Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006912

Physical Location & Seq

Genomic Coordinates Forward (+)

32029233 .. 32030656

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG303000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTCGGCGAGGTTGCGGATCTTGGCGCTGACGTGGTCGACGAGGTCGGAGGTGGAGGAGACGTTGGAGAGGACGTGATCGGCGTTGGACTTGACGATGTCGAGGACCTGGGAGGATTTCTGGTGATTGGAGAGGTCGCGGATCTTGGAGCTGACGTGGTCGGCGAGGTCGCAGGTGGAGGAGACGTTGGAGAGGACGTGGTCGGCGTTGGACTTGACGATATCGAGGACCTGGGAGGATTTCTGGAGATTGGAGAGGTGTTTGTCGAGGTCGGAGCGCTGGGTGAGAGGAGGTGGTCGAGGTTGAGATCCAGGGCGAGCCGTGGACTGCGGCGGAGGAGGAGAGTCGTCGCTGACTGGGATGGAATTCTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

12.85

Weight (kDa)

4.05

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07420
rosa_laevigata	RLG00000000660 RLG00000002907 RLG00000007972 RLG00000009435
rosa_multiflora	Rmu_sc0005072.1_g000009 Rmu_sc0024469.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121510
rosa_rugosa	Rorug05G0102500 Rorug07G0132700
rosa_samantha	Rh1AG344800 Rh1BG170200 Rh1CG262000 Rh2AG051400 Rh2BG245700 Rh2DG331100 Rh3BG137600 Rh3DG139000 Rh3DG303000 Rh5AG377200 Rh5BG534400 Rh6AG001100 Rh7AG343400 Rh7BG401400 Rh7CG360900 Rh7CG470900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	140
AciI	CCGC	4 cut(s)	17, 140, 331, 334
AclWI	GGATC	3 cut(s)	27, 150, 303
AcsI	RAATTY	1 cut(s)	366
AfeI	AGCGCT	1 cut(s)	279
AjiI	CACGTC	4 cut(s)	34, 76, 157, 199
AjnI	CCWGG	3 cut(s)	108, 231, 311
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Alw26I	GTCTC	2 cut(s)	54, 177
AlwI	GGATC	3 cut(s)	27, 150, 303
Aor51HI	AGCGCT	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	29, 280
AspS9I	GGNCC	2 cut(s)	106, 229
AsuHPI	GGTGA	2 cut(s)	136, 296
AvaII	GGWCC	2 cut(s)	106, 229
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	3 cut(s)	110, 233, 313
BcoDI	GTCTC	2 cut(s)	54, 177
BfoI	RGCGCY	2 cut(s)	30, 281
BfuAI	ACCTGC	1 cut(s)	164
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
Bme1390I	CCNGG	3 cut(s)	110, 233, 313
Bme18I	GGWCC	2 cut(s)	106, 229
BmgBI	CACGTC	4 cut(s)	34, 76, 157, 199
BmgT120I	GGNCC	2 cut(s)	106, 229
BmrFI	CCNGG	3 cut(s)	110, 233, 313
BmrI	ACTGGG	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	266
BsaJI	CCNNGG	4 cut(s)	109, 232, 312, 322
Bse1I	ACTGG	1 cut(s)	362
BseBI	CCWGG	3 cut(s)	110, 233, 313
BseDI	CCNNGG	4 cut(s)	109, 232, 312, 322
BseGI	GGATG	1 cut(s)	367
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	5 cut(s)	72, 195, 304, 352, 355
BseYI	CCCAGC	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	54, 177
BsmBI	CGTCTC	2 cut(s)	54, 177
Bsp143I	GATC	4 cut(s)	19, 78, 142, 308
BspACI	CCGC	4 cut(s)	17, 140, 331, 334
BspFNI	CGCG	1 cut(s)	140
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	3 cut(s)	27, 150, 303
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	4 cut(s)	109, 232, 312, 322
BssMI	GATC	4 cut(s)	19, 78, 142, 308
Bst2UI	CCWGG	3 cut(s)	110, 233, 313
BstC8I	GCNNGC	1 cut(s)	319
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	2 cut(s)	30, 281
BstHHI	GCGC	2 cut(s)	29, 280
BstKTI	GATC	4 cut(s)	22, 81, 145, 311
BstMAI	GTCTC	2 cut(s)	54, 177
BstMBI	GATC	4 cut(s)	19, 78, 142, 308
BstNI	CCWGG	3 cut(s)	110, 233, 313
