Rh6AG001100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006912
Physical Location & Seq
Forward (+)
303088 .. 303805
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG001100.1

Sequence Viewer

Length: 456 bp
ATGAGACTGGGCGAGGTCGTGCTCCACAATCGCATCCAAACGGAGGAGCGTGGAGTTGACGCGGGACTGGGCGAGGTCGAGCTCGCGGACCTTGGCGCTGACTTGGTCGGTGAGGTCGCAGGTGGAGGAGACATTGGAGAGGACGTGGTCGACATTGGACTTGACGATGTCGAGGACCTGGGAGGATTTCTGGAGATTGGAGAGGTCGTGGATCTTGGCACTGACGTGGTCAGCGAGATCGTAGGTGGAGGAGACGTGGTCGACGTCGGACTTGACGATGTCGAGGACCTGGGAGGATTTCTGGAGATTGGAGAGGTGCTTGTCGAGGTCGGAGTGCTGGGAGAGAGGAGGTGGTCGAGGTTGAGATCCAGGGTGAGTCGTGGACTGCGGCGGAGGAGGAGAGTCGTCGCTGACTGGGACGGTGAGGAGGACCAGCGCCGGTGGCGATTCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.46

Weight (kDa)

4.23

Isoelectric Point (pI)

58.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 110
AatII GACGTC 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 110
AccI GTMKAC 2 cut(s) 150, 261
AccII CGCG 2 cut(s) 62, 86
AciI CCGC 4 cut(s) 62, 86, 388, 391
AclWI GGATC 2 cut(s) 219, 360
AcyI GRCGYC 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 43
AjiI CACGTC 3 cut(s) 145, 226, 256
AjnI CCWGG 3 cut(s) 177, 288, 368
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw21I GWGCWC 2 cut(s) 24, 84
Alw26I GTCTC 2 cut(s) 123, 246
AlwI GGATC 2 cut(s) 219, 360
AspLEI GCGC 2 cut(s) 98, 438
AspS9I GGNCC 4 cut(s) 88, 175, 286, 430
AsuHPI GGTGA 3 cut(s) 122, 385, 434
AvaII GGWCC 4 cut(s) 88, 175, 286, 430
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 24, 84
BciT130I CCWGG 3 cut(s) 179, 290, 370
BcoDI GTCTC 2 cut(s) 123, 246
BfoI RGCGCY 2 cut(s) 99, 439
BfuAI ACCTGC 1 cut(s) 110
BisI GCNGC 1 cut(s) 389
BlsI GCNGC 1 cut(s) 390
Bme1390I CCNGG 3 cut(s) 179, 290, 370
Bme18I GGWCC 4 cut(s) 88, 175, 286, 430
BmgBI CACGTC 3 cut(s) 145, 226, 256
BmgT120I GGNCC 4 cut(s) 88, 175, 286, 430
BmrFI CCNGG 3 cut(s) 179, 290, 370
BmrI ACTGGG 3 cut(s) 17, 77, 424
BmsI GCATC 1 cut(s) 42
BmuI ACTGGG 3 cut(s) 17, 77, 424
BpmI CTGGAG 2 cut(s) 212, 323
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 4 cut(s) 91, 178, 289, 369
BsaXI ACNNNNNCTCC 8 cut(s) 129, 159, 192, 222, 240, 243, 270, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 438
Bse1I ACTGG 3 cut(s) 12, 72, 419
BseBI CCWGG 3 cut(s) 179, 290, 370
BseDI CCNNGG 4 cut(s) 91, 178, 289, 369
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 43
BseNI ACTGG 3 cut(s) 12, 72, 419
BseRI GAGGAG 7 cut(s) 59, 141, 264, 361, 409, 412, 440
BseYI CCCAGC 1 cut(s) 337
Bsh1236I CGCG 2 cut(s) 62, 86
BsiHKAI GWGCWC 2 cut(s) 24, 84
BsiSI CCGG 1 cut(s) 439
