent carboxyl methyltransferase
Methyltransf_7	PF03492	84 - 189	1.2e-37	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007511)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g16990
malus_domestica	MD06G1224000.v1.1 MD06G1224100.v1.1
prunus_persica	Prupe.5G229100_v2.0.a1 Prupe.8G068600_v2.0.a1
pyrus_communis	pycom14g19440
rosa_chinensis	RchiOBHm_Chr7g0178881 RchiOBHm_Chr7g0178891 RchiOBHm_Chr7g0178921
rosa_laevigata	RLG00000005395 RLG00000005396 RLG00000005397
rosa_roxburghii	Rroxscaffold_3G00274580
rosa_rugosa	Rorug06G0420500
rosa_samantha	Rh7AG019900 Rh7BG019400 Rh7BG019500 Rh7CG020000 Rh7CG020100 Rh7CG020300 Rh7CG020500 Rh7DG019900 Rh7DG020000 Rh7DG020300
rosa_wichuraiana	Rw7G001610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	327
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	2 cut(s)	22, 544
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	114, 171, 245
AjnI	CCWGG	1 cut(s)	535
AloI	GAACNNNNNNTCC	2 cut(s)	507, 539
AluBI	AGCT	4 cut(s)	69, 104, 367, 502
AluI	AGCT	4 cut(s)	69, 104, 367, 502
Alw21I	GWGCWC	2 cut(s)	490, 496
Alw26I	GTCTC	2 cut(s)	227, 310
Ama87I	CYCGRG	1 cut(s)	489
ApeKI	GCWGC	3 cut(s)	101, 260, 263
AseI	ATTAAT	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	414
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	2 cut(s)	490, 496
BbvI	GCAGC	3 cut(s)	113, 247, 275
BccI	CCATC	3 cut(s)	50, 161, 245
BceAI	ACGGC	1 cut(s)	3
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	537
BciVI	GTATCC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	227, 310
BfaI	CTAG	2 cut(s)	125, 194
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	29
BisI	GCNGC	3 cut(s)	102, 261, 264
BlsI	GCNGC	3 cut(s)	103, 262, 265
Bme1390I	CCNGG	2 cut(s)	273, 537
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	121, 534
BmrFI	CCNGG	2 cut(s)	273, 537
BoxI	GACNNNNGTC	1 cut(s)	544
BpiI	GAAGAC	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	423, 495
BpuMI	CCSGG	1 cut(s)	273
BsaI	GGTCTC	2 cut(s)	227, 310
BsaJI	CCNNGG	4 cut(s)	174, 272, 300, 462
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	4 cut(s)	174, 272, 300, 462
BseGI	GGATG	2 cut(s)	61, 75
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	3 cut(s)	113, 247, 275
BsgI	GTGCAG	1 cut(s)	120
BsiHKAI	GWGCWC	2 cut(s)	490, 496
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	272
BsiWI	CGTACG	1 cut(s)	542
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	227, 310
BsmI	GAATGC	1 cut(s)	572
Bso31I	GGTCTC	2 cut(s)	227, 310
BsoBI	CYCGRG	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	490, 496
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	121, 534
BspMAI	CTGCAG	1 cut(s)	265
BspTNI	GGTCTC	2 cut(s)	227, 310
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	4 cut(s)	174, 272, 300, 462
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	300, 462
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	61, 75
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	2 cut(s)	227, 310
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	537
BstPAI	GACNNNNGTC	1 cut(s)	544
BstSCI	CCNGG	2 cut(s)	271, 535
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	113, 247, 275
BstV2I	GAAGAC	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	61, 75
BtsIMutI	CAGTG	2 cut(s)	347, 479
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	178
CpoI	CGGWCCG	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	21, 543
CspI	CGGWCCG	1 cut(s)	178
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	6 cut(s)	18, 69, 104, 346, 367, 502
