Rh2BG245700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006912
Physical Location & Seq
Reverse (-)
25024999 .. 25027715
2717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG245700.1

Sequence Viewer

Length: 573 bp
ATGAACTGCACTGAGTCAAGTCGTCTGGAGGAGGTGCTGCTGGGCCTGGAGGAGGTAATGGAACGGCGGTGCCACGATGGAGGATGGCGAAGGAGGCGGTGGGTCCTGGGTGGAAGGGTAGGTGGCGGACTGGACTTGATGGGTGGTAATGGCAGTGGTGGTGTTGCAGTTGTTGGCATTGTTGTCCATTGGGCCTATCTGTCTAGCCCTTCATTGTCTTACTATTATAGAGCGAGTCCAGATCTTCTTCACCTGGTTGACTGGTTTGGTTTCTTCACCTCCAAACCAAAATATCGAAATGGAGAGCTACTTGCTCCCCTCGCCGGAGGCCTCAAGCAATTGGAAGAAATTCGTCAGTCTCGTCGTCAAGAACCCGCCAGAAAGTTTCGACATGTCTTCGATCTTGCTAAGCTGGCTGAGGCTGAGAAGAAGAAGAAGACGACGACATTGATTTTGCACCTTGCTGGAATTCCGATCAACGGCGTGGCGGCACAGCTTTTGCTTCTCGGCCGTTGTGAAGAACTCTTCGATCCCGTCTATTGCAAGAACTTTGCTCACCGCCGAGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.33

Weight (kDa)

9.51

Isoelectric Point (pI)