BstSCI	CCNGG	3 cut(s)	108, 231, 311
BstUI	CGCG	1 cut(s)	140
BstX2I	RGATCY	3 cut(s)	19, 142, 308
BstYI	RGATCY	3 cut(s)	19, 142, 308
BtgI	CCRYGG	1 cut(s)	322
BtrI	CACGTC	4 cut(s)	34, 76, 157, 199
BtsCI	GGATG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	319
CfoI	GCGC	2 cut(s)	29, 280
Cfr13I	GGNCC	2 cut(s)	106, 229
CviJI	RGCY	2 cut(s)	152, 321
CviKI_1	RGCY	2 cut(s)	152, 321
DpnI	GATC	4 cut(s)	21, 80, 144, 310
DpnII	GATC	4 cut(s)	19, 78, 142, 308
EciI	GGCGGA	1 cut(s)	349
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	106, 229
Eco47III	AGCGCT	1 cut(s)	279
EcoO109I	RGGNCCY	2 cut(s)	106, 229
EcoRI	GAATTC	1 cut(s)	366
EcoRII	CCWGG	3 cut(s)	108, 231, 311
EcoRV	GATATC	1 cut(s)	223
Esp3I	CGTCTC	2 cut(s)	54, 177
FaiI	YATR	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	332
GlaI	GCGC	2 cut(s)	28, 279
GluI	GCNGC	1 cut(s)	332
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	266
HaeII	RGCGCY	2 cut(s)	30, 281
HhaI	GCGC	2 cut(s)	29, 280
Hin6I	GCGC	2 cut(s)	27, 278
HinP1I	GCGC	2 cut(s)	27, 278
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	345
HphI	GGTGA	2 cut(s)	136, 296
Hpy166II	GTNNAC	2 cut(s)	40, 326
Hpy188I	TCNGA	2 cut(s)	50, 275
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	2 cut(s)	40, 326
Hpy99I	CGWCG	2 cut(s)	44, 353
HpyCH4IV	ACGT	6 cut(s)	33, 63, 75, 156, 186, 198
HpySE526I	ACGT	6 cut(s)	33, 63, 75, 156, 186, 198
HspAI	GCGC	2 cut(s)	27, 278
Kzo9I	GATC	4 cut(s)	19, 78, 142, 308
LmnI	GCTCC	2 cut(s)	149, 275
MaeII	ACGT	6 cut(s)	33, 63, 75, 156, 186, 198
MalI	GATC	4 cut(s)	21, 80, 144, 310
MboI	GATC	4 cut(s)	19, 78, 142, 308
MflI	RGATCY	3 cut(s)	19, 142, 308
MluCI	AATT	1 cut(s)	366
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	6 cut(s)	28, 46, 67, 169, 190, 253
MroXI	GAANNNNTTC	1 cut(s)	370
MspR9I	CCNGG	3 cut(s)	110, 233, 313
MvaI	CCWGG	3 cut(s)	110, 233, 313
MvnI	CGCG	1 cut(s)	140
NdeII	GATC	4 cut(s)	19, 78, 142, 308
PaqCI	CACCTGC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	4 cut(s)	39, 81, 162, 204
PdmI	GAANNNNTTC	1 cut(s)	370
PflFI	GACNNNGTC	5 cut(s)	35, 44, 98, 158, 200
PkrI	GCNGC	1 cut(s)	333
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PpuMI	RGGWCCY	2 cut(s)	106, 229
Psp5II	RGGWCCY	2 cut(s)	106, 229
Psp6I	CCWGG	3 cut(s)	108, 231, 311
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	3 cut(s)	108, 231, 311
PspPI	GGNCC	2 cut(s)	106, 229
PspPPI	RGGWCCY	2 cut(s)	106, 229
PsuI	RGATCY	3 cut(s)	19, 142, 308
PsyI	GACNNNGTC	5 cut(s)	35, 44, 98, 158, 200
SalI	GTCGAC	1 cut(s)	38
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	4 cut(s)	19, 78, 142, 308
Sau96I	GGNCC	2 cut(s)	106, 229
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	3 cut(s)	110, 233, 313
SinI	GGWCC	2 cut(s)	106, 229
Sse9I	AATT	1 cut(s)	366
SsiI	CCGC	4 cut(s)	17, 140, 331, 334
StyD4I	CCNGG	3 cut(s)	108, 231, 311
TaiI	ACGT	6 cut(s)	36, 66, 78, 159, 189, 201
TaqI	TCGA	5 cut(s)	39, 102, 225, 267, 299
TasI	AATT	1 cut(s)	366
TauI	GCSGC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	363
Tth111I	GACNNNGTC	5 cut(s)	35, 44, 98, 158, 200
VpaK11BI	GGWCC	2 cut(s)	106, 229
XapI	RAATTY	1 cut(s)	366
XmiI	GTMKAC	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.