Rh5AG377200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006912
Physical Location & Seq
Forward (+)
64445771 .. 64450441
4671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG377200.1

Sequence Viewer

Length: 273 bp
ATGGGCACCCAGAGATTGCTCCACAATCGTGTCCAAACGGAGGAACGTGGAGTTGACGTGCGATTGGGTGAGGTCGAGCTCGCGGATCTTGGCGTTGACGTGGTCGGCGAGGTCGCAGGTGGAGGATATGTTGGAGAGGACGTGGTTGGTGTCGGACTTGACGATGTCGAGGACCTGGGAGGATTTCTGGAGATTGGAGAGGTGCTTGTCAAGGTTGGAGCGCTGGGAGAGGAGGTGGTCGAGGTTGAGATCCAGGGCGCTTTGACATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.41

Weight (kDa)

4.05

Isoelectric Point (pI)

14.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 107
Acc36I ACCTGC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 5
AccII CGCG 1 cut(s) 83
AciI CCGC 1 cut(s) 83
AclWI GGATC 2 cut(s) 93, 244
AfeI AGCGCT 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 40
AjiI CACGTC 3 cut(s) 58, 100, 142
AjnI CCWGG 2 cut(s) 174, 252
AleI CACNNNNGTG 1 cut(s) 27
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 81
AlwI GGATC 2 cut(s) 93, 244
Aor51HI AGCGCT 1 cut(s) 222
AspLEI GCGC 2 cut(s) 223, 260
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BciT130I CCWGG 2 cut(s) 176, 254
BfoI RGCGCY 2 cut(s) 224, 261
BfuAI ACCTGC 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 176, 254
Bme18I GGWCC 1 cut(s) 172
BmgBI CACGTC 3 cut(s) 58, 100, 142
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 2 cut(s) 176, 254
BpmI CTGGAG 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 175, 253
BsaXI ACNNNNNCTCC 8 cut(s) 42, 72, 114, 126, 144, 156, 219, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 40
BseBI CCWGG 2 cut(s) 176, 254
BseDI CCNNGG 2 cut(s) 175, 253
BseLI CCNNNNNNNGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 8
BseYI CCCAGC 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 83
BshNI GGYRCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 40
Bsp1286I GDGCHC 2 cut(s) 8, 81
Bsp143I GATC 2 cut(s) 85, 249
BspACI CCGC 1 cut(s) 83
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 2 cut(s) 93, 244
BspT107I GGYRCC 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 175, 253
BssMI GATC 2 cut(s) 85, 249
Bst2UI CCWGG 2 cut(s) 176, 254
BstC8I GCNNGC 1 cut(s) 81
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 2 cut(s) 224, 261
BstHHI GCGC 2 cut(s) 223, 260
BstKTI GATC 2 cut(s) 88, 252
BstMBI GATC 2 cut(s) 85, 249
BstNI CCWGG 2 cut(s) 176, 254
BstSCI CCNGG 2 cut(s) 174, 252
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 85, 249
BstYI RGATCY 2 cut(s) 85, 249
BtrI CACGTC 3 cut(s) 58, 100, 142
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 2 cut(s) 223, 260
Cfr13I GGNCC 1 cut(s) 172
CviJI RGCY 1 cut(s) 79
CviKI_1 RGCY 1 cut(s) 79
DpnI GATC 2 cut(s) 87, 251
DpnII GATC 2 cut(s) 85, 249
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 172
Eco47III AGCGCT 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 174, 252
EcoT38I GRGCYC 1 cut(s) 81
FaiI YATR 2 cut(s) 129, 268
FriOI GRGCYC 1 cut(s) 81
GlaI GCGC 2 cut(s) 222, 259
GsaI CCCAGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 2 cut(s) 224, 261
HhaI GCGC 2 cut(s) 223, 260
Hin6I GCGC 2 cut(s) 221, 258
HinP1I GCGC 2 cut(s) 221, 258
HincII GTYRAC 2 cut(s) 55, 97
HindII GTYRAC 2 cut(s) 55, 97
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 55, 97
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 55, 97
HpyCH4IV ACGT 4 cut(s) 46, 57, 99, 141
HpySE526I ACGT 4 cut(s) 46, 57, 99, 141
HspAI GCGC 2 cut(s) 221, 258
Kzo9I GATC 2 cut(s) 85, 249
LmnI GCTCC 2 cut(s) 24, 218
LpnPI CCDG 8 cut(s) 23, 102, 161, 173, 188, 209, 239, 266
MaeII ACGT 4 cut(s) 46, 57, 99, 141
MalI GATC 2 cut(s) 87, 251
MboI GATC 2 cut(s) 85, 249
MflI RGATCY 2 cut(s) 85, 249
MhlI GDGCHC 2 cut(s) 8, 81
MmeI TCCRAC 3 cut(s) 112, 133, 196
MseI TTAA 1 cut(s) 271
MslI CAYNNNNRTG 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 176, 254
MvaI CCWGG 2 cut(s) 176, 254
MvnI CGCG 1 cut(s) 83
NdeII GATC 2 cut(s) 85, 249
NlaIV GGNNCC 1 cut(s) 7
OliI CACNNNNGTG 1 cut(s) 27
PaqCI CACCTGC 1 cut(s) 107
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 159
PflFI GACNNNGTC 2 cut(s) 101, 164
PpuMI RGGWCCY 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 174, 252
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 2 cut(s) 174, 252
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 172
PspPPI RGGWCCY 1 cut(s) 172
PsuI RGATCY 2 cut(s) 85, 249
PsyI GACNNNGTC 2 cut(s) 101, 164
RseI CAYNNNNRTG 1 cut(s) 27
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 271
Sau3AI GATC 2 cut(s) 85, 249
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 2 cut(s) 176, 254
SduI GDGCHC 2 cut(s) 8, 81
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 27
SsiI CCGC 1 cut(s) 83
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 174, 252
TaiI ACGT 4 cut(s) 49, 60, 102, 144
TaqI TCGA 3 cut(s) 75, 168, 240
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TspGWI ACGGA 1 cut(s) 53
Tth111I GACNNNGTC 2 cut(s) 101, 164
VpaK11BI GGWCC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.