RLG00000002907

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006912
Physical Location & Seq
Forward (+)
41593191 .. 41595412
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002907

Sequence Viewer

Length: 903 bp
ATGTGGTTAAGCTCTTCCCCAGACAACAGCTCATGTCGAATTGAGGATTCGGAGATAGGATCATTCTCTTCAATTTCCAACACAATATCCATAAAAAAAATTGGTCAAACACCCCACAAAATTGACCGCTTCGTTGCTATTCTCCACAATCACGTCCAATCAAACAAGCGTGGAGTTCATGGGCGATTGGGTGAGGTCGAGCTTGCGGACCTTGGTGCTGACGTGATCAGCGAGGTCGCATTGGAAGGTGACGTTGGAGAGGACTTGATCGGCGTCAGACTTGACGATCTCGAGGACCCAAGAGGATTTCTGGAGATTGGAAAGATGTTTGTTGAGATCGGAACATTGAGAGAGGATGTTGTCGAAGTTTTAGATCTCGTGCTCGCTGGTAGGCTATGCACTAGTGGAGGAGGAGCCCCAGATTTGGGTCCTTTAATCTCGGCGACAAACCTACCGGCGTCGGACTTGGTGGGCTACTGCTCAATGAGAACATCGCCGGCGACTCTGACGGAGTTTCAGACGAAGGAATGCTCAAGGAAGATGGGGTTTGCCGCAATTTCGGGAGTCTTTACAACTGGCGGAGTCCCAGATGGGCTTGACTTCGGAGCAGCGACGATCATTAGAGAGGAAGAAGACAACCAAAAACGAGACCCCAAACCCTCACCAAGCACCAAACCAACCCACCGTTCAAAACAATCAAAACCCAGTTCGTCATCTCCGACTCCTACTCCGAGTCCGCCACCATCAAAATCACCCCAAGATGTTCAAAGCTCGTTCACTTTCTGGTTCTACTTCACAATCATAGTCTCCATCATAATCTGTTCACAATCACAATCACAATCTTCATTTTATATAGCCAGGACAAGCTCGATCTCGGCGGAGACGGAGATCAATCTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

32.2

Weight (kDa)

4.97

Isoelectric Point (pI)

