Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006912

Physical Location & Seq

Genomic Coordinates Reverse (-)

27159389 .. 27160405

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG170200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGGAGCGTGGAGTTAAGGCGCGACTGGGCGAGGTCGAGCTCGCGGACCTTGGCGCTGACGTGGTCGGTGAGGTTGCAGGTGGAGGAGACGTTGGAGAGGACGTGATCGGCGTCGGACTTGACGATGTCGAGGACCTGGGAGGATTTCTGGAGATTGGAGAGGTCGCGGATCTTGGCGCTGACGTGGTCGGCGAGGTCGCAGGTGGAGGAGACGTTGGAGAGGACGTGATCGGCGTCGGACTTGACGATGTCGAGGACCTGGGAGGATTTCTGGAGATTGGAGAGGTCGCGGATCTTGTCGCTGACGTGGTCGGCGAGGTCGCAGGTGGAGGAGACGTTGGAGAGGACGTGGTCGGCGTCGGACTTGACGATGTCGAGGACCTGGGAGGATTTCTGGAGATTGGAGAGGTGCTTGTCGAGGTTGGAGCGCTGGGAGAGAGGAGGTGGTCGAGGTTGAGATCCAGGGCGAGCTGTGGACTGCGGCGGAGGAGGAGAGTCGTCGCTGACTGGGACGGTGAGGAGGACCAGCGCCGATGGCGATTGGTCAAATATAAAACTAGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

19.64

Weight (kDa)

