RLG00000000660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006912
Physical Location & Seq
Reverse (-)
3236895 .. 3238727
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000660

Sequence Viewer

Length: 510 bp
ATGGGTTTCCACAGATTTTCATACAACCGTTTCCATGTTGTGTTCTTTGGTGATGCAAGATCGTGGCGGCGCTGGTCCATTTTGAGGCCTCTGGTATTACTAGGAACCACAAGATTGGGCGAGGTCGAGCTCCACAATCGCATCCAAACGGAGGAGCGTAGAGTTAACGCGCGACTGGGCGAGGTCGAGCTCACGGACCTTGGCGTTGACGTGGTCGGCGAGGTTGCGGATCTTGGCGCTGACTTGGTCGGCGAGGTCGCAGGTGGAGGAGACGTTGGAGAGGACGTGGTCGGCATCGGACTTGACGATGTCGAGGACCTAGGAGGATTTCTGGAGATTGGAGAGGTCGCGGATCTTGGCGCTGACGTGGTCAGCGAGGTCGCAGGTGGAGGAGACGTTGGAGAGGACGTGGTCGGCGTCGAACTTCATGATGTCGAGGACATGGGAGGATTTCTGGAGATTGGAGATGTGCTTGTCAAGGTCGGAGCGTTGGGAGAGAGGAGGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.13

Weight (kDa)