BslFI GGGAC 2 cut(s) 78, 431
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 123, 246
BsmBI CGTCTC 1 cut(s) 246
BsmFI GGGAC 2 cut(s) 78, 431
Bsp1286I GDGCHC 2 cut(s) 24, 84
Bsp143I GATC 3 cut(s) 211, 237, 365
BspACI CCGC 4 cut(s) 62, 86, 388, 391
BspFNI CGCG 2 cut(s) 62, 86
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 2 cut(s) 219, 360
BsrFI RCCGGY 1 cut(s) 438
BsrI ACTGG 3 cut(s) 12, 72, 419
BssAI RCCGGY 1 cut(s) 438
BssECI CCNNGG 4 cut(s) 91, 178, 289, 369
BssMI GATC 3 cut(s) 211, 237, 365
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 3 cut(s) 179, 290, 370
Bst4CI ACNGT 1 cut(s) 422
BstACI GRCGYC 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 84
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 2 cut(s) 62, 86
BstH2I RGCGCY 2 cut(s) 99, 439
BstHHI GCGC 2 cut(s) 98, 438
BstKTI GATC 3 cut(s) 214, 240, 368
BstMAI GTCTC 2 cut(s) 123, 246
BstMBI GATC 3 cut(s) 211, 237, 365
BstMWI GCNNNNNNNGC 1 cut(s) 442
BstNI CCWGG 3 cut(s) 179, 290, 370
BstSCI CCNGG 3 cut(s) 177, 288, 368
BstUI CGCG 2 cut(s) 62, 86
BstX2I RGATCY 2 cut(s) 211, 365
BstYI RGATCY 2 cut(s) 211, 365
BtrI CACGTC 3 cut(s) 145, 226, 256
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 84
CfoI GCGC 2 cut(s) 98, 438
Cfr10I RCCGGY 1 cut(s) 438
Cfr13I GGNCC 4 cut(s) 88, 175, 286, 430
CseI GACGC 1 cut(s) 68
CviJI RGCY 1 cut(s) 82
CviKI_1 RGCY 1 cut(s) 82
DpnI GATC 3 cut(s) 213, 239, 367
DpnII GATC 3 cut(s) 211, 237, 365
EciI GGCGGA 1 cut(s) 406
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 4 cut(s) 88, 175, 286, 430
Eco53kI GAGCTC 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 82
EcoO109I RGGNCCY 2 cut(s) 175, 286
EcoRII CCWGG 3 cut(s) 177, 288, 368
EcoT14I CCWWGG 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 91
Esp3I CGTCTC 1 cut(s) 246
FaqI GGGAC 2 cut(s) 78, 431
FauI CCCGC 1 cut(s) 55
FblI GTMKAC 2 cut(s) 150, 261
Fnu4HI GCNGC 1 cut(s) 389
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 389
GlaI GCGC 2 cut(s) 97, 437
GluI GCNGC 1 cut(s) 389
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 2 cut(s) 212, 323
HaeII RGCGCY 2 cut(s) 99, 439
HapII CCGG 1 cut(s) 439
HgaI GACGC 1 cut(s) 68
HhaI GCGC 2 cut(s) 98, 438
Hin1I GRCGYC 1 cut(s) 264
Hin6I GCGC 2 cut(s) 96, 436
HinP1I GCGC 2 cut(s) 96, 436
HincII GTYRAC 3 cut(s) 58, 151, 262
HindII GTYRAC 3 cut(s) 58, 151, 262
HinfI GANTC 3 cut(s) 376, 402, 447
HpaII CCGG 1 cut(s) 439
HphI GGTGA 3 cut(s) 122, 385, 434
Hpy166II GTNNAC 4 cut(s) 58, 151, 262, 383
Hpy188I TCNGA 2 cut(s) 269, 332
Hpy188III TCNNGA 2 cut(s) 191, 302
Hpy8I GTNNAC 4 cut(s) 58, 151, 262, 383
