Rh5DG398700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006964
Physical Location & Seq
Reverse (-)
62864781 .. 62864942
162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG398700.1

Sequence Viewer

Length: 162 bp
ATGGCTGCAGTGGAGGGCCTCGTCGAAGAGCCGGAGACCATGATGACTTTGTTGTGTAGATCGCGCCATGTCTCCAAGTCGTCACCGGCAATTGTGAGATATGCAGCGGCATCGGTTTGTCAGTCACGCCTTGCCTCTAGGTCGTCGCCGGCGAGCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.61

Weight (kDa)

8.88

Isoelectric Point (pI)

98.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 64
AciI CCGC 1 cut(s) 107
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 2 cut(s) 29, 76
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 5, 104
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 75
BanII GRGCYC 1 cut(s) 158
BauI CACGAG 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BcoDI GTCTC 2 cut(s) 29, 76
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 3 cut(s) 6, 105, 108
BlsI GCNGC 3 cut(s) 7, 106, 109
BmgT120I GGNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 29
Bse118I RCCGGY 2 cut(s) 85, 148
BseXI GCAGC 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 3 cut(s) 32, 86, 149
BsmAI GTCTC 2 cut(s) 29, 76
BsnI GGCC 1 cut(s) 18
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 59
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 18
BspFNI CGCG 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 10
BspQI GCTCTTC 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 29
BsrFI RCCGGY 2 cut(s) 85, 148
BssAI RCCGGY 2 cut(s) 85, 148
BssMI GATC 1 cut(s) 59
BssSI CACGAG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 150, 154
BstFNI CGCG 1 cut(s) 64
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 1 cut(s) 62
BstMAI GTCTC 2 cut(s) 29, 76
BstMBI GATC 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 116
BsuRI GGCC 1 cut(s) 18
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 150, 154
CfoI GCGC 1 cut(s) 66
Cfr10I RCCGGY 2 cut(s) 85, 148
Cfr13I GGNCC 1 cut(s) 16
CviAII CATG 2 cut(s) 40, 68
CviJI RGCY 4 cut(s) 5, 18, 31, 156
CviKI_1 RGCY 4 cut(s) 5, 18, 31, 156
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 29
Eco53kI GAGCTC 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 158
FaeI CATG 2 cut(s) 43, 71
FaiI YATR 3 cut(s) 41, 69, 102
FatI CATG 2 cut(s) 39, 67
Fnu4HI GCNGC 3 cut(s) 6, 105, 108
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 3 cut(s) 6, 105, 108
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 65
GluI GCNGC 3 cut(s) 6, 105, 108
HaeIII GGCC 1 cut(s) 18
HapII CCGG 3 cut(s) 32, 86, 149
HhaI GCGC 1 cut(s) 66
Hin1II CATG 2 cut(s) 43, 71
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HpaII CCGG 3 cut(s) 32, 86, 149
HphI GGTGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 159
Hpy99I CGWCG 2 cut(s) 26, 148
HpyCH4V TGCA 2 cut(s) 8, 104
Hsp92II CATG 2 cut(s) 43, 71
HspAI GCGC 1 cut(s) 64
KroI GCCGGC 1 cut(s) 148
KroNI GCCGGC 1 cut(s) 150
Kzo9I GATC 1 cut(s) 59
LguI GCTCTTC 1 cut(s) 21
LpnPI CCDG 2 cut(s) 45, 99
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 81, 123
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MboII GAAGA 1 cut(s) 38
MfeI CAATTG 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 90
MnlI CCTC 3 cut(s) 7, 29, 145
MreI CGCCGGCG 1 cut(s) 148
MroNI GCCGGC 1 cut(s) 148
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 3 cut(s) 32, 86, 149
MunI CAATTG 1 cut(s) 90
MvnI CGCG 1 cut(s) 64
NaeI GCCGGC 1 cut(s) 150
NdeII GATC 1 cut(s) 59
NgoMIV GCCGGC 1 cut(s) 148
NlaIII CATG 2 cut(s) 43, 71
NmuCI GTSAC 2 cut(s) 81, 123
PciSI GCTCTTC 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 150
PkrI GCNGC 3 cut(s) 7, 106, 109
Psp124BI GAGCTC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 16
PstI CTGCAG 1 cut(s) 10
SacI GAGCTC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 21
SatI GCNGC 3 cut(s) 6, 105, 108
Sau3AI GATC 1 cut(s) 59
Sau96I GGNCC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 158
SetI ASST 2 cut(s) 143, 158
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 1 cut(s) 6
SgrAI CRCCGGYG 1 cut(s) 148
Sse9I AATT 1 cut(s) 90
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 158
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 90
TauI GCSGC 1 cut(s) 110
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 2 cut(s) 81, 123
TseI GCWGC 2 cut(s) 5, 104
Tsp45I GTSAC 2 cut(s) 81, 123
TspRI CASTG 1 cut(s) 15
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.