RLG00000035110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006964
Physical Location & Seq
Reverse (-)
61045359 .. 61046760
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035110

Sequence Viewer

Length: 573 bp
ATGCTCCTCAGCTATGAGCTCCCAATCGGCATCACTCATATCGTCCGACCTGTAGGCCATGACGAAGAGCCAGAGAGACTTTCTGGTTGGGGATTTTCGATTGGAGATGAAGAGGCCGCGGGCCTTGTTGTCGTCGCCGGAGAATCAGTGCTCGTTCAGGGTCTGATACAGTCGCGCCTTGCCTTTAGGTCGTCGCCGGCGAGCAACGGCATCGAAGGTGAAGATGGTGGTGCAAGATCTGATAGCGCCGTGCTGGTACTCGCGGGAATCAGAGGCGGAGACAACGACGTGAAGGCGGTGGAACTCGAATTGGAGCAGCAGAGAAATAGAAGAGGAGCTTTCTCGTTGAAATTGGCGAGGAGCCTGACCTGCCGCCTCGTCCAAACGGCGTCACCGACGTCTTCACCGTCGGAGAAGAGCAAGGAGAGATCTTTACAACCCGAATTGGGTTTAGGATTTGATCATGGCGGTGGTCGTGCTATTGATGCAGGTTTTTATGACAACGAAAAAAATTGCACTACTGGTTTTCTTGCCTGTGGAACTAAGATAGCTGATACGGATGATCGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.15

Weight (kDa)

