Rh1CG262000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006912
Physical Location & Seq
Forward (+)
52636318 .. 52637791
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG262000.1

Sequence Viewer

Length: 450 bp
ATGAGACTAGGCGAGGTCGTGCTCCACAATCGCATCCAAACGGAGGAGCGTGGAGTTGACGCGGGACTGGGCGAGGTCGAGCTCGCGGACCTTGGCGCTGACGTGGTCCGCAAGGTCGCAGGTGGAGGAGACGTTGGAGAGGACGTGGTCGGCGTCGAACTTGACGATGTCGAGGACCTAGGAGGATTTCTGGAGATCGAAGAGGTGCTTGTCGAGGTCGGAGCGCTGGGAGAGAGAAGGTGGTCGAGGTTGAAATCCAAGACGAGCCAGTCAAGTCGCTTGGAGGAGGTGCTGCTGGGCCTGGAGGAGGTAATGGAACGGCGGTGCCACGACGGAGGACGGCGAAGGAGGCGGTGGGGCCTGGTTGGAAGGGTAGGTGGCGGACTAGACTTGATGGGTGGTAATGGTAGTGGTGGTGTTGCAGTTGTTGGCATTGTTGTCCATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

15.98

Weight (kDa)

4.88

Isoelectric Point (pI)

