RLG00000036443

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006964
Physical Location & Seq
Reverse (-)
80690414 .. 80691060
647 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036443

Sequence Viewer

Length: 504 bp
ATGCTCCTCAGCTATGAGCTCCCAATCGGCATCACTCATATCGTCCGACCTGTAGGCCATGACGAAGAGCCAGAGAGACTTTCTGGTTGGGGATTTTCGATTGGAGATGAAGAGGCCGCGGGCCTTGTTGTCGTCGCCGGAGAATCAGTGCTCGTTCAGGGTCTGATACAGTCGCGCCTTGCCTTTAGGTCGTCGCCGGCGAGCAACGGCATCGAAGGTGAAGATGGTGGTGCAAGATCTGATAGCGCCGTGCTGGTACTCGGGGGAATCAAAGGCGGAGACAACGACGTGAAGGCGGTGGAACTCGAATTGGAGCAGCAGAGAAATAGAAGAGGAGCTTTCTCGTTGAAATTGGCGAGGAGCCTGACCTGCCGCCTCGTCCAAACGGCGTCACCGACGTCTTCACTGTCGGAGAAGAGCAAGGAGGTCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTATGATCAAAGAAAGACGGCAAGACCGATGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.33

Weight (kDa)

5.84

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 377
AccII CGCG 2 cut(s) 119, 175
AciI CCGC 5 cut(s) 117, 119, 276, 296, 373
AcyI GRCGYC 2 cut(s) 389, 398
AfaI GTAC 1 cut(s) 258
AgsI TTSAA 1 cut(s) 349
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 3 cut(s) 12, 19, 338
AluI AGCT 3 cut(s) 12, 19, 338
Alw21I GWGCWC 2 cut(s) 21, 153
Alw26I GTCTC 2 cut(s) 70, 273
AlwNI CAGNNNCTG 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 3 cut(s) 55, 114, 121
ApeKI GCWGC 1 cut(s) 316
AspLEI GCGC 2 cut(s) 177, 248
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 2 cut(s) 230, 384
AvaI CYCGRG 1 cut(s) 260
BanII GRGCYC 1 cut(s) 21
BauI CACGAG 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 2 cut(s) 21, 153
BbvCI CCTCAGC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 218
BceAI ACGGC 4 cut(s) 223, 233, 402, 500
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BclI TGATCA 1 cut(s) 471
BcoDI GTCTC 2 cut(s) 70, 273
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 377
BglII AGATCT 2 cut(s) 236, 464
BisI GCNGC 3 cut(s) 117, 317, 373
BlsI GCNGC 3 cut(s) 118, 318, 374
BmeT110I CYCGRG 1 cut(s) 260
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 362
BmsI GCATC 3 cut(s) 39, 219, 485
BpiI GAAGAC 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 8
BsaHI GRCGYC 2 cut(s) 389, 398
BsaJI CCNNGG 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse118I RCCGGY 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 22
BseRI GAGGAG 2 cut(s) 348, 373
BseXI GCAGC 1 cut(s) 328
Bsh1236I CGCG 2 cut(s) 119, 175
BshFI GGCC 3 cut(s) 57, 116, 123
BsiHKAI GWGCWC 2 cut(s) 21, 153
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 2 cut(s) 138, 197
BsmAI GTCTC 2 cut(s) 70, 273
BsnI GGCC 3 cut(s) 57, 116, 123
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 21, 153
Bsp143I GATC 3 cut(s) 236, 464, 471
BspACI CCGC 5 cut(s) 117, 119, 276, 296, 373
BspANI GGCC 3 cut(s) 57, 116, 123
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 2 cut(s) 119, 175
BspLI GGNNCC 1 cut(s) 362
BspMI ACCTGC 1 cut(s) 377
BspQI GCTCTTC 2 cut(s) 60, 410
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 3 cut(s) 236, 464, 471
BssNI GRCGYC 2 cut(s) 389, 398
BssSI CACGAG 1 cut(s) 430
Bst2BI CACGAG 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 171, 408
Bst6I CTCTTC 4 cut(s) 60, 105, 325, 410
BstACI GRCGYC 2 cut(s) 389, 398
BstC8I GCNNGC 3 cut(s) 121, 198, 202
BstDEI CTNAG 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 117
BstFNI CGCG 2 cut(s) 119, 175
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 2 cut(s) 177, 248
BstKTI GATC 3 cut(s) 239, 467, 474
BstMAI GTCTC 2 cut(s) 70, 273
BstMBI GATC 3 cut(s) 236, 464, 471
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstSFI CTRYAG 1 cut(s) 51
BstUI CGCG 2 cut(s) 119, 175
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 236, 464
BstYI RGATCY 2 cut(s) 236, 464
BsuRI GGCC 3 cut(s) 57, 116, 123
BtgI CCRYGG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 289
BtsIMutI CAGTG 2 cut(s) 153, 404
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 3 cut(s) 121, 198, 202
CaiI CAGNNNCTG 1 cut(s) 163
CfoI GCGC 2 cut(s) 177, 248
