RLG00000023888

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006964
Physical Location & Seq
Reverse (-)
29601736 .. 29603174
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023888

Sequence Viewer

Length: 771 bp
ATGCTCCTCAGCTATGAGCTCCCAATCGGCATCACTCATATCGTCCGACCTGTAGGCCATGACGAAGAGCCAGAGAGACTTTCTGGTTGGGGATTTTCGATTGGAGATGAAGAGGCCGCGGGCCTTGTTGTCGTCGCCGGAGAATCAGTGCTCGTTCAGGGTCTGATACAGTCGCGCCTTGCCTTTAGGTCGTCGTCGGCGAGCAACGGCATCAAAGGTGAAGATGGTGGTGCAAGATCTGATAGCGCCGTGCTGGTACTCGGGGGAATCAAAGGCGGAGACAACGACGTGAAGGCGGTGGAACTCGAATTGGAGCAGCAGAGAAATAGAAGAGGAGCTTTCTCGTTGAAATTGGCGAGGAGCCTGACCTGCCGCCTCGTCCAAACGGCGTCACCGACGTCTTCACCGTCGGAGAAGAGCAAGGAGAGGAAGCCTCAACACAACAACAGCTCTGACATCATCCCTCTCGACGTCGACTCCGCCAGCATCGACACCACCACTCGACACGCGCCTCCAGCCGATAACTTTGACAGCACTATCAACCACGACAACGTCGCAAACGCCGCGCTGTCATCTAGCATTAGAACCACCTTGCTAGCTTCCCCACCCAAAATAAATCCTGAGTGCGAAACTAGAAGACCGTCACCACCACCAATACCAGTTGCTCGACCTATCGCTGATAGAGCCGTCATCGCCAGTCCGCCACTAATTGGATCGAGATCCTCGGCCACCAGAGATGGCCAGAGAAAGACCCACTCCCTTAGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

27.16

Weight (kDa)

7.03

Isoelectric Point (pI)

