Rmu_sc0005072.1_g000009

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005072.1
OG0006912
Physical Location & Seq
Forward (+)
40527 .. 41611
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005072.1_g000009.1.cds

Sequence Viewer

Length: 315 bp
atggagagcaacttgcacctctcgccggaggcctcaagcaattggaagaaattcgtcgacctcgttgtcaagaactctgccagaaggttccgacatgtcgccaatcttgttggaattttacatccatcaaccaaatttccaataaatcttgctaagcgggctgaggctgagaagaagaagatgacgacactgattttgcaccttgccggaattccgatcaacggcgtggcagcacagcttgtgcttctcgacctttgcaaggaactcttcgatctcgtcggttggaggcgctttgctcaccgccgaggtctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009624 GO:0009628 GO:0009705 GO:0010035 GO:0010941 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055081 GO:0055085 GO:0060548 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

104

Amino Acids

11.76

Weight (kDa)

10.49

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 57
AciI CCGC 2 cut(s) 157, 301
AcsI RAATTY 4 cut(s) 50, 114, 134, 210
AfiI CCNNNNNNNGG 3 cut(s) 25, 221, 259
AflIII ACRYGT 1 cut(s) 94
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 4 cut(s) 50, 114, 134, 210
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 242
BccI CCATC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 238
BfoI RGCGCY 1 cut(s) 292
BisI GCNGC 1 cut(s) 231
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 221, 259
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 3 cut(s) 25, 221, 259
BseMII CTCAG 2 cut(s) 153, 159
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 1 cut(s) 32
BsiSI CCGG 2 cut(s) 26, 207
BslI CCNNNNNNNGG 3 cut(s) 25, 221, 259
BsnI GGCC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 216, 271
Bsp1720I GCTNAGC 1 cut(s) 153
BspACI CCGC 2 cut(s) 157, 301
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 154, 160
BspLI GGNNCC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 216, 271
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 153, 162, 168
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 292
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 2 cut(s) 219, 274
BstMBI GATC 2 cut(s) 216, 271
BstMWI GCNNNNNNNGC 2 cut(s) 22, 158
BstNSI RCATGY 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 242
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 1 cut(s) 291
CviAII CATG 1 cut(s) 95
CviJI RGCY 4 cut(s) 32, 161, 167, 238
CviKI_1 RGCY 4 cut(s) 32, 161, 167, 238
DdeI CTNAG 3 cut(s) 153, 162, 168
DpnI GATC 2 cut(s) 218, 273
DpnII GATC 2 cut(s) 216, 271
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco147I AGGCCT 1 cut(s) 32
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRI GAATTC 1 cut(s) 210
FaeI CATG 1 cut(s) 98
FaiI YATR 1 cut(s) 96
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 1 cut(s) 94
FauI CCCGC 1 cut(s) 150
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 231
GlaI GCGC 1 cut(s) 290
GluI GCNGC 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 292
HaeIII GGCC 1 cut(s) 32
HapII CCGG 2 cut(s) 26, 207
HhaI GCGC 1 cut(s) 291
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HpaII CCGG 2 cut(s) 26, 207
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 3 cut(s) 92, 216, 314
Hpy188III TCNNGA 2 cut(s) 70, 248
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 2 cut(s) 59, 281
HpyAV CCTTC 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 16, 199, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 158
HpyF3I CTNAG 3 cut(s) 153, 162, 168
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 216, 271
LpnPI CCDG 3 cut(s) 39, 94, 220
Lsp1109I GCAGC 1 cut(s) 242
MalI GATC 2 cut(s) 218, 273
MboI GATC 2 cut(s) 216, 271
MboII GAAGA 5 cut(s) 58, 184, 187, 190, 259
MfeI CAATTG 1 cut(s) 40
MluCI AATT 5 cut(s) 40, 50, 114, 134, 210
MmeI TCCRAC 3 cut(s) 91, 115, 263
MnlI CCTC 7 cut(s) 22, 29, 43, 71, 157, 279, 299
MroXI GAANNNNTTC 1 cut(s) 50
MspI CCGG 2 cut(s) 26, 207
MunI CAATTG 1 cut(s) 40
MwoI GCNNNNNNNGC 2 cut(s) 22, 158
NdeII GATC 2 cut(s) 216, 271
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 89
NspI RCATGY 1 cut(s) 98
PceI AGGCCT 1 cut(s) 32
PciI ACATGT 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 232
PscI ACATGT 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 89
SalI GTCGAC 1 cut(s) 56
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 2 cut(s) 216, 271
SetI ASST 7 cut(s) 21, 63, 89, 204, 240, 255, 310
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 5 cut(s) 40, 50, 114, 134, 210
SseBI AGGCCT 1 cut(s) 32
SsiI CCGC 2 cut(s) 157, 301
StuI AGGCCT 1 cut(s) 32
TaqI TCGA 3 cut(s) 57, 249, 270
TasI AATT 5 cut(s) 40, 50, 114, 134, 210
TscAI CASTG 1 cut(s) 195
TseI GCWGC 1 cut(s) 230
TspRI CASTG 1 cut(s) 195
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 4 cut(s) 50, 114, 134, 210
XceI RCATGY 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.