67.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 127, 206, 552, 579, 737, 878
AclWI GGATC 1 cut(s) 67
AcyI GRCGYC 2 cut(s) 273, 458
AfiI CCNNNNNNNGG 2 cut(s) 424, 425
AgsI TTSAA 3 cut(s) 72, 690, 767
AhlI ACTAGT 1 cut(s) 401
AjiI CACGTC 2 cut(s) 154, 223
AjnI CCWGG 1 cut(s) 857
AjuI GAANNNNNNNTTGG 4 cut(s) 237, 269, 670, 702
AluBI AGCT 5 cut(s) 12, 30, 202, 771, 867
AluI AGCT 5 cut(s) 12, 30, 202, 771, 867
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 3 cut(s) 642, 811, 875
AlwI GGATC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 608
AspS9I GGNCC 3 cut(s) 208, 295, 428
AsuHPI GGTGA 4 cut(s) 203, 260, 654, 744
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 3 cut(s) 208, 295, 428
BanII GRGCYC 1 cut(s) 418
BauI CACGAG 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 620
BccI CCATC 4 cut(s) 535, 584, 751, 818
BciT130I CCWGG 1 cut(s) 859
BclI TGATCA 1 cut(s) 225
BcoDI GTCTC 3 cut(s) 642, 811, 875
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 1 cut(s) 402
BglII AGATCT 1 cut(s) 373
BisI GCNGC 2 cut(s) 552, 609
BlsI GCNGC 2 cut(s) 553, 610
Bme1390I CCNGG 1 cut(s) 859
Bme18I GGWCC 3 cut(s) 208, 295, 428
BmeT110I CYCGRG 1 cut(s) 290
BmgBI CACGTC 2 cut(s) 154, 223
BmgT120I GGNCC 3 cut(s) 208, 295, 428
BmiI GGNNCC 3 cut(s) 297, 415, 429
BmrFI CCNGG 1 cut(s) 859
BmrI ACTGGG 1 cut(s) 699
BmuI ACTGGG 1 cut(s) 699
BpiI GAAGAC 1 cut(s) 639
BpmI CTGGAG 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 517
BsaHI GRCGYC 2 cut(s) 273, 458
BsaI GGTCTC 1 cut(s) 642
BsaJI CCNNGG 1 cut(s) 211
BsaXI ACNNNNNCTCC 2 cut(s) 712, 742
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 425
Bse118I RCCGGY 2 cut(s) 454, 496
Bse1I ACTGG 2 cut(s) 580, 705
BseBI CCWGG 1 cut(s) 859
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 424, 425
BseNI ACTGG 2 cut(s) 580, 705
BseRI GAGGAG 2 cut(s) 423, 426
BseXI GCAGC 1 cut(s) 620
BsiHKAI GWGCWC 1 cut(s) 384
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 2 cut(s) 455, 497
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 2 cut(s) 424, 425
BsmAI GTCTC 3 cut(s) 642, 811, 875
BsmBI CGTCTC 1 cut(s) 875
BsmFI GGGAC 1 cut(s) 569
BsmI GAATGC 1 cut(s) 533
Bso31I GGTCTC 1 cut(s) 642
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 2 cut(s) 384, 418
Bsp143I GATC 9 cut(s) 59, 225, 267, 286, 336, 373, 615, 870, 888
BspACI CCGC 6 cut(s) 127, 206, 552, 579, 737, 878
BspLI GGNNCC 3 cut(s) 297, 415, 429
BspPI GGATC 1 cut(s) 67
BspQI GCTCTTC 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 642
BsrFI RCCGGY 2 cut(s) 454, 496
BsrI ACTGG 2 cut(s) 580, 705
BssAI RCCGGY 2 cut(s) 454, 496
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 9 cut(s) 59, 225, 267, 286, 336, 373, 615, 870, 888
BssNI GRCGYC 2 cut(s) 273, 458
BssSI CACGAG 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 859
Bst4CI ACNGT 1 cut(s) 686
Bst6I CTCTTC 2 cut(s) 19, 73
BstACI GRCGYC 2 cut(s) 273, 458
BstC8I GCNNGC 3 cut(s) 204, 384, 498
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 9 cut(s) 62, 228, 270, 289, 339, 376, 618, 873, 891
BstMAI GTCTC 3 cut(s) 642, 811, 875
BstMBI GATC 9 cut(s) 59, 225, 267, 286, 336, 373, 615, 870, 888
BstNI CCWGG 1 cut(s) 859
BstSCI CCNGG 1 cut(s) 857
BstV1I GCAGC 1 cut(s) 620
BstV2I GAAGAC 1 cut(s) 639
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BtgZI GCGATG 1 cut(s) 477
BtrI CACGTC 2 cut(s) 154, 223
BtsCI GGATG 1 cut(s) 361
Cac8I GCNNGC 3 cut(s) 204, 384, 498
Cfr10I RCCGGY 2 cut(s) 454, 496
Cfr13I GGNCC 3 cut(s) 208, 295, 428
CseI GACGC 2 cut(s) 262, 447
CviAII CATG 2 cut(s) 33, 179
DpnI GATC 9 cut(s) 61, 227, 269, 288, 338, 375, 617, 872, 890
DpnII GATC 9 cut(s) 59, 225, 267, 286, 336, 373, 615, 870, 888
Eam1104I CTCTTC 2 cut(s) 19, 73
EarI CTCTTC 2 cut(s) 19, 73
EciI GGCGGA 3 cut(s) 594, 726, 893
Eco130I CCWWGG 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 418
Eco31I GGTCTC 1 cut(s) 642
Eco47I GGWCC 3 cut(s) 208, 295, 428
Eco88I CYCGRG 1 cut(s) 290
EcoO109I RGGNCCY 2 cut(s) 295, 428
EcoRII CCWGG 1 cut(s) 857