4.29

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 251, 374
Acc36I ACCTGC 2 cut(s) 251, 374
AccII CGCG 3 cut(s) 170, 172, 350
AciI CCGC 3 cut(s) 67, 227, 350
AclWI GGATC 2 cut(s) 237, 360
AcyI GRCGYC 1 cut(s) 417
AfiI CCNNNNNNNGG 2 cut(s) 84, 151
AjiI CACGTC 4 cut(s) 211, 286, 367, 409
AluBI AGCT 2 cut(s) 130, 190
AluI AGCT 2 cut(s) 130, 190
Alw21I GWGCWC 2 cut(s) 132, 192
Alw26I GTCTC 2 cut(s) 264, 387
AlwI GGATC 2 cut(s) 237, 360
AoxI GGCC 1 cut(s) 86
AspA2I CCTAGG 1 cut(s) 319
AspLEI GCGC 4 cut(s) 72, 172, 239, 362
AspS9I GGNCC 3 cut(s) 75, 196, 316
AsuHPI GGTGA 1 cut(s) 62
AvaII GGWCC 3 cut(s) 75, 196, 316
AvrII CCTAGG 1 cut(s) 319
BanII GRGCYC 2 cut(s) 132, 192
Bbv12I GWGCWC 2 cut(s) 132, 192
BcoDI GTCTC 2 cut(s) 264, 387
BfaI CTAG 2 cut(s) 101, 320
BfoI RGCGCY 3 cut(s) 73, 240, 363
BfuAI ACCTGC 2 cut(s) 251, 374
BisI GCNGC 1 cut(s) 68
BlnI CCTAGG 1 cut(s) 319
BlsI GCNGC 1 cut(s) 69
Bme18I GGWCC 3 cut(s) 75, 196, 316
BmgBI CACGTC 4 cut(s) 211, 286, 367, 409
BmgT120I GGNCC 3 cut(s) 75, 196, 316
BmiI GGNNCC 1 cut(s) 106
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 3 cut(s) 43, 150, 303
BmuI ACTGGG 1 cut(s) 185
BpmI CTGGAG 2 cut(s) 353, 476
BsaHI GRCGYC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 199, 319
BsaXI ACNNNNNCTCC 8 cut(s) 258, 270, 288, 300, 381, 393, 411, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 151
Bse1I ACTGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 199, 319
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 84, 151
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 3 cut(s) 167, 282, 405
Bsh1236I CGCG 3 cut(s) 170, 172, 350
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 132, 192
BslI CCNNNNNNNGG 2 cut(s) 84, 151
BsmAI GTCTC 2 cut(s) 264, 387
BsmBI CGTCTC 2 cut(s) 264, 387
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 132, 192
Bsp143I GATC 3 cut(s) 59, 229, 352
BspACI CCGC 3 cut(s) 67, 227, 350
BspANI GGCC 1 cut(s) 88
BspFNI CGCG 3 cut(s) 170, 172, 350
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 106
BspMI ACCTGC 2 cut(s) 251, 374
BspPI GGATC 2 cut(s) 237, 360
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 199, 319
BssMI GATC 3 cut(s) 59, 229, 352
BssNI GRCGYC 1 cut(s) 417
BssT1I CCWWGG 2 cut(s) 199, 319
Bst4CI ACNGT 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 417
BstF5I GGATG 1 cut(s) 141
BstFNI CGCG 3 cut(s) 170, 172, 350
BstH2I RGCGCY 3 cut(s) 73, 240, 363
BstHHI GCGC 4 cut(s) 72, 172, 239, 362
BstKTI GATC 3 cut(s) 62, 232, 355
BstMAI GTCTC 2 cut(s) 264, 387
BstMBI GATC 3 cut(s) 59, 229, 352
BstUI CGCG 3 cut(s) 170, 172, 350
BstX2I RGATCY 2 cut(s) 229, 352
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 2 cut(s) 229, 352
BsuRI GGCC 1 cut(s) 88
BtrI CACGTC 4 cut(s) 211, 286, 367, 409
BtsCI GGATG 1 cut(s) 141
BveI ACCTGC 2 cut(s) 251, 374
CciI TCATGA 1 cut(s) 427
CfoI GCGC 4 cut(s) 72, 172, 239, 362
Cfr13I GGNCC 3 cut(s) 75, 196, 316
CseI GACGC 1 cut(s) 406
CviAII CATG 3 cut(s) 35, 428, 442
CviJI RGCY 3 cut(s) 88, 130, 190
CviKI_1 RGCY 3 cut(s) 88, 130, 190
DpnI GATC 3 cut(s) 61, 231, 354
DpnII GATC 3 cut(s) 59, 229, 352
Ecl136II GAGCTC 2 cut(s) 130, 190
Eco130I CCWWGG 2 cut(s) 199, 319
Eco147I AGGCCT 1 cut(s) 88
Eco24I GRGCYC 2 cut(s) 132, 192
Eco47I GGWCC 3 cut(s) 75, 196, 316
Eco53kI GAGCTC 2 cut(s) 130, 190
EcoICRI GAGCTC 2 cut(s) 130, 190
EcoO109I RGGNCCY 1 cut(s) 316
EcoT14I CCWWGG 2 cut(s) 199, 319
EcoT38I GRGCYC 2 cut(s) 132, 192
ErhI CCWWGG 2 cut(s) 199, 319
Esp3I CGTCTC 2 cut(s) 264, 387
FaeI CATG 3 cut(s) 38, 431, 445
FaiI YATR 4 cut(s) 22, 36, 429, 443
FatI CATG 3 cut(s) 34, 427, 441
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 2 cut(s) 132, 192
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 2 cut(s) 101, 320
GlaI GCGC 4 cut(s) 71, 171, 238, 361
GluI GCNGC 1 cut(s) 68
GsuI CTGGAG 2 cut(s) 353, 476
HaeII RGCGCY 3 cut(s) 73, 240, 363
HaeIII GGCC 1 cut(s) 88
HgaI GACGC 1 cut(s) 406
HhaI GCGC 4 cut(s) 72, 172, 239, 362
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 3 cut(s) 38, 431, 445
Hin6I GCGC 4 cut(s) 70, 170, 237, 360
HinP1I GCGC 4 cut(s) 70, 170, 237, 360
HincII GTYRAC 2 cut(s) 166, 208
HindII GTYRAC 2 cut(s) 166, 208
HpaI GTTAAC 1 cut(s) 166
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 166, 208
Hpy188I TCNGA 2 cut(s) 299, 485
Hpy188III TCNNGA 3 cut(s) 332, 428, 455
Hpy8I GTNNAC 2 cut(s) 166, 208
Hpy99I CGWCG 1 cut(s) 422
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 6 cut(s) 210, 273, 285, 366, 396, 408
HpyCH4V TGCA 1 cut(s) 56
HpySE526I ACGT 6 cut(s) 210, 273, 285, 366, 396, 408
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 3 cut(s) 38, 431, 445
HspAI GCGC 4 cut(s) 70, 170, 237, 360
KspAI GTTAAC 1 cut(s) 166
Kzo9I GATC 3 cut(s) 59, 229, 352
LmnI GCTCC 3 cut(s) 135, 154, 485
LpnPI CCDG 7 cut(s) 58, 77, 161, 246, 317, 369, 440
LweI GCATC 3 cut(s) 43, 150, 303
MaeI CTAG 2 cut(s) 101, 320
MaeII ACGT 6 cut(s) 210, 273, 285, 366, 396, 408
MalI GATC 3 cut(s) 61, 231, 354
MboI GATC 3 cut(s) 59, 229, 352
MflI RGATCY 2 cut(s) 229, 352
MhlI GDGCHC 2 cut(s) 132, 192
MmeI TCCRAC 3 cut(s) 256, 379, 463
MseI TTAA 1 cut(s) 165
MvnI CGCG 3 cut(s) 170, 172, 350
NdeII GATC 3 cut(s) 59, 229, 352
NlaIII CATG 3 cut(s) 38, 431, 445
NlaIV GGNNCC 1 cut(s) 106
PagI TCATGA 1 cut(s) 427
PaqCI CACCTGC 2 cut(s) 251, 374
PceI AGGCCT 1 cut(s) 88
PcsI WCGNNNNNNNCGW 4 cut(s) 216, 303, 372, 414
PflFI GACNNNGTC 6 cut(s) 212, 245, 287, 308, 368, 410
PkrI GCNGC 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 316
Psp124BI GAGCTC 2 cut(s) 132, 192
Psp5II RGGWCCY 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 3 cut(s) 75, 196, 316
PspPPI RGGWCCY 1 cut(s) 316
PsuI RGATCY 2 cut(s) 229, 352
PsyI GACNNNGTC 6 cut(s) 212, 245, 287, 308, 368, 410
SacI GAGCTC 2 cut(s) 132, 192
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 3 cut(s) 59, 229, 352
Sau96I GGNCC 3 cut(s) 75, 196, 316
SduI GDGCHC 2 cut(s) 132, 192
SfaNI GCATC 3 cut(s) 43, 150, 303
SinI GGWCC 3 cut(s) 75, 196, 316
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 3 cut(s) 67, 227, 350
SspMI CTAG 2 cut(s) 101, 320
SstI GAGCTC 2 cut(s) 132, 192
StuI AGGCCT 1 cut(s) 88
StyI CCWWGG 2 cut(s) 199, 319
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 6 cut(s) 213, 276, 288, 369, 399, 411
TaqI TCGA 5 cut(s) 126, 186, 312, 420, 435
TauI GCSGC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TspDTI ATGAA 2 cut(s) 9, 416
TspGWI ACGGA 2 cut(s) 164, 209
Tth111I GACNNNGTC 6 cut(s) 212, 245, 287, 308, 368, 410
VpaK11BI GGWCC 3 cut(s) 75, 196, 316
XmaJI CCTAGG 1 cut(s) 319
XspI CTAG 2 cut(s) 101, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.