61.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 69
AciI CCGC 6 cut(s) 67, 97, 126, 375, 488, 559
AclWI GGATC 1 cut(s) 524
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 2 cut(s) 348, 468
AfiI CCNNNNNNNGG 3 cut(s) 52, 323, 479
AflIII ACRYGT 1 cut(s) 391
AjnI CCWGG 3 cut(s) 45, 105, 252
AluBI AGCT 3 cut(s) 307, 412, 496
AluI AGCT 3 cut(s) 307, 412, 496
Alw26I GTCTC 1 cut(s) 363
AlwI GGATC 1 cut(s) 524
AoxI GGCC 4 cut(s) 43, 192, 328, 508
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 2 cut(s) 348, 468
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
Asp700I GAANNNNTTC 1 cut(s) 348
AspS9I GGNCC 3 cut(s) 43, 103, 192
AsuHPI GGTGA 3 cut(s) 242, 268, 548
AvaII GGWCC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 388, 443
BbvCI CCTCAGC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 24
BccI CCATC 3 cut(s) 71, 78, 133
BceAI ACGGC 3 cut(s) 80, 495, 496
BciT130I CCWGG 3 cut(s) 47, 107, 254
BcoDI GTCTC 1 cut(s) 363
BfaI CTAG 1 cut(s) 204
BglII AGATCT 1 cut(s) 241
BisI GCNGC 2 cut(s) 38, 489
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 2 cut(s) 39, 490
Bme1390I CCNGG 3 cut(s) 47, 107, 254
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 3 cut(s) 43, 103, 192
BmiI GGNNCC 2 cut(s) 71, 104
BmrFI CCNGG 3 cut(s) 47, 107, 254
BpiI GAAGAC 2 cut(s) 388, 443
BpmI CTGGAG 2 cut(s) 47, 68
Bpu10I CCTNAGC 1 cut(s) 417
Bpu1102I GCTNAGC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 106, 562
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 323, 479
Bse1I ACTGG 2 cut(s) 135, 266
BseBI CCWGG 3 cut(s) 47, 107, 254
BseDI CCNNGG 2 cut(s) 106, 562
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 3 cut(s) 52, 323, 479
BseMII CTCAG 2 cut(s) 408, 414
BseNI ACTGG 2 cut(s) 135, 266
BseRI GAGGAG 2 cut(s) 44, 65
BseX3I CGGCCG 1 cut(s) 508
BseXI GCAGC 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 511
BshFI GGCC 4 cut(s) 45, 194, 330, 510
BshNI GGYRCC 1 cut(s) 69
BsiEI CGRYCG 1 cut(s) 511
BsiSI CCGG 1 cut(s) 324
BslI CCNNNNNNNGG 3 cut(s) 52, 323, 479
BsmAI GTCTC 1 cut(s) 363
BsnI GGCC 4 cut(s) 45, 194, 330, 510
Bsp143I GATC 4 cut(s) 241, 400, 474, 529
Bsp1720I GCTNAGC 1 cut(s) 408
BspACI CCGC 6 cut(s) 67, 97, 126, 375, 488, 559
BspANI GGCC 4 cut(s) 45, 194, 330, 510
BspCNI CTCAG 3 cut(s) 4, 409, 415
BspLI GGNNCC 2 cut(s) 71, 104
BspPI GGATC 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 69
BsrI ACTGG 2 cut(s) 135, 266
BssECI CCNNGG 2 cut(s) 106, 562
BssMI GATC 4 cut(s) 241, 400, 474, 529
Bst2UI CCWGG 3 cut(s) 47, 107, 254
Bst6I CTCTTC 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 4 cut(s) 12, 408, 417, 423
BstENI CCTNNNNNAGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 4 cut(s) 244, 403, 477, 532
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 4 cut(s) 241, 400, 474, 529
BstMCI CGRYCG 1 cut(s) 511
BstMWI GCNNNNNNNGC 3 cut(s) 94, 320, 413
BstNI CCWGG 3 cut(s) 47, 107, 254
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 3 cut(s) 45, 105, 252
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 2 cut(s) 388, 443
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BstZI CGGCCG 1 cut(s) 508
BsuRI GGCC 4 cut(s) 45, 194, 330, 510
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 2 cut(s) 9, 160
Cac8I GCNNGC 1 cut(s) 414
Cfr13I GGNCC 3 cut(s) 43, 103, 192
CsiI ACCWGGT 1 cut(s) 252
CviAII CATG 1 cut(s) 392
DdeI CTNAG 4 cut(s) 12, 408, 417, 423
DpnI GATC 4 cut(s) 243, 402, 476, 531
DpnII GATC 4 cut(s) 241, 400, 474, 529
EaeI YGGCCR 1 cut(s) 508
EagI CGGCCG 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
EciI GGCGGA 1 cut(s) 141
EclXI CGGCCG 1 cut(s) 508
Eco147I AGGCCT 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 103
Eco52I CGGCCG 1 cut(s) 508
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 468
EcoRII CCWGG 3 cut(s) 45, 105, 252
FaeI CATG 1 cut(s) 395
FaiI YATR 2 cut(s) 228, 393
FatI CATG 1 cut(s) 391
FauI CCCGC 1 cut(s) 382
Fnu4HI GCNGC 2 cut(s) 38, 489
FokI GGATG 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 38, 489
FspBI CTAG 1 cut(s) 204
GluI GCNGC 2 cut(s) 38, 489
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 2 cut(s) 47, 68
HaeIII GGCC 4 cut(s) 45, 194, 330, 510
HapII CCGG 1 cut(s) 324
Hin1II CATG 1 cut(s) 395
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 2 cut(s) 14, 235
HpaII CCGG 1 cut(s) 324
HphI GGTGA 3 cut(s) 242, 268, 548
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 474
Hpy188III TCNNGA 3 cut(s) 26, 239, 368
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 2 cut(s) 366, 445
HpyAV CCTTC 3 cut(s) 84, 108, 219
HpyCH4V TGCA 4 cut(s) 9, 167, 457, 543
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 320, 413
HpyF3I CTNAG 4 cut(s) 12, 408, 417, 423
Hsp92II CATG 1 cut(s) 395
Kzo9I GATC 4 cut(s) 241, 400, 474, 529
LmnI GCTCC 1 cut(s) 319
Lsp1109I GCAGC 1 cut(s) 24
MabI ACCWGGT 1 cut(s) 252
MaeI CTAG 1 cut(s) 204
MalI GATC 4 cut(s) 243, 402, 476, 531
MboI GATC 4 cut(s) 241, 400, 474, 529
MfeI CAATTG 1 cut(s) 338
MflI RGATCY 1 cut(s) 241
MluCI AATT 3 cut(s) 338, 348, 468
MlyI GAGTC 2 cut(s) 23, 244
MroXI GAANNNNTTC 1 cut(s) 348
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 3 cut(s) 47, 107, 254
MunI CAATTG 1 cut(s) 338
MvaI CCWGG 3 cut(s) 47, 107, 254
MwoI GCNNNNNNNGC 3 cut(s) 94, 320, 413
NdeII GATC 4 cut(s) 241, 400, 474, 529
NlaIII CATG 1 cut(s) 395
NlaIV GGNNCC 2 cut(s) 71, 104
NmeAIII GCCGAG 1 cut(s) 486
NspI RCATGY 1 cut(s) 395
PceI AGGCCT 1 cut(s) 330
PciI ACATGT 1 cut(s) 391
PcsI WCGNNNNNNNCGW 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 348
PkrI GCNGC 2 cut(s) 39, 490
PleI GAGTC 2 cut(s) 22, 243
PpsI GAGTC 2 cut(s) 22, 243
PpuMI RGGWCCY 1 cut(s) 103
PscI ACATGT 1 cut(s) 391
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 3 cut(s) 45, 105, 252
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 3 cut(s) 45, 105, 252
PspN4I GGNNCC 2 cut(s) 71, 104
PspPI GGNCC 3 cut(s) 43, 103, 192
PspPPI RGGWCCY 1 cut(s) 103
PsuI RGATCY 1 cut(s) 241
SatI GCNGC 2 cut(s) 38, 489
Sau3AI GATC 4 cut(s) 241, 400, 474, 529
Sau96I GGNCC 3 cut(s) 43, 103, 192
SchI GAGTC 2 cut(s) 23, 244
ScrFI CCNGG 3 cut(s) 47, 107, 254
SexAI ACCWGGT 1 cut(s) 252
SinI GGWCC 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 3 cut(s) 338, 348, 468
SseBI AGGCCT 1 cut(s) 330
SsiI CCGC 6 cut(s) 67, 97, 126, 375, 488, 559
SspMI CTAG 1 cut(s) 204
StuI AGGCCT 1 cut(s) 330
StyD4I CCNGG 3 cut(s) 45, 105, 252
TaqI TCGA 4 cut(s) 295, 388, 399, 528
TasI AATT 3 cut(s) 338, 348, 468
TauI GCSGC 1 cut(s) 491
TscAI CASTG 2 cut(s) 16, 160
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 17, 201
TspRI CASTG 2 cut(s) 16, 160
VpaK11BI GGWCC 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 50
XapI RAATTY 2 cut(s) 348, 468
XceI RCATGY 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.