Rh5BG534400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006912
Physical Location & Seq
Reverse (-)
84261476 .. 84261742
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG534400.1

Sequence Viewer

Length: 267 bp
ATGGAGAAGCATGGAGTTGACGTGCGACAGGGCGAGGTCGAGCTCTCGAATCTTGGCGCTGACATGGTTAGCAAGGTCGCAGGTGGAGGAGAAGTTGGAAACAATGTGGTCGGCGTCGGACTTGACGACGTCGAGGACCTGGGAGAATTTCTGGAGATTGGAGAGGTGCTTGTCGAGGTCGCAGCGCTGGGAGAGGAGGTGGTCGAGGTTGAGATCCAGGGCGTGTTGGTAGGCTATGCACTTGTGGAGGAGGTGCTTCATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.11

Weight (kDa)

4.05

Isoelectric Point (pI)

14.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 71
AatII GACGTC 1 cut(s) 132
Acc36I ACCTGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 146
AcyI GRCGYC 2 cut(s) 114, 129
AfeI AGCGCT 1 cut(s) 186
AjiI CACGTC 1 cut(s) 22
AjnI CCWGG 2 cut(s) 138, 216
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw21I GWGCWC 1 cut(s) 45
AlwI GGATC 1 cut(s) 208
Aor51HI AGCGCT 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 146
AspLEI GCGC 2 cut(s) 59, 187
AspS9I GGNCC 1 cut(s) 136
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 194
BciT130I CCWGG 2 cut(s) 140, 218
BfoI RGCGCY 2 cut(s) 60, 188
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 140, 218
Bme18I GGWCC 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 140, 218
BpmI CTGGAG 1 cut(s) 173
BsaHI GRCGYC 2 cut(s) 114, 129
BsaJI CCNNGG 2 cut(s) 139, 217
BsaXI ACNNNNNCTCC 6 cut(s) 6, 36, 78, 108, 183, 213
BseBI CCWGG 2 cut(s) 140, 218
BseDI CCNNGG 2 cut(s) 139, 217
BseRI GAGGAG 3 cut(s) 102, 209, 263
BseXI GCAGC 1 cut(s) 194
BseYI CCCAGC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 139, 217
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 2 cut(s) 114, 129
Bst2UI CCWGG 2 cut(s) 140, 218
BstACI GRCGYC 2 cut(s) 114, 129
BstH2I RGCGCY 2 cut(s) 60, 188
BstHHI GCGC 2 cut(s) 59, 187
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstNI CCWGG 2 cut(s) 140, 218
BstSCI CCNGG 2 cut(s) 138, 216
BstV1I GCAGC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BtrI CACGTC 1 cut(s) 22
BveI ACCTGC 1 cut(s) 71
CfoI GCGC 2 cut(s) 59, 187
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 1 cut(s) 103
CviAII CATG 3 cut(s) 11, 64, 260
CviJI RGCY 2 cut(s) 43, 234
CviKI_1 RGCY 2 cut(s) 43, 234
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 136
Eco47III AGCGCT 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 138, 216
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 3 cut(s) 14, 67, 263
FaiI YATR 4 cut(s) 12, 65, 237, 261
FatI CATG 3 cut(s) 10, 63, 259
Fnu4HI GCNGC 1 cut(s) 183
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 183
GlaI GCGC 2 cut(s) 58, 186
GluI GCNGC 1 cut(s) 183
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 1 cut(s) 173
HaeII RGCGCY 2 cut(s) 60, 188
HgaI GACGC 1 cut(s) 103
HhaI GCGC 2 cut(s) 59, 187
Hin1I GRCGYC 2 cut(s) 114, 129
Hin1II CATG 3 cut(s) 14, 67, 263
Hin6I GCGC 2 cut(s) 57, 185
HinP1I GCGC 2 cut(s) 57, 185
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 46, 152
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 3 cut(s) 119, 131, 134
HpyCH4IV ACGT 2 cut(s) 21, 129
HpyCH4V TGCA 1 cut(s) 239
HpySE526I ACGT 2 cut(s) 21, 129
Hsp92I GRCGYC 2 cut(s) 114, 129
Hsp92II CATG 3 cut(s) 14, 67, 263
HspAI GCGC 2 cut(s) 57, 185
Kzo9I GATC 1 cut(s) 213
LpnPI CCDG 8 cut(s) 14, 66, 125, 137, 152, 173, 203, 230
Lsp1109I GCAGC 1 cut(s) 194
MaeII ACGT 2 cut(s) 21, 129
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 76, 97
MspR9I CCNGG 2 cut(s) 140, 218
MvaI CCWGG 2 cut(s) 140, 218
NdeII GATC 1 cut(s) 213
NlaIII CATG 3 cut(s) 14, 67, 263
PaqCI CACCTGC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 1 cut(s) 49
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 138, 216
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 2 cut(s) 138, 216
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 1 cut(s) 213
PsyI GACNNNGTC 1 cut(s) 128
SacI GAGCTC 1 cut(s) 45
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 140, 218
SduI GDGCHC 1 cut(s) 45
SinI GGWCC 1 cut(s) 136
Sse9I AATT 1 cut(s) 146
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 138, 216
TaiI ACGT 2 cut(s) 24, 132
TaqI TCGA 5 cut(s) 39, 47, 132, 174, 204
TasI AATT 1 cut(s) 146
TfiI GAWTC 1 cut(s) 49
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 248
Tth111I GACNNNGTC 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 146
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.