EcoT14I CCWWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 211
Esp3I CGTCTC 1 cut(s) 875
FaeI CATG 2 cut(s) 36, 182
FaiI YATR 8 cut(s) 34, 92, 180, 397, 803, 815, 852, 854
FaqI GGGAC 1 cut(s) 569
FatI CATG 2 cut(s) 32, 178
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 552, 609
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 2 cut(s) 552, 609
FspBI CTAG 1 cut(s) 402
GluI GCNGC 2 cut(s) 552, 609
GsuI CTGGAG 1 cut(s) 332
HapII CCGG 2 cut(s) 455, 497
HgaI GACGC 2 cut(s) 262, 447
Hin1I GRCGYC 2 cut(s) 273, 458
Hin1II CATG 2 cut(s) 36, 182
HinfI GANTC 6 cut(s) 47, 502, 564, 582, 721, 733
HpaII CCGG 2 cut(s) 455, 497
HphI GGTGA 4 cut(s) 203, 260, 654, 744
Hpy166II GTNNAC 2 cut(s) 777, 824
Hpy188I TCNGA 9 cut(s) 52, 278, 341, 463, 507, 519, 605, 720, 732
Hpy188III TCNNGA 3 cut(s) 290, 311, 561
Hpy8I GTNNAC 2 cut(s) 777, 824
Hpy99I CGWCG 2 cut(s) 463, 616
HpyAV CCTTC 2 cut(s) 239, 517
HpyCH4III ACNGT 1 cut(s) 686
HpyCH4IV ACGT 3 cut(s) 153, 222, 252
HpyCH4V TGCA 1 cut(s) 399
HpySE526I ACGT 3 cut(s) 153, 222, 252
Hsp92I GRCGYC 2 cut(s) 273, 458
Hsp92II CATG 2 cut(s) 36, 182
KroI GCCGGC 1 cut(s) 496
KroNI GCCGGC 1 cut(s) 498
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 9 cut(s) 59, 225, 267, 286, 336, 373, 615, 870, 888
LguI GCTCTTC 1 cut(s) 19
LmnI GCTCC 2 cut(s) 413, 605
Lsp1109I GCAGC 1 cut(s) 620
MaeI CTAG 1 cut(s) 402
MaeII ACGT 3 cut(s) 153, 222, 252
MaeIII GTNAC 1 cut(s) 248
MalI GATC 9 cut(s) 61, 227, 269, 288, 338, 375, 617, 872, 890
MboI GATC 9 cut(s) 59, 225, 267, 286, 336, 373, 615, 870, 888
MboII GAAGA 6 cut(s) 6, 60, 550, 641, 644, 834
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 2 cut(s) 384, 418
MluCI AATT 5 cut(s) 39, 72, 99, 120, 555
MlyI GAGTC 5 cut(s) 496, 573, 591, 715, 742
MmeI TCCRAC 4 cut(s) 102, 235, 441, 743
MreI CGCCGGCG 1 cut(s) 496
MroNI GCCGGC 1 cut(s) 496
MseI TTAA 2 cut(s) 8, 434
MspI CCGG 2 cut(s) 455, 497
MspR9I CCNGG 1 cut(s) 859
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 1 cut(s) 859
NaeI GCCGGC 1 cut(s) 498
NdeII GATC 9 cut(s) 59, 225, 267, 286, 336, 373, 615, 870, 888
NgoMIV GCCGGC 1 cut(s) 496
NlaIII CATG 2 cut(s) 36, 182
NlaIV GGNNCC 3 cut(s) 297, 415, 429
NmeAIII GCCGAG 2 cut(s) 419, 854
NmuCI GTSAC 1 cut(s) 248
PaeR7I CTCGAG 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 19
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 716
PctI GAATGC 1 cut(s) 533
PdiI GCCGGC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 2 cut(s) 553, 610
PleI GAGTC 5 cut(s) 496, 572, 590, 715, 741
PpsI GAGTC 5 cut(s) 496, 572, 590, 715, 741
PpuMI RGGWCCY 2 cut(s) 295, 428
Psp5II RGGWCCY 2 cut(s) 295, 428
Psp6I CCWGG 1 cut(s) 857
PspGI CCWGG 1 cut(s) 857
PspN4I GGNNCC 3 cut(s) 297, 415, 429
PspPI GGNCC 3 cut(s) 208, 295, 428
PspPPI RGGWCCY 2 cut(s) 295, 428
PsuI RGATCY 1 cut(s) 373
SapI GCTCTTC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 8, 434
SatI GCNGC 2 cut(s) 552, 609
Sau3AI GATC 9 cut(s) 59, 225, 267, 286, 336, 373, 615, 870, 888
Sau96I GGNCC 3 cut(s) 208, 295, 428
SchI GAGTC 5 cut(s) 496, 573, 591, 715, 742
ScrFI CCNGG 1 cut(s) 859
SduI GDGCHC 2 cut(s) 384, 418
Sfr274I CTCGAG 1 cut(s) 290
SgrAI CRCCGGYG 1 cut(s) 496
SinI GGWCC 3 cut(s) 208, 295, 428
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 290, 532
SmoI CTYRAG 2 cut(s) 290, 532
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 5 cut(s) 39, 72, 99, 120, 555
SsiI CCGC 6 cut(s) 127, 206, 552, 579, 737, 878
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 857
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 686
TaiI ACGT 3 cut(s) 156, 225, 255
TaqI TCGA 5 cut(s) 37, 198, 291, 363, 869
TasI AATT 5 cut(s) 39, 72, 99, 120, 555
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 8, 434
Tru9I TTAA 2 cut(s) 8, 434
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 608
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 167, 834
TspGWI ACGGA 2 cut(s) 524, 899
VpaK11BI GGWCC 3 cut(s) 208, 295, 428
XhoI CTCGAG 1 cut(s) 290
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.