Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006964

Physical Location & Seq

Genomic Coordinates Reverse (-)

19676466 .. 19677642

Gene Structure 1177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCTCCTCAGCTATGAGCTCCCAATCGGCATCACTCATATCGTCCGACCTGTAGGCCATGACAAAGAGCTAGAGAGACTTACCGTTTGGGAATTTTTGATTGGAGATGAAGAGCTCAGGGCTCTGCCCTCTCAAACCCCAAAGCGAAGCTCGTCTGGACTGTCTCGACATCTGTGGTATGACCTCGTTGTCAGACCTAAGGTTCGATCTCGCTGGAACAACACCGATGGTGAGCCAGAGCAACAGCAAACTAGTGGACGAGTCATCGGTGGCGGTGGCGGAGAGTGGGTGATCGTCCTGGGAAGTGAGTCCTCCCGGGCGGCGAAGTCAATACAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.66

Weight (kDa)

6.84

Isoelectric Point (pI)

70.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0137291
rosa_laevigata	RLG00000001724 RLG00000009243 RLG00000019648 RLG00000020216 RLG00000021354 RLG00000023888 RLG00000035110 RLG00000035642 RLG00000036443
rosa_multiflora	Rmu_sc0000762.1_g000066
rosa_roxburghii	Rroxscaffold_2G00080800
rosa_rugosa	Rorug02G0340800
rosa_samantha	Rh1AG052000 Rh1AG321500 Rh2AG389100 Rh2BG396900 Rh2CG340900 Rh2DG045100 Rh2DG411900 Rh4AG363900 Rh5BG170700 Rh5CG354900 Rh5CG408700 Rh5DG398700 Rh6AG362600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AciI	CCGC	3 cut(s)	273, 279, 320
AcsI	RAATTY	1 cut(s)	92
AhlI	ACTAGT	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	297
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	5 cut(s)	12, 19, 70, 115, 150
AluI	AGCT	5 cut(s)	12, 19, 70, 115, 150
Alw21I	GWGCWC	2 cut(s)	21, 117
Alw26I	GTCTC	2 cut(s)	70, 168
Ama87I	CYCGRG	1 cut(s)	315
AoxI	GGCC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	92
ArsI	GACNNNNNNTTYG	4 cut(s)	69, 101, 186, 218
AsuC2I	CCSGG	2 cut(s)	316, 317
AsuHPI	GGTGA	2 cut(s)	242, 301
AvaI	CYCGRG	1 cut(s)	315
AxyI	CCTNAGG	1 cut(s)	198
BanII	GRGCYC	3 cut(s)	21, 117, 124
Bbv12I	GWGCWC	2 cut(s)	21, 117
BbvCI	CCTCAGC	1 cut(s)	8
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	299
BcnI	CCSGG	2 cut(s)	316, 317
BcoDI	GTCTC	2 cut(s)	70, 168
BcuI	ACTAGT	1 cut(s)	251
BfaI	CTAG	2 cut(s)	71, 252
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	3 cut(s)	299, 316, 317
BmeT110I	CYCGRG	1 cut(s)	315
BmrFI	CCNGG	3 cut(s)	299, 316, 317
BmsI	GCATC	1 cut(s)	39
Bpu10I	CCTNAGC	2 cut(s)	8, 116
BpuMI	CCSGG	2 cut(s)	316, 317
BsaJI	CCNNGG	2 cut(s)	298, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bse21I	CCTNAGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	298, 315
BseMII	CTCAG	2 cut(s)	22, 130
BshFI	GGCC	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	21, 117
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	70, 168
BsnI	GGCC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	315
Bsp1286I	GDGCHC	3 cut(s)	21, 117, 124
Bsp143I	GATC	2 cut(s)	206, 291
BspACI	CCGC	3 cut(s)	273, 279, 320
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	2 cut(s)	21, 129
BspQI	GCTCTTC	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	298, 315
BssMI	GATC	2 cut(s)	206, 291
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	2 cut(s)	85, 162
Bst6I	CTCTTC	1 cut(s)	105
BstDEI	CTNAG	3 cut(s)	8, 116, 198
BstKTI	GATC	2 cut(s)	209, 294
BstMAI	GTCTC	2 cut(s)	70, 168
