Rroxscaffold_2G00080800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006964
Physical Location & Seq
Forward (+)
3735610 .. 3738731
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080800.1

Sequence Viewer

Length: 507 bp
ATGGCGGCGGTGGACGGCCTCGTCGAAGAGTCGGAGACCATGACGACTTTGTTGTGTAGATCGCGCCATGTCTCCAAGTCGTCCACCGGTGATTGTGAGGCATGCAACGTCATCGGCCAGGAGGGACCAAGCAATGATCGCAGCCCAAAGTCACTGCAGCACAAGCCATCCAGCCACCACTCTTGCATCTCCCAAACCGCCGCGCCGCCGCCACCTCCAGATCTCGCCCATCGTCAAAACCCCATCGCCGATAGAGCACTAGTAGAGAACAACTCCCACCACCAAACCCTCCAACCTCGAGAGGTCAAAACGGACGAGATACCCCTGCTACCCTCTGCCGCACAACTCGTATTCACTCCACCACCACTTTCCACCAGATTCGTGACAAGATTAGATTTGATCCGGCCACGAACCCACAATCCGGATGGAGCCCAAACCCTGCCACCGCAGCCGGTCACCACCATCAGCCACAACCCCGCTGTCTGTGCCTACACCACCATCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.18

Weight (kDa)

6.48

Isoelectric Point (pI)