4.05

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07420
rosa_laevigata	RLG00000000660 RLG00000002907 RLG00000007972 RLG00000009435
rosa_multiflora	Rmu_sc0005072.1_g000009 Rmu_sc0024469.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121510
rosa_rugosa	Rorug05G0102500 Rorug07G0132700
rosa_samantha	Rh1AG344800 Rh1BG170200 Rh1CG262000 Rh2AG051400 Rh2BG245700 Rh2DG331100 Rh3BG137600 Rh3DG139000 Rh3DG303000 Rh5AG377200 Rh5BG534400 Rh6AG001100 Rh7AG343400 Rh7BG401400 Rh7CG360900 Rh7CG470900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	71, 194, 317
Acc36I	ACCTGC	3 cut(s)	71, 194, 317
AccII	CGCG	4 cut(s)	25, 47, 170, 293
AciI	CCGC	5 cut(s)	47, 170, 293, 484, 487
AclWI	GGATC	3 cut(s)	180, 303, 456
AcyI	GRCGYC	3 cut(s)	114, 237, 360
AfeI	AGCGCT	1 cut(s)	432
AhlI	ACTAGT	1 cut(s)	560
AjiI	CACGTC	6 cut(s)	64, 106, 187, 229, 310, 352
AjnI	CCWGG	4 cut(s)	138, 261, 384, 464
AluBI	AGCT	2 cut(s)	43, 474
AluI	AGCT	2 cut(s)	43, 474
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	3 cut(s)	84, 207, 330
AlwI	GGATC	3 cut(s)	180, 303, 456
Aor51HI	AGCGCT	1 cut(s)	432
AspLEI	GCGC	5 cut(s)	25, 59, 182, 433, 534
AspS9I	GGNCC	5 cut(s)	49, 136, 259, 382, 526
AsuHPI	GGTGA	2 cut(s)	83, 530
AvaII	GGWCC	5 cut(s)	49, 136, 259, 382, 526
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BccI	CCATC	1 cut(s)	531
BciT130I	CCWGG	4 cut(s)	140, 263, 386, 466
BcoDI	GTCTC	3 cut(s)	84, 207, 330
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	1 cut(s)	561
BfoI	RGCGCY	4 cut(s)	60, 183, 434, 535
BfuAI	ACCTGC	3 cut(s)	71, 194, 317
BisI	GCNGC	1 cut(s)	485
BlsI	GCNGC	1 cut(s)	486
Bme1390I	CCNGG	4 cut(s)	140, 263, 386, 466
Bme18I	GGWCC	5 cut(s)	49, 136, 259, 382, 526
BmgBI	CACGTC	6 cut(s)	64, 106, 187, 229, 310, 352
BmgT120I	GGNCC	5 cut(s)	49, 136, 259, 382, 526
BmrFI	CCNGG	4 cut(s)	140, 263, 386, 466
BmrI	ACTGGG	2 cut(s)	38, 520
BmuI	ACTGGG	2 cut(s)	38, 520
BpmI	CTGGAG	3 cut(s)	173, 296, 419
BsaHI	GRCGYC	3 cut(s)	114, 237, 360
BsaJI	CCNNGG	5 cut(s)	52, 139, 262, 385, 465
Bse1I	ACTGG	2 cut(s)	33, 515
BseBI	CCWGG	4 cut(s)	140, 263, 386, 466
BseDI	CCNNGG	5 cut(s)	52, 139, 262, 385, 465
BseNI	ACTGG	2 cut(s)	33, 515
BseRI	GAGGAG	8 cut(s)	20, 102, 225, 348, 457, 505, 508, 536
BseYI	CCCAGC	1 cut(s)	433
Bsh1236I	CGCG	4 cut(s)	25, 47, 170, 293
BsiHKAI	GWGCWC	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	527
BsmAI	GTCTC	3 cut(s)	84, 207, 330
BsmBI	CGTCTC	3 cut(s)	84, 207, 330
BsmFI	GGGAC	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	5 cut(s)	108, 172, 231, 295, 461
BspACI	CCGC	5 cut(s)	47, 170, 293, 484, 487
BspFNI	CGCG	4 cut(s)	25, 47, 170, 293
BspMI	ACCTGC	3 cut(s)	71, 194, 317
BspPI	GGATC	3 cut(s)	180, 303, 456
BsrI	ACTGG	2 cut(s)	33, 515
BssECI	CCNNGG	5 cut(s)	52, 139, 262, 385, 465
BssMI	GATC	5 cut(s)	108, 172, 231, 295, 461
BssNI	GRCGYC	3 cut(s)	114, 237, 360
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	4 cut(s)	140, 263, 386, 466
Bst4CI	ACNGT	1 cut(s)	518
BstACI	GRCGYC	3 cut(s)	114, 237, 360
BstC8I	GCNNGC	2 cut(s)	45, 472
BstFNI	CGCG	4 cut(s)	25, 47, 170, 293
BstH2I	RGCGCY	4 cut(s)	60, 183, 434, 535
BstHHI	GCGC	5 cut(s)	25, 59, 182, 433, 534
BstKTI	GATC	5 cut(s)	111, 175, 234, 298, 464
BstMAI	GTCTC	3 cut(s)	84, 207, 330
BstMBI	GATC	5 cut(s)	108, 172, 231, 295, 461
BstMWI	GCNNNNNNNGC	1 cut(s)	538
BstNI	CCWGG	4 cut(s)	140, 263, 386, 466
BstSCI	CCNGG	4 cut(s)	138, 261, 384, 464
BstUI	CGCG	4 cut(s)	25, 47, 170, 293
BstX2I	RGATCY	3 cut(s)	172, 295, 461
BstYI	RGATCY	3 cut(s)	172, 295, 461
BtrI	CACGTC	6 cut(s)	64, 106, 187, 229, 310, 352
BveI	ACCTGC	3 cut(s)	71, 194, 317
Cac8I	GCNNGC	2 cut(s)	45, 472
CfoI	GCGC	5 cut(s)	25, 59, 182, 433, 534
Cfr13I	GGNCC	5 cut(s)	49, 136, 259, 382, 526
CseI	GACGC	3 cut(s)	103, 226, 349
