RLG00000007972

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0006912
Physical Location & Seq
Reverse (-)
23673817 .. 23676952
3136 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007972

Sequence Viewer

Length: 375 bp
ATGGTCGGCGAGGTCACAGGTGGAGGAGACGTTGGAGAGGACGTGATCGGCGTCGAACTTGATGATGTCGAGGACCTGGGAGGATTTCTGGAGATTGGAGAGGTGCTTGTCGAGGTCAGAGCGCTGGGAGAGGAGGTGGTCGAGGTTGAGATCCAGGGCGCGTTGACCACCGACACCGATGCTGTGGCAGTGTCCAGAGTTGGACGAGGCGACGCTGAACAAGAATCGGAGATCTCTTCCTCGAAGCCTTTCATGAATGAGTCTGTTGCCGGAACGGGATCGGAATCGTCGAGGAAGACCAGTAGGTCTTCTCTAAGTCACTTAACTTCGACTGAGTCTCTGAGTCGAACTCGTATCTCCCAACTTGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

12.89

Weight (kDa)

4.15

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
AccII CGCG 1 cut(s) 161
AclWI GGATC 2 cut(s) 145, 286
AcyI GRCGYC 1 cut(s) 51
AfeI AGCGCT 1 cut(s) 123
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 2 cut(s) 75, 153
Alw26I GTCTC 2 cut(s) 21, 342
AlwI GGATC 2 cut(s) 145, 286
Aor51HI AGCGCT 1 cut(s) 123
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 2 cut(s) 124, 161
AspS9I GGNCC 1 cut(s) 73
AvaII GGWCC 1 cut(s) 73
BbsI GAAGAC 2 cut(s) 300, 302
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 2 cut(s) 77, 155
BcoDI GTCTC 2 cut(s) 21, 342
BfoI RGCGCY 1 cut(s) 125
BglII AGATCT 1 cut(s) 231
Bme1390I CCNGG 2 cut(s) 77, 155
Bme18I GGWCC 1 cut(s) 73
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 2 cut(s) 77, 155
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 2 cut(s) 300, 302
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BpmI CTGGAG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 283
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 76, 154
BsaXI ACNNNNNCTCC 6 cut(s) 15, 27, 45, 57, 120, 150
Bse1I ACTGG 1 cut(s) 300
Bse8I GATNNNNATC 1 cut(s) 283
BseBI CCWGG 2 cut(s) 77, 155
BseDI CCNNGG 2 cut(s) 76, 154
BseJI GATNNNNATC 1 cut(s) 283
BseMII CTCAG 2 cut(s) 324, 332
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 2 cut(s) 39, 146
BseYI CCCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 161
BsiSI CCGG 1 cut(s) 270
BsmAI GTCTC 2 cut(s) 21, 342
BsmBI CGTCTC 1 cut(s) 21
Bsp143I GATC 4 cut(s) 45, 150, 231, 278
BspCNI CTCAG 2 cut(s) 325, 333
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 1 cut(s) 252
BspPI GGATC 2 cut(s) 145, 286
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 2 cut(s) 76, 154
BssMI GATC 4 cut(s) 45, 150, 231, 278
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 77, 155
Bst6I CTCTTC 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 51
BstDEI CTNAG 3 cut(s) 314, 333, 341
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 2 cut(s) 124, 161
BstKTI GATC 4 cut(s) 48, 153, 234, 281
BstMAI GTCTC 2 cut(s) 21, 342
BstMBI GATC 4 cut(s) 45, 150, 231, 278
BstNI CCWGG 2 cut(s) 77, 155
BstSCI CCNGG 2 cut(s) 75, 153
BstUI CGCG 1 cut(s) 161
BstV2I GAAGAC 2 cut(s) 300, 302
BstX2I RGATCY 2 cut(s) 150, 231
BstYI RGATCY 2 cut(s) 150, 231
BtrI CACGTC 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
CciI TCATGA 1 cut(s) 252
