Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024469.1

Orthogroup ID

OG0006912

Physical Location & Seq

Genomic Coordinates Forward (+)

9831 .. 10364

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024469.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgagactgggcgaggtcgagctcgcgggccttggagctgacatggtcggcgaggttgcggatcttggcgctgacgtggtcgacgaggtcggaggtggaggagacgttggagaggacgtgatcggcgttggacttgacgatgtcgaggacctgggaggatttctggtgattggagaggtcgcggatcttggagctgacgtggtcggcgaggtcgcaggtggaggagacgttggagaggacgtggtcggcgttggacttgacgatatcgaggacctgggaggatttctggagattggagaggtgtttgtcgaggtcggagcgctgggtgagaggaggtggtcgaggttgagatccagggcgagccgtggactgcggcggaggaggagagtcgtcgctgactgggatggtgaggaggaccagcgccgatgcgagtatgcagggctccggcgacgggcacgagaagcagaggagagagagagagagaaagagagtatgagggcaatactgtcaaagactattggattgagtaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

18.87

Weight (kDa)

4.41

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07420
rosa_laevigata	RLG00000000660 RLG00000002907 RLG00000007972 RLG00000009435
rosa_multiflora	Rmu_sc0005072.1_g000009 Rmu_sc0024469.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121510
rosa_rugosa	Rorug05G0102500 Rorug07G0132700
rosa_samantha	Rh1AG344800 Rh1BG170200 Rh1CG262000 Rh2AG051400 Rh2BG245700 Rh2DG331100 Rh3BG137600 Rh3DG139000 Rh3DG303000 Rh5AG377200 Rh5BG534400 Rh6AG001100 Rh7AG343400 Rh7BG401400 Rh7CG360900 Rh7CG470900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	206
Acc36I	ACCTGC	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	2 cut(s)	26, 182
AciI	CCGC	5 cut(s)	26, 59, 182, 373, 376
AclWI	GGATC	3 cut(s)	69, 192, 345
AfeI	AGCGCT	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	451
AjiI	CACGTC	4 cut(s)	76, 118, 199, 241
AjnI	CCWGG	3 cut(s)	150, 273, 353
AluBI	AGCT	3 cut(s)	22, 38, 194
AluI	AGCT	3 cut(s)	22, 38, 194
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	96, 219
AlwI	GGATC	3 cut(s)	69, 192, 345
Aor51HI	AGCGCT	1 cut(s)	321
AoxI	GGCC	1 cut(s)	28
AspLEI	GCGC	3 cut(s)	71, 322, 423
AspS9I	GGNCC	4 cut(s)	28, 148, 271, 415
AsuHPI	GGTGA	3 cut(s)	178, 338, 419
AvaII	GGWCC	3 cut(s)	148, 271, 415
BaeGI	GKGCMC	1 cut(s)	457
BanII	GRGCYC	2 cut(s)	24, 444
BauI	CACGAG	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	24
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	3 cut(s)	152, 275, 355
BcoDI	GTCTC	2 cut(s)	96, 219
BfoI	RGCGCY	3 cut(s)	72, 323, 424
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	375
Bme1390I	CCNGG	3 cut(s)	152, 275, 355
Bme18I	GGWCC	3 cut(s)	148, 271, 415
BmgBI	CACGTC	4 cut(s)	76, 118, 199, 241
BmgT120I	GGNCC	4 cut(s)	28, 148, 271, 415
BmiI	GGNNCC	1 cut(s)	443
BmrFI	CCNGG	3 cut(s)	152, 275, 355
BmrI	ACTGGG	2 cut(s)	17, 409
BmsI	GCATC	1 cut(s)	416
BmuI	ACTGGG	2 cut(s)	17, 409
BpmI	CTGGAG	1 cut(s)	308
BsaJI	CCNNGG	5 cut(s)	31, 151, 274, 354, 364
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	2 cut(s)	12, 404
BseBI	CCWGG	3 cut(s)	152, 275, 355
BseDI	CCNNGG	5 cut(s)	31, 151, 274, 354, 364
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseNI	ACTGG	2 cut(s)	12, 404
BseRI	GAGGAG	7 cut(s)	114, 237, 346, 394, 397, 425, 482
BseSI	GKGCMC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	322
Bsh1236I	CGCG	2 cut(s)	26, 182
BshFI	GGCC	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	2 cut(s)	96, 219
BsmBI	CGTCTC	2 cut(s)	96, 219
BsnI	GGCC	1 cut(s)	30
Bsp1286I	GDGCHC	3 cut(s)	24, 444, 457
Bsp143I	GATC	4 cut(s)	61, 120, 184, 350
BspACI	CCGC	5 cut(s)	26, 59, 182, 373, 376
BspANI	GGCC	1 cut(s)	30
BspFNI	CGCG	2 cut(s)	26, 182
BspLI	GGNNCC	1 cut(s)	443
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	3 cut(s)	69, 192, 345
BsrI	ACTGG	2 cut(s)	12, 404
BssECI	CCNNGG	5 cut(s)	31, 151, 274, 354, 364
BssMI	GATC	4 cut(s)	61, 120, 184, 350
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	3 cut(s)	152, 275, 355
Bst4CI	ACNGT	1 cut(s)	507
BstC8I	GCNNGC	3 cut(s)	24, 28, 361
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	2 cut(s)	26, 182
BstH2I	RGCGCY	3 cut(s)	72, 323, 424
BstHHI	GCGC	3 cut(s)	71, 322, 423
BstKTI	GATC	4 cut(s)	64, 123, 187, 353
BstMAI	GTCTC	2 cut(s)	96, 219
BstMBI	GATC	4 cut(s)	61, 120, 184, 350
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	3 cut(s)	152, 275, 355
BstSCI	CCNGG	3 cut(s)	150, 273, 353