CviJI	RGCY	2 cut(s)	43, 474
CviKI_1	RGCY	2 cut(s)	43, 474
DpnI	GATC	5 cut(s)	110, 174, 233, 297, 463
DpnII	GATC	5 cut(s)	108, 172, 231, 295, 461
EciI	GGCGGA	1 cut(s)	502
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	5 cut(s)	49, 136, 259, 382, 526
Eco47III	AGCGCT	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	43
EcoO109I	RGGNCCY	3 cut(s)	136, 259, 382
EcoRII	CCWGG	4 cut(s)	138, 261, 384, 464
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	3 cut(s)	84, 207, 330
FaiI	YATR	1 cut(s)	555
FaqI	GGGAC	1 cut(s)	527
Fnu4HI	GCNGC	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	485
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	5 cut(s)	24, 58, 181, 432, 533
GluI	GCNGC	1 cut(s)	485
GsaI	CCCAGC	1 cut(s)	437
GsuI	CTGGAG	3 cut(s)	173, 296, 419
HaeII	RGCGCY	4 cut(s)	60, 183, 434, 535
HgaI	GACGC	3 cut(s)	103, 226, 349
HhaI	GCGC	5 cut(s)	25, 59, 182, 433, 534
Hin1I	GRCGYC	3 cut(s)	114, 237, 360
Hin6I	GCGC	5 cut(s)	23, 57, 180, 431, 532
HinP1I	GCGC	5 cut(s)	23, 57, 180, 431, 532
HinfI	GANTC	1 cut(s)	498
HphI	GGTGA	2 cut(s)	83, 530
Hpy166II	GTNNAC	1 cut(s)	479
Hpy188I	TCNGA	3 cut(s)	119, 242, 365
Hpy188III	TCNNGA	3 cut(s)	152, 275, 398
Hpy8I	GTNNAC	1 cut(s)	479
Hpy99I	CGWCG	4 cut(s)	119, 242, 365, 506
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	9 cut(s)	63, 93, 105, 186, 216, 228, 309, 339, 351
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	538
HpySE526I	ACGT	9 cut(s)	63, 93, 105, 186, 216, 228, 309, 339, 351
Hsp92I	GRCGYC	3 cut(s)	114, 237, 360
HspAI	GCGC	5 cut(s)	23, 57, 180, 431, 532
Kzo9I	GATC	5 cut(s)	108, 172, 231, 295, 461
LmnI	GCTCC	2 cut(s)	7, 428
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	9 cut(s)	63, 93, 105, 186, 216, 228, 309, 339, 351
MalI	GATC	5 cut(s)	110, 174, 233, 297, 463
MboI	GATC	5 cut(s)	108, 172, 231, 295, 461
MflI	RGATCY	3 cut(s)	172, 295, 461
MhlI	GDGCHC	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	507
MmeI	TCCRAC	7 cut(s)	76, 97, 199, 220, 322, 343, 406
MseI	TTAA	1 cut(s)	18
MspR9I	CCNGG	4 cut(s)	140, 263, 386, 466
MvaI	CCWGG	4 cut(s)	140, 263, 386, 466
MvnI	CGCG	4 cut(s)	25, 47, 170, 293
MwoI	GCNNNNNNNGC	1 cut(s)	538
NdeII	GATC	5 cut(s)	108, 172, 231, 295, 461
PaqCI	CACCTGC	3 cut(s)	71, 194, 317
PcsI	WCGNNNNNNNCGW	8 cut(s)	111, 123, 192, 234, 246, 315, 357, 369
PflFI	GACNNNGTC	7 cut(s)	65, 128, 188, 251, 311, 353, 374
PkrI	GCNGC	1 cut(s)	486
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PpuMI	RGGWCCY	3 cut(s)	136, 259, 382
Psp124BI	GAGCTC	1 cut(s)	45
Psp5II	RGGWCCY	3 cut(s)	136, 259, 382
Psp6I	CCWGG	4 cut(s)	138, 261, 384, 464
PspFI	CCCAGC	1 cut(s)	433
PspGI	CCWGG	4 cut(s)	138, 261, 384, 464
PspPI	GGNCC	5 cut(s)	49, 136, 259, 382, 526
PspPPI	RGGWCCY	3 cut(s)	136, 259, 382
PsuI	RGATCY	3 cut(s)	172, 295, 461
PsyI	GACNNNGTC	7 cut(s)	65, 128, 188, 251, 311, 353, 374
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	485
Sau3AI	GATC	5 cut(s)	108, 172, 231, 295, 461
Sau96I	GGNCC	5 cut(s)	49, 136, 259, 382, 526
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	4 cut(s)	140, 263, 386, 466
SduI	GDGCHC	1 cut(s)	45
SinI	GGWCC	5 cut(s)	49, 136, 259, 382, 526
SpeI	ACTAGT	1 cut(s)	560
SsiI	CCGC	5 cut(s)	47, 170, 293, 484, 487
SspMI	CTAG	1 cut(s)	561
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	4 cut(s)	138, 261, 384, 464
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	9 cut(s)	66, 96, 108, 189, 219, 231, 312, 342, 354
TaqI	TCGA	6 cut(s)	39, 132, 255, 378, 420, 452
TauI	GCSGC	1 cut(s)	487
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
Tth111I	GACNNNGTC	7 cut(s)	65, 128, 188, 251, 311, 353, 374
VpaK11BI	GGWCC	5 cut(s)	49, 136, 259, 382, 526
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.