61.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 110
AasI GACNNNNNNGTC 1 cut(s) 268
Acc36I ACCTGC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 324
AccII CGCG 2 cut(s) 62, 86
AciI CCGC 6 cut(s) 62, 86, 109, 322, 352, 381
AcyI GRCGYC 1 cut(s) 153
AfeI AGCGCT 1 cut(s) 225
AfiI CCNNNNNNNGG 2 cut(s) 43, 307
AgsI TTSAA 1 cut(s) 253
AjiI CACGTC 2 cut(s) 103, 145
AjnI CCWGG 2 cut(s) 300, 360
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw21I GWGCWC 2 cut(s) 24, 84
Alw26I GTCTC 1 cut(s) 123
Aor51HI AGCGCT 1 cut(s) 225
AoxI GGCC 2 cut(s) 298, 358
ApeKI GCWGC 1 cut(s) 292
AspA2I CCTAGG 1 cut(s) 178
AspLEI GCGC 2 cut(s) 98, 226
AspS9I GGNCC 5 cut(s) 88, 106, 175, 298, 358
AvaII GGWCC 3 cut(s) 88, 106, 175
AvrII CCTAGG 1 cut(s) 178
BanI GGYRCC 1 cut(s) 324
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 24, 84
BbvI GCAGC 1 cut(s) 279
BccI CCATC 1 cut(s) 388
BceAI ACGGC 2 cut(s) 335, 356
BciT130I CCWGG 2 cut(s) 302, 362
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 3 cut(s) 8, 179, 386
BfoI RGCGCY 2 cut(s) 99, 227
BfuAI ACCTGC 1 cut(s) 110
BisI GCNGC 1 cut(s) 293
BlnI CCTAGG 1 cut(s) 178
BlsI GCNGC 1 cut(s) 294
Bme1390I CCNGG 2 cut(s) 302, 362
Bme18I GGWCC 3 cut(s) 88, 106, 175
BmgBI CACGTC 2 cut(s) 103, 145
BmgT120I GGNCC 5 cut(s) 88, 106, 175, 298, 358
BmiI GGNNCC 2 cut(s) 326, 359
BmrFI CCNGG 2 cut(s) 302, 362
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 77
BpmI CTGGAG 2 cut(s) 212, 323
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 91, 178
BsaXI ACNNNNNCTCC 4 cut(s) 117, 129, 147, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 307
Bse1I ACTGG 2 cut(s) 72, 268
BseBI CCWGG 2 cut(s) 302, 362
BseDI CCNNGG 2 cut(s) 91, 178
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 2 cut(s) 43, 307
BseNI ACTGG 2 cut(s) 72, 268
BseRI GAGGAG 4 cut(s) 59, 141, 299, 320
BseXI GCAGC 1 cut(s) 279
BseYI CCCAGC 2 cut(s) 226, 295
Bsh1236I CGCG 2 cut(s) 62, 86
BshFI GGCC 2 cut(s) 300, 360
BshNI GGYRCC 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 24, 84
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 43, 307
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 2 cut(s) 300, 360
Bsp1286I GDGCHC 2 cut(s) 24, 84
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 6 cut(s) 62, 86, 109, 322, 352, 381
BspANI GGCC 2 cut(s) 300, 360
BspFNI CGCG 2 cut(s) 62, 86
BspLI GGNNCC 2 cut(s) 326, 359
BspMI ACCTGC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 324
BsrI ACTGG 2 cut(s) 72, 268
BssECI CCNNGG 2 cut(s) 91, 178
BssMI GATC 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 91, 178
Bst2UI CCWGG 2 cut(s) 302, 362
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 84
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 2 cut(s) 62, 86
BstH2I RGCGCY 2 cut(s) 99, 227
BstHHI GCGC 2 cut(s) 98, 226
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNI CCWGG 2 cut(s) 302, 362
BstSCI CCNGG 2 cut(s) 300, 360
BstUI CGCG 2 cut(s) 62, 86
BstV1I GCAGC 1 cut(s) 279
BsuRI GGCC 2 cut(s) 300, 360
BtrI CACGTC 2 cut(s) 103, 145
BtsCI GGATG 1 cut(s) 33
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 84
CfoI GCGC 2 cut(s) 98, 226
Cfr13I GGNCC 5 cut(s) 88, 106, 175, 298, 358
CseI GACGC 2 cut(s) 68, 142
CviJI RGCY 4 cut(s) 82, 267, 300, 360
CviKI_1 RGCY 4 cut(s) 82, 267, 300, 360
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
DrdI GACNNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EciI GGCGGA 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 91, 178
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 3 cut(s) 88, 106, 175
Eco47III AGCGCT 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 82
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoO109I RGGNCCY 2 cut(s) 175, 358
EcoRII CCWGG 2 cut(s) 300, 360
EcoT14I CCWWGG 2 cut(s) 91, 178
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 2 cut(s) 91, 178
Esp3I CGTCTC 1 cut(s) 123
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FaqI GGGAC 1 cut(s) 78
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 3 cut(s) 8, 179, 386
GlaI GCGC 2 cut(s) 97, 225
GluI GCNGC 1 cut(s) 293
GsaI CCCAGC 2 cut(s) 230, 299
GsuI CTGGAG 2 cut(s) 212, 323
HaeII RGCGCY 2 cut(s) 99, 227
HaeIII GGCC 2 cut(s) 300, 360
HgaI GACGC 2 cut(s) 68, 142
HhaI GCGC 2 cut(s) 98, 226
Hin1I GRCGYC 1 cut(s) 153
Hin6I GCGC 2 cut(s) 96, 224
HinP1I GCGC 2 cut(s) 96, 224
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 2 cut(s) 158, 335
HpyAV CCTTC 3 cut(s) 231, 339, 363
HpyCH4IV ACGT 3 cut(s) 102, 132, 144
HpyCH4V TGCA 1 cut(s) 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpySE526I ACGT 3 cut(s) 102, 132, 144
Hsp92I GRCGYC 1 cut(s) 153
HspAI GCGC 2 cut(s) 96, 224
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 3 cut(s) 27, 46, 221
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 1 cut(s) 42
MaeI CTAG 3 cut(s) 8, 179, 386
MaeII ACGT 3 cut(s) 102, 132, 144
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 1 cut(s) 212
MhlI GDGCHC 2 cut(s) 24, 84
MmeI TCCRAC 3 cut(s) 115, 199, 346
MspR9I CCNGG 2 cut(s) 302, 362
MvaI CCWGG 2 cut(s) 302, 362
MvnI CGCG 2 cut(s) 62, 86
MwoI GCNNNNNNNGC 1 cut(s) 349
NdeII GATC 1 cut(s) 195
NlaIV GGNNCC 2 cut(s) 326, 359
PaqCI CACCTGC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 162
PflFI GACNNNGTC 3 cut(s) 104, 146, 167
PkrI GCNGC 1 cut(s) 294
PpuMI RGGWCCY 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 300, 360
PspFI CCCAGC 2 cut(s) 226, 295
PspGI CCWGG 2 cut(s) 300, 360
PspN4I GGNNCC 2 cut(s) 326, 359
PspPI GGNCC 5 cut(s) 88, 106, 175, 298, 358
PspPPI RGGWCCY 1 cut(s) 175
PsyI GACNNNGTC 3 cut(s) 104, 146, 167
SacI GAGCTC 1 cut(s) 84
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 5 cut(s) 88, 106, 175, 298, 358
ScrFI CCNGG 2 cut(s) 302, 362
SduI GDGCHC 2 cut(s) 24, 84
SfaNI GCATC 1 cut(s) 42
SinI GGWCC 3 cut(s) 88, 106, 175
SsiI CCGC 6 cut(s) 62, 86, 109, 322, 352, 381
SspMI CTAG 3 cut(s) 8, 179, 386
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 300, 360
StyI CCWWGG 2 cut(s) 91, 178
TaiI ACGT 3 cut(s) 105, 135, 147
TaqI TCGA 6 cut(s) 78, 156, 171, 198, 213, 245
TseI GCWGC 1 cut(s) 292
TspGWI ACGGA 2 cut(s) 56, 348
Tth111I GACNNNGTC 3 cut(s) 104, 146, 167
VpaK11BI GGWCC 3 cut(s) 88, 106, 175
XagI CCTNNNNNAGG 1 cut(s) 305
XmaJI CCTAGG 1 cut(s) 178
XspI CTAG 3 cut(s) 8, 179, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.