59.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 401, 474
Acc36I ACCTGC 1 cut(s) 377
AccB7I CCANNNNNTGG 1 cut(s) 710
AccI GTMKAC 1 cut(s) 474
AccII CGCG 4 cut(s) 119, 175, 509, 566
AciI CCGC 8 cut(s) 117, 119, 276, 296, 373, 480, 564, 701
AclWI GGATC 2 cut(s) 714, 721
AcoI YGGCCR 2 cut(s) 726, 739
AcyI GRCGYC 3 cut(s) 389, 398, 471
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 710
AgsI TTSAA 1 cut(s) 349
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 5 cut(s) 12, 19, 338, 450, 599
AluI AGCT 5 cut(s) 12, 19, 338, 450, 599
Alw21I GWGCWC 2 cut(s) 21, 153
Alw26I GTCTC 2 cut(s) 70, 273
AlwI GGATC 2 cut(s) 714, 721
AlwNI CAGNNNCTG 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 5 cut(s) 55, 114, 121, 726, 739
ApeKI GCWGC 1 cut(s) 316
AspLEI GCGC 4 cut(s) 177, 248, 511, 568
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 4 cut(s) 230, 384, 396, 636
AsuNHI GCTAGC 1 cut(s) 595
AvaI CYCGRG 1 cut(s) 260
BalI TGGCCA 1 cut(s) 741
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 2 cut(s) 393, 643
Bbv12I GWGCWC 2 cut(s) 21, 153
BbvCI CCTCAGC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 328
BccI CCATC 2 cut(s) 218, 731
BceAI ACGGC 4 cut(s) 223, 233, 402, 671
BcoDI GTCTC 2 cut(s) 70, 273
BfaI CTAG 3 cut(s) 576, 596, 633
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 377
BglII AGATCT 1 cut(s) 236
BisI GCNGC 4 cut(s) 117, 317, 373, 564
BlsI GCNGC 4 cut(s) 118, 318, 374, 565
BmeT110I CYCGRG 1 cut(s) 260
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 362
BmsI GCATC 3 cut(s) 39, 219, 495
BmtI GCTAGC 1 cut(s) 599
BpiI GAAGAC 2 cut(s) 393, 643
BplI GAGNNNNNCTC 2 cut(s) 418, 450
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 718
BsaHI GRCGYC 3 cut(s) 389, 398, 471
BsaJI CCNNGG 2 cut(s) 117, 723
BsaXI ACNNNNNCTCC 4 cut(s) 132, 162, 461, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 710
Bse1I ACTGG 2 cut(s) 659, 696
Bse8I GATNNNNATC 1 cut(s) 718
BseDI CCNNGG 2 cut(s) 117, 723
BseGI GGATG 1 cut(s) 459
BseJI GATNNNNATC 1 cut(s) 718
BseLI CCNNNNNNNGG 1 cut(s) 710
BseMII CTCAG 2 cut(s) 22, 612
BseNI ACTGG 2 cut(s) 659, 696
BseRI GAGGAG 2 cut(s) 348, 373
BseXI GCAGC 1 cut(s) 328
Bsh1236I CGCG 4 cut(s) 119, 175, 509, 566
BshFI GGCC 5 cut(s) 57, 116, 123, 728, 741
BsiHKAI GWGCWC 2 cut(s) 21, 153
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 710
BsmAI GTCTC 2 cut(s) 70, 273
BsnI GGCC 5 cut(s) 57, 116, 123, 728, 741
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 21, 153
Bsp143I GATC 3 cut(s) 236, 713, 719
BspACI CCGC 8 cut(s) 117, 119, 276, 296, 373, 480, 564, 701
BspANI GGCC 5 cut(s) 57, 116, 123, 728, 741
BspCNI CTCAG 2 cut(s) 21, 613
BspFNI CGCG 4 cut(s) 119, 175, 509, 566
BspLI GGNNCC 1 cut(s) 362
BspMI ACCTGC 1 cut(s) 377
BspOI GCTAGC 1 cut(s) 599
BspPI GGATC 2 cut(s) 714, 721
BspQI GCTCTTC 2 cut(s) 60, 410
BsrI ACTGG 2 cut(s) 659, 696
BssECI CCNNGG 2 cut(s) 117, 723
BssMI GATC 3 cut(s) 236, 713, 719
BssNI GRCGYC 3 cut(s) 389, 398, 471
Bst4CI ACNGT 3 cut(s) 171, 408, 642
Bst6I CTCTTC 4 cut(s) 60, 105, 325, 410
BstACI GRCGYC 3 cut(s) 389, 398, 471
BstC8I GCNNGC 4 cut(s) 121, 202, 484, 597
BstDEI CTNAG 3 cut(s) 8, 621, 761
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 459
BstFNI CGCG 4 cut(s) 119, 175, 509, 566
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 4 cut(s) 177, 248, 511, 568
BstKTI GATC 3 cut(s) 239, 716, 722
BstMAI GTCTC 2 cut(s) 70, 273
BstMBI GATC 3 cut(s) 236, 713, 719
BstMWI GCNNNNNNNGC 5 cut(s) 369, 515, 563, 683, 692
BstSFI CTRYAG 1 cut(s) 51
BstUI CGCG 4 cut(s) 119, 175, 509, 566
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 2 cut(s) 393, 643
BstX2I RGATCY 2 cut(s) 236, 719
BstYI RGATCY 2 cut(s) 236, 719
BsuRI GGCC 5 cut(s) 57, 116, 123, 728, 741
BtgI CCRYGG 1 cut(s) 117
BtgZI GCGATG 1 cut(s) 676
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 4 cut(s) 121, 202, 484, 597
CaiI CAGNNNCTG 1 cut(s) 163
CfoI GCGC 4 cut(s) 177, 248, 511, 568
Cfr13I GGNCC 1 cut(s) 121
Cfr42I CCGCGG 1 cut(s) 120
CseI GACGC 1 cut(s) 378
Csp6I GTAC 1 cut(s) 257
CviAII CATG 1 cut(s) 59
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 3 cut(s) 8, 621, 761
DpnI GATC 3 cut(s) 238, 715, 721
DpnII GATC 3 cut(s) 236, 713, 719
EaeI YGGCCR 2 cut(s) 726, 739
Eam1104I CTCTTC 4 cut(s) 60, 105, 325, 410
EarI CTCTTC 4 cut(s) 60, 105, 325, 410