CfoI GCGC 2 cut(s) 124, 161
Cfr13I GGNCC 1 cut(s) 73
CseI GACGC 2 cut(s) 40, 221
CviAII CATG 1 cut(s) 253
CviJI RGCY 1 cut(s) 247
CviKI_1 RGCY 1 cut(s) 247
DdeI CTNAG 3 cut(s) 314, 333, 341
DpnI GATC 4 cut(s) 47, 152, 233, 280
DpnII GATC 4 cut(s) 45, 150, 231, 278
DrdI GACNNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 73
Eco47III AGCGCT 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 75, 153
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 1 cut(s) 256
FaiI YATR 1 cut(s) 254
FatI CATG 1 cut(s) 252
GlaI GCGC 2 cut(s) 123, 160
GsaI CCCAGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 125
HapII CCGG 1 cut(s) 270
HgaI GACGC 2 cut(s) 40, 221
HhaI GCGC 2 cut(s) 124, 161
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 2 cut(s) 122, 159
HinP1I GCGC 2 cut(s) 122, 159
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 5 cut(s) 224, 260, 284, 335, 343
HpaII CCGG 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 4 cut(s) 119, 229, 283, 342
Hpy188III TCNNGA 4 cut(s) 89, 195, 253, 372
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 3 cut(s) 56, 215, 292
HpyCH4IV ACGT 2 cut(s) 30, 42
HpyF3I CTNAG 3 cut(s) 314, 333, 341
HpySE526I ACGT 2 cut(s) 30, 42
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 2 cut(s) 122, 159
Kzo9I GATC 4 cut(s) 45, 150, 231, 278
LweI GCATC 1 cut(s) 169
MaeII ACGT 2 cut(s) 30, 42
MaeIII GTNAC 2 cut(s) 13, 317
MalI GATC 4 cut(s) 47, 152, 233, 280
MboI GATC 4 cut(s) 45, 150, 231, 278
MboII GAAGA 3 cut(s) 228, 300, 307
MflI RGATCY 2 cut(s) 150, 231
MlyI GAGTC 3 cut(s) 269, 344, 352
MmeI TCCRAC 2 cut(s) 13, 181
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 1 cut(s) 323
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 2 cut(s) 77, 155
MvaI CCWGG 2 cut(s) 77, 155
MvnI CGCG 1 cut(s) 161
NdeII GATC 4 cut(s) 45, 150, 231, 278
NlaIII CATG 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 13, 317
PagI TCATGA 1 cut(s) 252
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 287
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 2 cut(s) 224, 284
PflFI GACNNNGTC 1 cut(s) 334
PleI GAGTC 3 cut(s) 268, 343, 351
PpsI GAGTC 3 cut(s) 268, 343, 351
PpuMI RGGWCCY 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 73
Psp6I CCWGG 2 cut(s) 75, 153
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 2 cut(s) 75, 153
PspPI GGNCC 1 cut(s) 73
PspPPI RGGWCCY 1 cut(s) 73
PsuI RGATCY 2 cut(s) 150, 231
PsyI GACNNNGTC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 323
Sau3AI GATC 4 cut(s) 45, 150, 231, 278
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 3 cut(s) 269, 344, 352
ScrFI CCNGG 2 cut(s) 77, 155
SfaNI GCATC 1 cut(s) 169
SinI GGWCC 1 cut(s) 73
StyD4I CCNGG 2 cut(s) 75, 153
TaiI ACGT 2 cut(s) 33, 45
TaqI TCGA 8 cut(s) 54, 69, 111, 141, 242, 290, 329, 346
TfiI GAWTC 2 cut(s) 224, 284
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 2 cut(s) 13, 317
Tsp45I GTSAC 2 cut(s) 13, 317
TspDTI ATGAA 2 cut(s) 241, 269
TspRI CASTG 1 cut(s) 195
Tth111I GACNNNGTC 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.