CviKI_1	RGCY	6 cut(s)	18, 69, 104, 346, 367, 502
CviQI	GTAC	2 cut(s)	21, 543
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	300, 462
Eco31I	GGTCTC	2 cut(s)	227, 310
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	2 cut(s)	300, 462
ErhI	CCWWGG	2 cut(s)	300, 462
FaeI	CATG	1 cut(s)	287
FaiI	YATR	7 cut(s)	285, 331, 333, 414, 445, 447, 459
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	1 cut(s)	283
FauNDI	CATATG	2 cut(s)	331, 445
Fnu4HI	GCNGC	3 cut(s)	102, 261, 264
FokI	GGATG	2 cut(s)	62, 68
Fsp4HI	GCNGC	3 cut(s)	102, 261, 264
FspBI	CTAG	2 cut(s)	125, 194
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	3 cut(s)	102, 261, 264
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	2 cut(s)	374, 560
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	414
Hpy166II	GTNNAC	2 cut(s)	322, 564
Hpy188I	TCNGA	3 cut(s)	31, 93, 182
Hpy188III	TCNNGA	3 cut(s)	232, 311, 549
Hpy8I	GTNNAC	2 cut(s)	322, 564
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	2 cut(s)	541, 545
HpyCH4V	TGCA	5 cut(s)	101, 131, 227, 263, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	2 cut(s)	541, 545
Hsp92II	CATG	1 cut(s)	287
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	7 cut(s)	285, 353, 399, 438, 522, 549, 562
Lsp1109I	GCAGC	3 cut(s)	113, 247, 275
MaeI	CTAG	2 cut(s)	125, 194
MaeII	ACGT	2 cut(s)	541, 545
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	5 cut(s)	20, 75, 159, 300, 473
MhlI	GDGCHC	2 cut(s)	490, 496
MluCI	AATT	1 cut(s)	183
MlyI	GAGTC	2 cut(s)	368, 569
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	2 cut(s)	396, 519
MseI	TTAA	2 cut(s)	393, 518
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	2 cut(s)	273, 537
Mva1269I	GAATGC	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	273
NdeI	CATATG	2 cut(s)	331, 445
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	287
NlaIV	GGNNCC	2 cut(s)	121, 534
PaeR7I	CTCGAG	1 cut(s)	489
PctI	GAATGC	1 cut(s)	572
Pfl23II	CGTACG	1 cut(s)	542
PfoI	TCCNGGA	1 cut(s)	535
PkrI	GCNGC	3 cut(s)	103, 262, 265
PleI	GAGTC	2 cut(s)	368, 568
PpsI	GAGTC	2 cut(s)	368, 568
PshAI	GACNNNNGTC	1 cut(s)	544
PshBI	ATTAAT	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspLI	CGTACG	1 cut(s)	542
PspN4I	GGNNCC	2 cut(s)	121, 534
PspPI	GGNCC	1 cut(s)	178
PspXI	VCTCGAGB	1 cut(s)	489
PstI	CTGCAG	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	22, 544
RsaNI	GTAC	2 cut(s)	21, 543
Rsr2I	CGGWCCG	1 cut(s)	178
RsrII	CGGWCCG	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	393, 518
SatI	GCNGC	3 cut(s)	102, 261, 264
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	2 cut(s)	368, 569
ScrFI	CCNGG	2 cut(s)	273, 537
SduI	GDGCHC	2 cut(s)	490, 496
SfcI	CTRYAG	1 cut(s)	261
Sfr274I	CTCGAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	178
SlaI	CTCGAG	1 cut(s)	489
SmlI	CTYRAG	3 cut(s)	438, 489, 510
SmoI	CTYRAG	3 cut(s)	438, 489, 510
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	2 cut(s)	125, 194
StyD4I	CCNGG	2 cut(s)	271, 535
StyI	CCWWGG	2 cut(s)	300, 462
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	2 cut(s)	544, 548
TaqI	TCGA	5 cut(s)	141, 156, 231, 377, 490
TasI	AATT	1 cut(s)	183
Tru1I	TTAA	2 cut(s)	393, 518
Tru9I	TTAA	2 cut(s)	393, 518
TscAI	CASTG	2 cut(s)	347, 479
TseI	GCWGC	3 cut(s)	101, 260, 263
TspDTI	ATGAA	5 cut(s)	59, 64, 211, 272, 444
TspGWI	ACGGA	1 cut(s)	568
TspRI	CASTG	2 cut(s)	347, 479
VpaK11BI	GGWCC	1 cut(s)	178
VspI	ATTAAT	1 cut(s)	518
XhoI	CTCGAG	1 cut(s)	489
XspI	CTAG	2 cut(s)	125, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.