EciI GGCGGA 3 cut(s) 291, 469, 690
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 1 cut(s) 62
FaiI YATR 3 cut(s) 15, 39, 60
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FatI CATG 1 cut(s) 58
FauI CCCGC 1 cut(s) 112
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 4 cut(s) 117, 317, 373, 564
FokI GGATG 1 cut(s) 446
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 4 cut(s) 117, 317, 373, 564
FspBI CTAG 3 cut(s) 576, 596, 633
GlaI GCGC 4 cut(s) 176, 247, 510, 567
GluI GCNGC 4 cut(s) 117, 317, 373, 564
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 5 cut(s) 57, 116, 123, 728, 741
HapII CCGG 1 cut(s) 138
HgaI GACGC 1 cut(s) 378
HhaI GCGC 4 cut(s) 177, 248, 511, 568
Hin1I GRCGYC 3 cut(s) 389, 398, 471
Hin1II CATG 1 cut(s) 62
Hin6I GCGC 4 cut(s) 175, 246, 509, 566
HinP1I GCGC 4 cut(s) 175, 246, 509, 566
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HinfI GANTC 3 cut(s) 143, 267, 476
HpaII CCGG 1 cut(s) 138
HphI GGTGA 4 cut(s) 230, 384, 396, 636
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 5 cut(s) 47, 165, 241, 412, 454
Hpy188III TCNNGA 3 cut(s) 467, 620, 717
Hpy8I GTNNAC 1 cut(s) 475
Hpy99I CGWCG 9 cut(s) 137, 196, 199, 290, 400, 412, 473, 476, 557
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 3 cut(s) 171, 408, 642
HpyCH4IV ACGT 4 cut(s) 288, 398, 471, 552
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 5 cut(s) 369, 515, 563, 683, 692
HpyF3I CTNAG 3 cut(s) 8, 621, 761
HpySE526I ACGT 4 cut(s) 288, 398, 471, 552
Hsp92I GRCGYC 3 cut(s) 389, 398, 471
Hsp92II CATG 1 cut(s) 62
HspAI GCGC 4 cut(s) 175, 246, 509, 566
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 3 cut(s) 236, 713, 719
LguI GCTCTTC 2 cut(s) 60, 410
LmnI GCTCC 5 cut(s) 9, 24, 313, 335, 360
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 3 cut(s) 39, 219, 495
MaeI CTAG 3 cut(s) 576, 596, 633
MaeII ACGT 4 cut(s) 288, 398, 471, 552
MaeIII GTNAC 2 cut(s) 390, 642
MalI GATC 3 cut(s) 238, 715, 721
MboI GATC 3 cut(s) 236, 713, 719
MboII GAAGA 7 cut(s) 77, 122, 233, 342, 393, 427, 648
MflI RGATCY 2 cut(s) 236, 719
MhlI GDGCHC 2 cut(s) 21, 153
MlsI TGGCCA 1 cut(s) 741
MluCI AATT 3 cut(s) 308, 350, 708
MluNI TGGCCA 1 cut(s) 741
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 2 cut(s) 70, 390
Mox20I TGGCCA 1 cut(s) 741
MscI TGGCCA 1 cut(s) 741
Msp20I TGGCCA 1 cut(s) 741
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 138
MvnI CGCG 4 cut(s) 119, 175, 509, 566
MwoI GCNNNNNNNGC 5 cut(s) 369, 515, 563, 683, 692
NdeII GATC 3 cut(s) 236, 713, 719
NheI GCTAGC 1 cut(s) 595
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 362
NmeAIII GCCGAG 1 cut(s) 704
NmuCI GTSAC 2 cut(s) 390, 642
PciSI GCTCTTC 2 cut(s) 60, 410
PcsI WCGNNNNNNNCGW 3 cut(s) 197, 392, 404
PfeI GAWTC 2 cut(s) 143, 267
PflFI GACNNNGTC 1 cut(s) 551
PflMI CCANNNNNTGG 1 cut(s) 710
PkrI GCNGC 4 cut(s) 118, 318, 374, 565
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
Psp124BI GAGCTC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 362
PspPI GGNCC 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 163
PsuI RGATCY 2 cut(s) 236, 719
PsyI GACNNNGTC 1 cut(s) 551
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SacI GAGCTC 1 cut(s) 21
SacII CCGCGG 1 cut(s) 120
SalI GTCGAC 1 cut(s) 473
SapI GCTCTTC 2 cut(s) 60, 410
SatI GCNGC 4 cut(s) 117, 317, 373, 564
Sau3AI GATC 3 cut(s) 236, 713, 719
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 470
SduI GDGCHC 2 cut(s) 21, 153
SfaNI GCATC 3 cut(s) 39, 219, 495
SfcI CTRYAG 1 cut(s) 51
Sfr303I CCGCGG 1 cut(s) 120
SgrBI CCGCGG 1 cut(s) 120
Sse9I AATT 3 cut(s) 308, 350, 708
SsiI CCGC 8 cut(s) 117, 119, 276, 296, 373, 480, 564, 701
SspMI CTAG 3 cut(s) 576, 596, 633
SstI GAGCTC 1 cut(s) 21
TaaI ACNGT 3 cut(s) 171, 408, 642
TaiI ACGT 4 cut(s) 291, 401, 474, 555
TaqI TCGA 8 cut(s) 98, 306, 468, 474, 489, 502, 667, 716
TasI AATT 3 cut(s) 308, 350, 708
TauI GCSGC 3 cut(s) 119, 375, 566
TfiI GAWTC 2 cut(s) 143, 267
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 2 cut(s) 390, 642
TseI GCWGC 1 cut(s) 316
Tsp45I GTSAC 2 cut(s) 390, 642
TspDTI ATGAA 1 cut(s) 123
TspRI CASTG 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 551
Van91I CCANNNNNTGG 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 3 cut(s) 576, 596, 633
ZraI GACGTC 2 cut(s) 399, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.