BstSLI	GKGCMC	1 cut(s)	457
BstUI	CGCG	2 cut(s)	26, 182
BstX2I	RGATCY	3 cut(s)	61, 184, 350
BstYI	RGATCY	3 cut(s)	61, 184, 350
BsuRI	GGCC	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	364
BtrI	CACGTC	4 cut(s)	76, 118, 199, 241
BtsCI	GGATG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	3 cut(s)	24, 28, 361
CfoI	GCGC	3 cut(s)	71, 322, 423
Cfr13I	GGNCC	4 cut(s)	28, 148, 271, 415
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	6 cut(s)	22, 30, 38, 194, 363, 442
CviKI_1	RGCY	6 cut(s)	22, 30, 38, 194, 363, 442
DpnI	GATC	4 cut(s)	63, 122, 186, 352
DpnII	GATC	4 cut(s)	61, 120, 184, 350
EciI	GGCGGA	1 cut(s)	391
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	2 cut(s)	24, 444
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	3 cut(s)	148, 271, 415
Eco47III	AGCGCT	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	22
EcoO109I	RGGNCCY	2 cut(s)	148, 271
EcoRII	CCWGG	3 cut(s)	150, 273, 353
EcoRV	GATATC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	2 cut(s)	24, 444
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	2 cut(s)	96, 219
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 435, 494
FatI	CATG	1 cut(s)	42
FauI	CCCGC	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	374
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	2 cut(s)	24, 444
Fsp4HI	GCNGC	1 cut(s)	374
GlaI	GCGC	3 cut(s)	70, 321, 422
GluI	GCNGC	1 cut(s)	374
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	3 cut(s)	72, 323, 424
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	1 cut(s)	445
HhaI	GCGC	3 cut(s)	71, 322, 423
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	3 cut(s)	69, 320, 421
HinP1I	GCGC	3 cut(s)	69, 320, 421
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	387
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	3 cut(s)	178, 338, 419
Hpy166II	GTNNAC	2 cut(s)	82, 368
Hpy188I	TCNGA	2 cut(s)	92, 317
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	2 cut(s)	82, 368
Hpy99I	CGWCG	3 cut(s)	86, 395, 453
HpyCH4III	ACNGT	1 cut(s)	507
HpyCH4IV	ACGT	6 cut(s)	75, 105, 117, 198, 228, 240
HpyCH4V	TGCA	1 cut(s)	437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpySE526I	ACGT	6 cut(s)	75, 105, 117, 198, 228, 240
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	3 cut(s)	69, 320, 421
Kzo9I	GATC	4 cut(s)	61, 120, 184, 350
LmnI	GCTCC	4 cut(s)	35, 191, 317, 447
LweI	GCATC	1 cut(s)	416
MaeII	ACGT	6 cut(s)	75, 105, 117, 198, 228, 240
MalI	GATC	4 cut(s)	63, 122, 186, 352
MboI	GATC	4 cut(s)	61, 120, 184, 350
MflI	RGATCY	3 cut(s)	61, 184, 350
MhlI	GDGCHC	3 cut(s)	24, 444, 457
MlyI	GAGTC	1 cut(s)	396
MmeI	TCCRAC	6 cut(s)	70, 88, 109, 211, 232, 295
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	3 cut(s)	152, 275, 355
MvaI	CCWGG	3 cut(s)	152, 275, 355
MvnI	CGCG	2 cut(s)	26, 182
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	4 cut(s)	61, 120, 184, 350
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	4 cut(s)	81, 123, 204, 246
PflFI	GACNNNGTC	6 cut(s)	44, 77, 86, 140, 200, 242
PkrI	GCNGC	1 cut(s)	375
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PpuMI	RGGWCCY	2 cut(s)	148, 271
Psp124BI	GAGCTC	1 cut(s)	24
Psp5II	RGGWCCY	2 cut(s)	148, 271
Psp6I	CCWGG	3 cut(s)	150, 273, 353
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	3 cut(s)	150, 273, 353
PspN4I	GGNNCC	1 cut(s)	443
PspPI	GGNCC	4 cut(s)	28, 148, 271, 415
PspPPI	RGGWCCY	2 cut(s)	148, 271
PsuI	RGATCY	3 cut(s)	61, 184, 350
PsyI	GACNNNGTC	6 cut(s)	44, 77, 86, 140, 200, 242
SacI	GAGCTC	1 cut(s)	24
SalI	GTCGAC	1 cut(s)	80
SatI	GCNGC	1 cut(s)	374
Sau3AI	GATC	4 cut(s)	61, 120, 184, 350
Sau96I	GGNCC	4 cut(s)	28, 148, 271, 415
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	3 cut(s)	152, 275, 355
SduI	GDGCHC	3 cut(s)	24, 444, 457
SfaNI	GCATC	1 cut(s)	416
SinI	GGWCC	3 cut(s)	148, 271, 415
SsiI	CCGC	5 cut(s)	26, 59, 182, 373, 376
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	3 cut(s)	150, 273, 353
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	507
TaiI	ACGT	6 cut(s)	78, 108, 120, 201, 231, 243
TaqI	TCGA	6 cut(s)	18, 81, 144, 267, 309, 341
TauI	GCSGC	1 cut(s)	376
Tth111I	GACNNNGTC	6 cut(s)	44, 77, 86, 140, 200, 242
VpaK11BI	GGWCC	3 cut(s)	148, 271, 415
XmiI	GTMKAC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.