Hpy99I CGWCG 3 cut(s) 266, 269, 410
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4IV ACGT 4 cut(s) 144, 225, 255, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 442
HpySE526I ACGT 4 cut(s) 144, 225, 255, 264
Hsp92I GRCGYC 1 cut(s) 264
HspAI GCGC 2 cut(s) 96, 436
Kzo9I GATC 3 cut(s) 211, 237, 365
LmnI GCTCC 2 cut(s) 27, 46
LweI GCATC 1 cut(s) 42
MaeII ACGT 4 cut(s) 144, 225, 255, 264
MalI GATC 3 cut(s) 213, 239, 367
MboI GATC 3 cut(s) 211, 237, 365
MflI RGATCY 2 cut(s) 211, 365
MhlI GDGCHC 2 cut(s) 24, 84
MlyI GAGTC 2 cut(s) 385, 411
MmeI TCCRAC 2 cut(s) 247, 310
MseI TTAA 1 cut(s) 454
MslI CAYNNNNRTG 1 cut(s) 224
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 3 cut(s) 179, 290, 370
MvaI CCWGG 3 cut(s) 179, 290, 370
MvnI CGCG 2 cut(s) 62, 86
MwoI GCNNNNNNNGC 1 cut(s) 442
NdeII GATC 3 cut(s) 211, 237, 365
OliI CACNNNNGTG 1 cut(s) 224
PaqCI CACCTGC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 3 cut(s) 231, 261, 273
PfeI GAWTC 1 cut(s) 447
PflFI GACNNNGTC 6 cut(s) 104, 146, 167, 227, 257, 278
PkrI GCNGC 1 cut(s) 390
PleI GAGTC 2 cut(s) 384, 410
PpsI GAGTC 2 cut(s) 384, 410
PpuMI RGGWCCY 2 cut(s) 175, 286
Psp124BI GAGCTC 1 cut(s) 84
Psp5II RGGWCCY 2 cut(s) 175, 286
Psp6I CCWGG 3 cut(s) 177, 288, 368
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 3 cut(s) 177, 288, 368
PspPI GGNCC 4 cut(s) 88, 175, 286, 430
PspPPI RGGWCCY 2 cut(s) 175, 286
PsuI RGATCY 2 cut(s) 211, 365
PsyI GACNNNGTC 6 cut(s) 104, 146, 167, 227, 257, 278
RseI CAYNNNNRTG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 84
SalI GTCGAC 2 cut(s) 149, 260
SaqAI TTAA 1 cut(s) 454
SatI GCNGC 1 cut(s) 389
Sau3AI GATC 3 cut(s) 211, 237, 365
Sau96I GGNCC 4 cut(s) 88, 175, 286, 430
SchI GAGTC 2 cut(s) 385, 411
ScrFI CCNGG 3 cut(s) 179, 290, 370
SduI GDGCHC 2 cut(s) 24, 84
SfaNI GCATC 1 cut(s) 42
SgrAI CRCCGGYG 1 cut(s) 438
SinI GGWCC 4 cut(s) 88, 175, 286, 430
SmiMI CAYNNNNRTG 1 cut(s) 224
SsiI CCGC 4 cut(s) 62, 86, 388, 391
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 3 cut(s) 177, 288, 368
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 1 cut(s) 422
TaiI ACGT 4 cut(s) 147, 228, 258, 267
TaqI TCGA 7 cut(s) 78, 150, 171, 261, 282, 324, 356
TauI GCSGC 1 cut(s) 391
TfiI GAWTC 1 cut(s) 447
Tru1I TTAA 1 cut(s) 454
Tru9I TTAA 1 cut(s) 454
TscAI CASTG 1 cut(s) 226
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 226
Tth111I GACNNNGTC 6 cut(s) 104, 146, 167, 227, 257, 278
VpaK11BI GGWCC 4 cut(s) 88, 175, 286, 430
XmiI GTMKAC 2 cut(s) 150, 261
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.