Rh3BG137600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006912
Physical Location & Seq
Forward (+)
11671306 .. 11671533
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG137600.1

Sequence Viewer

Length: 228 bp
ATGCTCCACAATCGCATCCAAACGGAGGAGCGTGGAGTTGATGCGGGACTGGGCGAGGTCGAGCTCGCGGACCTTGGTGCTGACTTGGTCGGCGAGGTCGCAGGTGGAGGAGACGTTGGAGAGGATGTGGTCGGCGTCGGACTTGACGATATCAAGGACCTGGGAGGATTTCTGGAGATTGGAGAGGTGCTTGTCGAGGTCGGAGTGCTGGGAGAGATGAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

7.63

Weight (kDa)

4.05

Isoelectric Point (pI)

9.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 92
AccII CGCG 1 cut(s) 68
AciI CCGC 2 cut(s) 44, 68
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 25
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 70, 157
AvaII GGWCC 2 cut(s) 70, 157
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 2 cut(s) 70, 157
BmgT120I GGNCC 2 cut(s) 70, 157
BmrFI CCNGG 1 cut(s) 161
BmrI ACTGGG 1 cut(s) 59
BmsI GCATC 2 cut(s) 24, 31
BmuI ACTGGG 1 cut(s) 59
BpmI CTGGAG 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 73, 160
BsaXI ACNNNNNCTCC 4 cut(s) 99, 111, 129, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 73, 160
BseGI GGATG 2 cut(s) 15, 130
BseLI CCNNNNNNNGG 1 cut(s) 25
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 2 cut(s) 41, 123
BseYI CCCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 66
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 105
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 66
BspACI CCGC 2 cut(s) 44, 68
BspFNI CGCG 1 cut(s) 68
BspMI ACCTGC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 73, 160
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 66
BstF5I GGATG 2 cut(s) 15, 130
BstFNI CGCG 1 cut(s) 68
BstMAI GTCTC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstUI CGCG 1 cut(s) 68
BtsCI GGATG 2 cut(s) 15, 130
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 70, 157
CseI GACGC 1 cut(s) 124
CviJI RGCY 1 cut(s) 64
CviKI_1 RGCY 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 70, 157
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 105
FaqI GGGAC 1 cut(s) 60
FauI CCCGC 1 cut(s) 37
FokI GGATG 2 cut(s) 2, 137
FriOI GRGCYC 1 cut(s) 66
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 194
HgaI GACGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 140, 203
Hpy188III TCNNGA 1 cut(s) 173
Hpy99I CGWCG 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 9, 28
LpnPI CCDG 6 cut(s) 35, 87, 146, 158, 173, 194
LweI GCATC 2 cut(s) 24, 31
MaeII ACGT 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 66
MmeI TCCRAC 3 cut(s) 97, 118, 181
MnlI CCTC 9 cut(s) 19, 49, 88, 101, 115, 158, 178, 190, 215
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MvnI CGCG 1 cut(s) 68
PaqCI CACCTGC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PflFI GACNNNGTC 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 159
PspPI GGNCC 2 cut(s) 70, 157
PspPPI RGGWCCY 1 cut(s) 157
PsyI GACNNNGTC 1 cut(s) 86
SacI GAGCTC 1 cut(s) 66
Sau96I GGNCC 2 cut(s) 70, 157
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 66
SfaNI GCATC 2 cut(s) 24, 31
SinI GGWCC 2 cut(s) 70, 157
SsiI CCGC 2 cut(s) 44, 68
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 73
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 60, 195
TspGWI ACGGA 1 cut(s) 38
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 70, 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.