4.95

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 401
Acc36I ACCTGC 2 cut(s) 377, 479
AccII CGCG 3 cut(s) 119, 175, 263
AciI CCGC 7 cut(s) 117, 119, 263, 276, 296, 373, 468
AcyI GRCGYC 2 cut(s) 389, 398
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 1 cut(s) 349
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 4 cut(s) 12, 19, 338, 551
AluI AGCT 4 cut(s) 12, 19, 338, 551
Alw21I GWGCWC 2 cut(s) 21, 153
Alw26I GTCTC 2 cut(s) 70, 273
AlwNI CAGNNNCTG 1 cut(s) 163
AoxI GGCC 3 cut(s) 55, 114, 121
ApeKI GCWGC 1 cut(s) 316
AspLEI GCGC 2 cut(s) 177, 248
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 230, 384, 396
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 2 cut(s) 21, 153
BbvCI CCTCAGC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 218
BceAI ACGGC 3 cut(s) 223, 233, 402
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 2 cut(s) 70, 273
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 2 cut(s) 377, 479
BglII AGATCT 2 cut(s) 236, 428
BisI GCNGC 3 cut(s) 117, 317, 373
BlsI GCNGC 3 cut(s) 118, 318, 374
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 362
BmsI GCATC 3 cut(s) 39, 219, 475
BpiI GAAGAC 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 8
BsaHI GRCGYC 2 cut(s) 389, 398
BsaJI CCNNGG 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 526
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 565
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMII CTCAG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 526
BseRI GAGGAG 2 cut(s) 348, 373
BseXI GCAGC 1 cut(s) 328
Bsh1236I CGCG 3 cut(s) 119, 175, 263
BshFI GGCC 3 cut(s) 57, 116, 123
BsiHKAI GWGCWC 2 cut(s) 21, 153
BsiSI CCGG 2 cut(s) 138, 197
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 2 cut(s) 70, 273
BsnI GGCC 3 cut(s) 57, 116, 123
Bsp1286I GDGCHC 2 cut(s) 21, 153
Bsp143I GATC 4 cut(s) 236, 428, 460, 562
BspACI CCGC 7 cut(s) 117, 119, 263, 276, 296, 373, 468
BspANI GGCC 3 cut(s) 57, 116, 123
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 3 cut(s) 119, 175, 263
BspLI GGNNCC 1 cut(s) 362
BspMI ACCTGC 2 cut(s) 377, 479
BspQI GCTCTTC 2 cut(s) 60, 410
BsrFI RCCGGY 1 cut(s) 196
BsrI ACTGG 1 cut(s) 526
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 4 cut(s) 236, 428, 460, 562
BssNI GRCGYC 2 cut(s) 389, 398
Bst4CI ACNGT 2 cut(s) 171, 408
Bst6I CTCTTC 4 cut(s) 60, 105, 325, 410
BstACI GRCGYC 2 cut(s) 389, 398
BstC8I GCNNGC 3 cut(s) 121, 198, 202
BstDEI CTNAG 2 cut(s) 8, 543
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 565
BstFNI CGCG 3 cut(s) 119, 175, 263
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 2 cut(s) 177, 248
BstKTI GATC 4 cut(s) 239, 431, 463, 565
BstMAI GTCTC 2 cut(s) 70, 273
BstMBI GATC 4 cut(s) 236, 428, 460, 562
BstMWI GCNNNNNNNGC 2 cut(s) 369, 485
BstSFI CTRYAG 1 cut(s) 51
BstUI CGCG 3 cut(s) 119, 175, 263
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 236, 428
BstYI RGATCY 2 cut(s) 236, 428
BsuRI GGCC 3 cut(s) 57, 116, 123
BtgI CCRYGG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 565
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 2 cut(s) 377, 479
Cac8I GCNNGC 3 cut(s) 121, 198, 202
CaiI CAGNNNCTG 1 cut(s) 163
CfoI GCGC 2 cut(s) 177, 248
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 121
Cfr42I CCGCGG 1 cut(s) 120
CseI GACGC 1 cut(s) 378
Csp6I GTAC 1 cut(s) 257
CviAII CATG 2 cut(s) 59, 464
CviJI RGCY 9 cut(s) 12, 19, 57, 70, 116, 123, 338, 363, 551
CviKI_1 RGCY 9 cut(s) 12, 19, 57, 70, 116, 123, 338, 363, 551
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 2 cut(s) 8, 543
DpnI GATC 4 cut(s) 238, 430, 462, 564
DpnII GATC 4 cut(s) 236, 428, 460, 562
Eam1104I CTCTTC 4 cut(s) 60, 105, 325, 410
EarI CTCTTC 4 cut(s) 60, 105, 325, 410
EciI GGCGGA 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 2 cut(s) 62, 467
FaiI YATR 6 cut(s) 15, 39, 60, 465, 498, 571
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FatI CATG 2 cut(s) 58, 463
FauI CCCGC 2 cut(s) 112, 256
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 3 cut(s) 117, 317, 373
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 3 cut(s) 117, 317, 373
GlaI GCGC 2 cut(s) 176, 247
GluI GCNGC 3 cut(s) 117, 317, 373
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 3 cut(s) 57, 116, 123
HapII CCGG 2 cut(s) 138, 197
HgaI GACGC 1 cut(s) 378
HhaI GCGC 2 cut(s) 177, 248
Hin1I GRCGYC 2 cut(s) 389, 398
Hin1II CATG 2 cut(s) 62, 467
Hin6I GCGC 2 cut(s) 175, 246
HinP1I GCGC 2 cut(s) 175, 246
HinfI GANTC 2 cut(s) 143, 267
HpaII CCGG 2 cut(s) 138, 197
HphI GGTGA 3 cut(s) 230, 384, 396
Hpy188I TCNGA 5 cut(s) 47, 165, 241, 272, 412
Hpy99I CGWCG 5 cut(s) 137, 196, 290, 400, 412
HpyAV CCTTC 2 cut(s) 209, 286
HpyCH4III ACNGT 2 cut(s) 171, 408
HpyCH4IV ACGT 2 cut(s) 288, 398
HpyCH4V TGCA 3 cut(s) 233, 488, 516
HpyF10VI GCNNNNNNNGC 2 cut(s) 369, 485
HpyF3I CTNAG 2 cut(s) 8, 543
HpySE526I ACGT 2 cut(s) 288, 398
Hsp92I GRCGYC 2 cut(s) 389, 398
Hsp92II CATG 2 cut(s) 62, 467
HspAI GCGC 2 cut(s) 175, 246
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 460
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 4 cut(s) 236, 428, 460, 562
LguI GCTCTTC 2 cut(s) 60, 410
LmnI GCTCC 5 cut(s) 9, 24, 313, 335, 360
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 3 cut(s) 39, 219, 475
MaeII ACGT 2 cut(s) 288, 398
MaeIII GTNAC 1 cut(s) 390
MalI GATC 4 cut(s) 238, 430, 462, 564
MboI GATC 4 cut(s) 236, 428, 460, 562
MboII GAAGA 6 cut(s) 77, 122, 233, 342, 393, 427
MflI RGATCY 2 cut(s) 236, 428
MhlI GDGCHC 2 cut(s) 21, 153
MluCI AATT 4 cut(s) 308, 350, 443, 511
MmeI TCCRAC 2 cut(s) 70, 390
MnlI CCTC 6 cut(s) 17, 106, 266, 326, 351, 386
MreI CGCCGGCG 1 cut(s) 196
MroNI GCCGGC 1 cut(s) 196
MslI CAYNNNNRTG 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 2 cut(s) 138, 197
MvnI CGCG 3 cut(s) 119, 175, 263
MwoI GCNNNNNNNGC 2 cut(s) 369, 485
NaeI GCCGGC 1 cut(s) 198
NdeII GATC 4 cut(s) 236, 428, 460, 562
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 2 cut(s) 62, 467
NlaIV GGNNCC 1 cut(s) 362
NmuCI GTSAC 1 cut(s) 390
PciSI GCTCTTC 2 cut(s) 60, 410
PcsI WCGNNNNNNNCGW 3 cut(s) 197, 392, 404
PdiI GCCGGC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 143, 267
PkrI GCNGC 3 cut(s) 118, 318, 374
Psp124BI GAGCTC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 362
PspPI GGNCC 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 163
PsuI RGATCY 2 cut(s) 236, 428
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 468
SacI GAGCTC 1 cut(s) 21
SacII CCGCGG 1 cut(s) 120
SapI GCTCTTC 2 cut(s) 60, 410
SatI GCNGC 3 cut(s) 117, 317, 373
Sau3AI GATC 4 cut(s) 236, 428, 460, 562
Sau96I GGNCC 1 cut(s) 121
SduI GDGCHC 2 cut(s) 21, 153
SfaNI GCATC 3 cut(s) 39, 219, 475
SfcI CTRYAG 1 cut(s) 51
Sfr303I CCGCGG 1 cut(s) 120
SgrAI CRCCGGYG 1 cut(s) 196
SgrBI CCGCGG 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 468
Sse9I AATT 4 cut(s) 308, 350, 443, 511
SsiI CCGC 7 cut(s) 117, 119, 263, 276, 296, 373, 468
SstI GAGCTC 1 cut(s) 21
TaaI ACNGT 2 cut(s) 171, 408
TaiI ACGT 2 cut(s) 291, 401
TaqI TCGA 4 cut(s) 98, 213, 306, 565
TasI AATT 4 cut(s) 308, 350, 443, 511
TauI GCSGC 2 cut(s) 119, 375
TfiI GAWTC 2 cut(s) 143, 267
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 390
TseI GCWGC 1 cut(s) 316
Tsp45I GTSAC 1 cut(s) 390
TspDTI ATGAA 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 1 cut(s) 153
ZraI GACGTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.