57.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AccII CGCG 2 cut(s) 64, 203
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 9 cut(s) 5, 8, 198, 201, 206, 209, 339, 446, 477
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 2 cut(s) 115, 404
AfiI CCNNNNNNNGG 1 cut(s) 421
AgeI ACCGGT 1 cut(s) 86
AhlI ACTAGT 1 cut(s) 259
AjnI CCWGG 1 cut(s) 117
AloI GAACNNNNNNTCC 2 cut(s) 403, 435
AluBI AGCT 1 cut(s) 504
AluI AGCT 1 cut(s) 504
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 2 cut(s) 29, 76
AlwI GGATC 1 cut(s) 394
Ama87I CYCGRG 1 cut(s) 297
Aor13HI TCCGGA 1 cut(s) 421
AoxI GGCC 3 cut(s) 16, 115, 404
ApeKI GCWGC 3 cut(s) 141, 157, 448
AsiGI ACCGGT 1 cut(s) 86
AspLEI GCGC 2 cut(s) 66, 205
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 101, 448
AvaI CYCGRG 1 cut(s) 297
AvaII GGWCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 433
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 153, 169, 460
BccI CCATC 6 cut(s) 175, 237, 251, 419, 470, 506
BceAI ACGGC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 29, 76
BcuI ACTAGT 1 cut(s) 259
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 155
BglII AGATCT 1 cut(s) 220
BisI GCNGC 8 cut(s) 6, 142, 158, 201, 206, 209, 339, 449
BlsI GCNGC 8 cut(s) 7, 143, 159, 202, 207, 210, 340, 450
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 126, 430
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 195
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpmI CTGGAG 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 29
BsaWI WCCGGW 2 cut(s) 86, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse118I RCCGGY 2 cut(s) 86, 451
Bse3DI GCAATG 1 cut(s) 139
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 1 cut(s) 119
BseGI GGATG 2 cut(s) 167, 430
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 139
BseXI GCAGC 3 cut(s) 153, 169, 460
Bsh1236I CGCG 2 cut(s) 64, 203
BshFI GGCC 3 cut(s) 18, 117, 406
BshTI ACCGGT 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 4 cut(s) 87, 403, 422, 452
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 2 cut(s) 29, 76
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 3 cut(s) 18, 117, 406
Bso31I GGTCTC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 259, 433
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 4 cut(s) 59, 136, 220, 399
BspACI CCGC 9 cut(s) 5, 8, 198, 201, 206, 209, 339, 446, 477
BspANI GGCC 3 cut(s) 18, 117, 406
BspEI TCCGGA 1 cut(s) 421
BspFNI CGCG 2 cut(s) 64, 203
BspLI GGNNCC 2 cut(s) 126, 430
BspMAI CTGCAG 1 cut(s) 159
BspPI GGATC 1 cut(s) 394
BspTNI GGTCTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 86, 451
BssAI RCCGGY 2 cut(s) 86, 451
BssMI GATC 4 cut(s) 59, 136, 220, 399
Bst2UI CCWGG 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 103
BstEII GGTNACC 1 cut(s) 454
BstF5I GGATG 2 cut(s) 167, 430
BstFNI CGCG 2 cut(s) 64, 203
BstHHI GCGC 2 cut(s) 66, 205
BstKTI GATC 4 cut(s) 62, 139, 223, 402
BstMAI GTCTC 2 cut(s) 29, 76
BstMBI GATC 4 cut(s) 59, 136, 220, 399
BstMWI GCNNNNNNNGC 5 cut(s) 138, 163, 254, 448, 485
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 105
BstPI GGTNACC 1 cut(s) 454
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 155
BstUI CGCG 2 cut(s) 64, 203
BstV1I GCAGC 3 cut(s) 153, 169, 460
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 3 cut(s) 18, 117, 406
BtgZI GCGATG 1 cut(s) 229
BtsCI GGATG 2 cut(s) 167, 430
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 2 cut(s) 66, 205
Cfr10I RCCGGY 2 cut(s) 86, 451
Cfr13I GGNCC 1 cut(s) 125
CspAI ACCGGT 1 cut(s) 86
CspCI CAANNNNNGTGG 2 cut(s) 164, 199
CviAII CATG 3 cut(s) 40, 68, 102
DpnI GATC 4 cut(s) 61, 138, 222, 401
DpnII GATC 4 cut(s) 59, 136, 220, 399
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
EaeI YGGCCR 2 cut(s) 115, 404
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 454
EcoO65I GGTNACC 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 433
FaeI CATG 3 cut(s) 43, 71, 105
FaiI YATR 3 cut(s) 41, 69, 103
FaqI GGGAC 1 cut(s) 138
FatI CATG 3 cut(s) 39, 67, 101
FauI CCCGC 1 cut(s) 484
Fnu4HI GCNGC 8 cut(s) 6, 142, 158, 201, 206, 209, 339, 449
FokI GGATG 2 cut(s) 154, 437
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 8 cut(s) 6, 142, 158, 201, 206, 209, 339, 449
FspBI CTAG 1 cut(s) 260
GlaI GCGC 2 cut(s) 65, 204
GluI GCNGC 8 cut(s) 6, 142, 158, 201, 206, 209, 339, 449
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 3 cut(s) 18, 117, 406
HapII CCGG 4 cut(s) 87, 403, 422, 452
HhaI GCGC 2 cut(s) 66, 205
Hin1II CATG 3 cut(s) 43, 71, 105
Hin6I GCGC 2 cut(s) 64, 203
HinP1I GCGC 2 cut(s) 64, 203
HinfI GANTC 2 cut(s) 29, 378
HpaII CCGG 4 cut(s) 87, 403, 422, 452
HphI GGTGA 2 cut(s) 101, 448
Hpy166II GTNNAC 2 cut(s) 13, 84
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 4 cut(s) 218, 299, 382, 422
Hpy8I GTNNAC 2 cut(s) 13, 84
Hpy99I CGWCG 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 105, 157, 186
HpyF10VI GCNNNNNNNGC 5 cut(s) 138, 163, 254, 448, 485
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 3 cut(s) 43, 71, 105
HspAI GCGC 2 cut(s) 64, 203
Kpn2I TCCGGA 1 cut(s) 421
Kzo9I GATC 4 cut(s) 59, 136, 220, 399
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 3 cut(s) 153, 169, 460
LweI GCATC 1 cut(s) 195
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 3 cut(s) 150, 382, 454
MalI GATC 4 cut(s) 61, 138, 222, 401
MboI GATC 4 cut(s) 59, 136, 220, 399
MboII GAAGA 1 cut(s) 38
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 259, 433
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 2 cut(s) 12, 316
MnlI CCTC 8 cut(s) 29, 91, 115, 225, 295, 299, 306, 343
MroI TCCGGA 1 cut(s) 421
MspA1I CMGCKG 2 cut(s) 479, 504
MspI CCGG 4 cut(s) 87, 403, 422, 452
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 2 cut(s) 64, 203
MwoI GCNNNNNNNGC 5 cut(s) 138, 163, 254, 448, 485
NdeII GATC 4 cut(s) 59, 136, 220, 399
NlaIII CATG 3 cut(s) 43, 71, 105
NlaIV GGNNCC 2 cut(s) 126, 430
NmuCI GTSAC 3 cut(s) 150, 382, 454
NspI RCATGY 1 cut(s) 105
PaeI GCATGC 1 cut(s) 105
PaeR7I CTCGAG 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PfeI GAWTC 1 cut(s) 378
PinAI ACCGGT 1 cut(s) 86
PkrI GCNGC 8 cut(s) 7, 143, 159, 202, 207, 210, 340, 450
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 454
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 126, 430
PspPI GGNCC 1 cut(s) 125
PstI CTGCAG 1 cut(s) 159
PsuI RGATCY 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 504
SatI GCNGC 8 cut(s) 6, 142, 158, 201, 206, 209, 339, 449
Sau3AI GATC 4 cut(s) 59, 136, 220, 399
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 2 cut(s) 259, 433
SetI ASST 5 cut(s) 111, 217, 298, 306, 506
SfaNI GCATC 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 155
Sfr274I CTCGAG 1 cut(s) 297
SgrAI CRCCGGYG 1 cut(s) 86
SinI GGWCC 1 cut(s) 125
SlaI CTCGAG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
SpeI ACTAGT 1 cut(s) 259
SphI GCATGC 1 cut(s) 105
SsiI CCGC 9 cut(s) 5, 8, 198, 201, 206, 209, 339, 446, 477
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 117
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 24, 298
TauI GCSGC 5 cut(s) 8, 203, 208, 211, 341
TfiI GAWTC 1 cut(s) 378
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 3 cut(s) 150, 382, 454
TseI GCWGC 3 cut(s) 141, 157, 448
Tsp45I GTSAC 3 cut(s) 150, 382, 454
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 125
XceI RCATGY 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XhoI CTCGAG 1 cut(s) 297
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.