Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006964

Physical Location & Seq

Genomic Coordinates Reverse (-)

54872533 .. 54877112

Gene Structure 4580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG408700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCTGCGGTTGAGGGCCTCGTCAAAGAGCCGGAGACCATGATGACTTTGTTGTGTAGATCGCACCATGTCTCCAAGTCGTCACCGGCAATTGTGAGGTATGCAACGGCATCAGTTTATCAGTCGCACCTTGCCTCTAGGTCGTCGCCGGTGAGCTCGTGGGCAACAGATCTGCCCAATATTTCCAAACCCAAAATACCCAAATCATTAAATCCAATCTCGTTGAAGTCACAATTAAGTTCGTTGAGTTCTTTAAGTTTGAAGCTGAAAAATGGGTTTATGGGCAACTGCGCGGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003866 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

100

Amino Acids

10.71

Weight (kDa)

9.7

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0137291
rosa_laevigata	RLG00000001724 RLG00000009243 RLG00000019648 RLG00000020216 RLG00000021354 RLG00000023888 RLG00000035110 RLG00000035642 RLG00000036443
rosa_multiflora	Rmu_sc0000762.1_g000066
rosa_roxburghii	Rroxscaffold_2G00080800
rosa_rugosa	Rorug02G0340800
rosa_samantha	Rh1AG052000 Rh1AG321500 Rh2AG389100 Rh2BG396900 Rh2CG340900 Rh2DG045100 Rh2DG411900 Rh4AG363900 Rh5BG170700 Rh5CG354900 Rh5CG408700 Rh5DG398700 Rh6AG362600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	293
AciI	CCGC	2 cut(s)	8, 293
AgsI	TTSAA	2 cut(s)	226, 262
AluBI	AGCT	2 cut(s)	156, 265
AluI	AGCT	2 cut(s)	156, 265
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	2 cut(s)	29, 76
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	75, 163
BanII	GRGCYC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	29, 76
BfaI	CTAG	1 cut(s)	138
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	16
BmsI	GCATC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse118I	RCCGGY	2 cut(s)	85, 148
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	3 cut(s)	32, 86, 149
BsmAI	GTCTC	2 cut(s)	29, 76
BsnI	GGCC	1 cut(s)	18
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	59, 169
BspACI	CCGC	2 cut(s)	8, 293
BspANI	GGCC	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	29
BsrFI	RCCGGY	2 cut(s)	85, 148
BssAI	RCCGGY	2 cut(s)	85, 148
BssMI	GATC	2 cut(s)	59, 169
BssSI	CACGAG	1 cut(s)	157
Bst2BI	CACGAG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	2 cut(s)	62, 172
BstMAI	GTCTC	2 cut(s)	29, 76
BstMBI	GATC	2 cut(s)	59, 169
BstUI	CGCG	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	18
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	2 cut(s)	85, 148
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	2 cut(s)	40, 68
CviJI	RGCY	5 cut(s)	5, 18, 31, 156, 265
CviKI_1	RGCY	5 cut(s)	5, 18, 31, 156, 265
DpnI	GATC	2 cut(s)	61, 171
DpnII	GATC	2 cut(s)	59, 169
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	2 cut(s)	43, 71
FaiI	YATR	4 cut(s)	41, 69, 102, 281
FatI	CATG	2 cut(s)	39, 67
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	3 cut(s)	32, 86, 149
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	2 cut(s)	43, 71
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HpaII	CCGG	3 cut(s)	32, 86, 149
HphI	GGTGA	2 cut(s)	75, 163
Hpy99I	CGWCG	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	43, 71
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	59, 169
LpnPI	CCDG	3 cut(s)	45, 99, 162
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	81, 228
MalI	GATC	2 cut(s)	61, 171
MboI	GATC	2 cut(s)	59, 169
MfeI	CAATTG	1 cut(s)	90
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	2 cut(s)	90, 233
MnlI	CCTC	4 cut(s)	7, 29, 90, 145
MseI	TTAA	4 cut(s)	209, 236, 254, 301
MspI	CCGG	3 cut(s)	32, 86, 149
MunI	CAATTG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	293
NdeII	GATC	2 cut(s)	59, 169
NlaIII	CATG	2 cut(s)	43, 71
NmuCI	GTSAC	2 cut(s)	81, 228
PkrI	GCNGC	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	169
SacI	GAGCTC	1 cut(s)	158
SaqAI	TTAA	4 cut(s)	209, 236, 254, 301
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	59, 169
Sau96I	GGNCC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	5 cut(s)	101, 132, 143, 158, 267
SfaNI	GCATC	1 cut(s)	119
SgrAI	CRCCGGYG	1 cut(s)	148
Sse9I	AATT	2 cut(s)	90, 233
SsiI	CCGC	2 cut(s)	8, 293
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	158
TasI	AATT	2 cut(s)	90, 233
Tru1I	TTAA	4 cut(s)	209, 236, 254, 301
Tru9I	TTAA	4 cut(s)	209, 236, 254, 301
TseFI	GTSAC	2 cut(s)	81, 228
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	81, 228
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.