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 121
Cfr42I CCGCGG 1 cut(s) 120
CseI GACGC 1 cut(s) 378
Csp6I GTAC 1 cut(s) 257
CviAII CATG 1 cut(s) 59
CviJI RGCY 8 cut(s) 12, 19, 57, 70, 116, 123, 338, 363
CviKI_1 RGCY 8 cut(s) 12, 19, 57, 70, 116, 123, 338, 363
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 1 cut(s) 8
DpnI GATC 3 cut(s) 238, 466, 473
DpnII GATC 3 cut(s) 236, 464, 471
Eam1104I CTCTTC 4 cut(s) 60, 105, 325, 410
EarI CTCTTC 4 cut(s) 60, 105, 325, 410
EciI GGCGGA 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 1 cut(s) 62
FaiI YATR 4 cut(s) 15, 39, 60, 470
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FatI CATG 1 cut(s) 58
FauI CCCGC 1 cut(s) 112
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 3 cut(s) 117, 317, 373
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 3 cut(s) 117, 317, 373
GlaI GCGC 2 cut(s) 176, 247
GluI GCNGC 3 cut(s) 117, 317, 373
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 3 cut(s) 57, 116, 123
HapII CCGG 2 cut(s) 138, 197
HgaI GACGC 1 cut(s) 378
HhaI GCGC 2 cut(s) 177, 248
Hin1I GRCGYC 2 cut(s) 389, 398
Hin1II CATG 1 cut(s) 62
Hin6I GCGC 2 cut(s) 175, 246
HinP1I GCGC 2 cut(s) 175, 246
HinfI GANTC 2 cut(s) 143, 267
HpaII CCGG 2 cut(s) 138, 197
HphI GGTGA 2 cut(s) 230, 384
Hpy188I TCNGA 4 cut(s) 47, 165, 241, 412
Hpy188III TCNNGA 1 cut(s) 430
Hpy99I CGWCG 4 cut(s) 137, 196, 290, 400
HpyAV CCTTC 2 cut(s) 209, 286
HpyCH4III ACNGT 2 cut(s) 171, 408
HpyCH4IV ACGT 2 cut(s) 288, 398
HpyCH4V TGCA 2 cut(s) 233, 498
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 2 cut(s) 288, 398
Hsp92I GRCGYC 2 cut(s) 389, 398
Hsp92II CATG 1 cut(s) 62
HspAI GCGC 2 cut(s) 175, 246
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 471
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 3 cut(s) 236, 464, 471
LguI GCTCTTC 2 cut(s) 60, 410
LmnI GCTCC 5 cut(s) 9, 24, 313, 335, 360
LpnPI CCDG 9 cut(s) 63, 69, 84, 143, 151, 210, 239, 377, 382
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 3 cut(s) 39, 219, 485
MaeII ACGT 2 cut(s) 288, 398
MaeIII GTNAC 2 cut(s) 390, 427
MalI GATC 3 cut(s) 238, 466, 473
MboI GATC 3 cut(s) 236, 464, 471
MboII GAAGA 6 cut(s) 77, 122, 233, 342, 393, 427
MflI RGATCY 2 cut(s) 236, 464
MhlI GDGCHC 2 cut(s) 21, 153
MluCI AATT 2 cut(s) 308, 350
MmeI TCCRAC 2 cut(s) 70, 390
MnlI CCTC 6 cut(s) 17, 106, 326, 351, 386, 418
MreI CGCCGGCG 1 cut(s) 196
MroNI GCCGGC 1 cut(s) 196
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 2 cut(s) 138, 197
MvnI CGCG 2 cut(s) 119, 175
MwoI GCNNNNNNNGC 1 cut(s) 369
NaeI GCCGGC 1 cut(s) 198
NdeII GATC 3 cut(s) 236, 464, 471
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 362
NmuCI GTSAC 2 cut(s) 390, 427
PciSI GCTCTTC 2 cut(s) 60, 410
PcsI WCGNNNNNNNCGW 3 cut(s) 197, 392, 490
PdiI GCCGGC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 143, 267
PkrI GCNGC 3 cut(s) 118, 318, 374
Psp124BI GAGCTC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 362
PspPI GGNCC 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 163
PsuI RGATCY 2 cut(s) 236, 464
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SacI GAGCTC 1 cut(s) 21
SacII CCGCGG 1 cut(s) 120
SapI GCTCTTC 2 cut(s) 60, 410
SatI GCNGC 3 cut(s) 117, 317, 373
Sau3AI GATC 3 cut(s) 236, 464, 471
Sau96I GGNCC 1 cut(s) 121
SduI GDGCHC 2 cut(s) 21, 153
SfaNI GCATC 3 cut(s) 39, 219, 485
SfcI CTRYAG 1 cut(s) 51
Sfr303I CCGCGG 1 cut(s) 120
SgrAI CRCCGGYG 1 cut(s) 196
SgrBI CCGCGG 1 cut(s) 120
Sse9I AATT 2 cut(s) 308, 350
SsiI CCGC 5 cut(s) 117, 119, 276, 296, 373
SstI GAGCTC 1 cut(s) 21
TaaI ACNGT 2 cut(s) 171, 408
TaiI ACGT 2 cut(s) 291, 401
TaqI TCGA 3 cut(s) 98, 213, 306
TasI AATT 2 cut(s) 308, 350
TauI GCSGC 2 cut(s) 119, 375
TfiI GAWTC 2 cut(s) 143, 267
TscAI CASTG 2 cut(s) 153, 411
TseFI GTSAC 2 cut(s) 390, 427
TseI GCWGC 1 cut(s) 316
Tsp45I GTSAC 2 cut(s) 390, 427
TspDTI ATGAA 1 cut(s) 123
TspRI CASTG 2 cut(s) 153, 411
ZraI GACGTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.