BstMBI	GATC	2 cut(s)	206, 291
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	3 cut(s)	297, 314, 315
BstSFI	CTRYAG	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	57
Cfr9I	CCCGGG	1 cut(s)	315
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	8 cut(s)	12, 19, 57, 70, 115, 122, 150, 235
CviKI_1	RGCY	8 cut(s)	12, 19, 57, 70, 115, 122, 150, 235
DdeI	CTNAG	3 cut(s)	8, 116, 198
DpnI	GATC	2 cut(s)	208, 293
DpnII	GATC	2 cut(s)	206, 291
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	294
Ecl136II	GAGCTC	2 cut(s)	19, 115
Eco24I	GRGCYC	3 cut(s)	21, 117, 124
Eco53kI	GAGCTC	2 cut(s)	19, 115
Eco81I	CCTNAGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	315
EcoICRI	GAGCTC	2 cut(s)	19, 115
EcoRII	CCWGG	1 cut(s)	297
EcoT38I	GRGCYC	3 cut(s)	21, 117, 124
FaeI	CATG	1 cut(s)	62
FaiI	YATR	4 cut(s)	15, 39, 60, 180
FatI	CATG	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	321
FriOI	GRGCYC	3 cut(s)	21, 117, 124
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	2 cut(s)	71, 252
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	316
Hin1II	CATG	1 cut(s)	62
HinfI	GANTC	2 cut(s)	261, 308
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	2 cut(s)	242, 301
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	47, 194
Hpy188III	TCNNGA	2 cut(s)	156, 165
Hpy8I	GTNNAC	1 cut(s)	257
HpyCH4III	ACNGT	2 cut(s)	85, 162
HpyF3I	CTNAG	3 cut(s)	8, 116, 198
Hsp92II	CATG	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	206, 291
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	9, 24
LpnPI	CCDG	8 cut(s)	63, 103, 141, 199, 249, 284, 311, 329
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	2 cut(s)	71, 252
MalI	GATC	2 cut(s)	208, 293
MboI	GATC	2 cut(s)	206, 291
MboII	GAAGA	1 cut(s)	122
MhlI	GDGCHC	3 cut(s)	21, 117, 124
MluCI	AATT	1 cut(s)	92
MlyI	GAGTC	2 cut(s)	270, 317
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	17, 139, 194, 322
MspI	CCGG	1 cut(s)	316
MspR9I	CCNGG	3 cut(s)	299, 316, 317
MvaI	CCWGG	1 cut(s)	299
NciI	CCSGG	2 cut(s)	316, 317
NdeII	GATC	2 cut(s)	206, 291
NlaIII	CATG	1 cut(s)	62
PciSI	GCTCTTC	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	2 cut(s)	269, 316
PpsI	GAGTC	2 cut(s)	269, 316
Psp124BI	GAGCTC	2 cut(s)	21, 117
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
SacI	GAGCTC	2 cut(s)	21, 117
SapI	GCTCTTC	1 cut(s)	105
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	2 cut(s)	206, 291
SchI	GAGTC	2 cut(s)	270, 317
ScrFI	CCNGG	3 cut(s)	299, 316, 317
SduI	GDGCHC	3 cut(s)	21, 117, 124
SetI	ASST	9 cut(s)	14, 21, 52, 72, 117, 152, 186, 199, 204
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	51
SmaI	CCCGGG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	251
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	3 cut(s)	273, 279, 320
SspMI	CTAG	2 cut(s)	71, 252
SstI	GAGCTC	2 cut(s)	21, 117
StyD4I	CCNGG	3 cut(s)	297, 314, 315
TaaI	ACNGT	2 cut(s)	85, 162
TaqI	TCGA	2 cut(s)	166, 205
TasI	AATT	1 cut(s)	92
TauI	GCSGC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	123
TspMI	CCCGGG	1 cut(s)	315
XapI	RAATTY	1 cut(s)	92
XmaI	CCCGGG	1 cut(s)	315
XspI	CTAG	2 cut(s)	71, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.