RLG00000019648

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006964
Physical Location & Seq
Reverse (-)
54834014 .. 54835393
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019648

Sequence Viewer

Length: 591 bp
ATGCTCCTCAGCTATGAGCTCCCAATCGGCATCACTCATATCGTCCGACCTGTAGGCCATGACGAAGAGCCAGAGAGACTTTCTGGTTGGGGATTTTCGATTGGAGATGAAGAGGCCGCGGGCCTTGTTGTCGTCGCCGGAGAATCAGTGCTCGTTCAGGGTCTGATACAGTCGCGCCTTGCCTTTAGGTCGTCGCCGGCAAGCAACGGCATCGAAGGTGAAGATGGTGGTGCAAGATCTGATAGCGCCGTGCTGGTACTCGGGGGAATCAAAGGCGGAGACAACGACGTGAAGGCGGTGGAACTCGAATTGGAGCAGCAGAGAAATAGAAGAGGAGCTTTCTCGTTGAAATTGGCGAGGAGCCTGACCTGCCGCCTCGTCCAAACGGCGTCACCGACGTCTTCACCGTCGGAGAAGAGCAAGGAGGTGCAGCACCAAATCAAAAGATGTTATGCTGTGATCTTGTCCGAAAACGCAAGGAGGAGAAAGGCTTCTACTCTGCTTGTTTGTTTGCTTTGTTCTGCTGCTGTTGCTGCTATGGTGGCTGCTGCTGTGGCCCTTAGATTTCTTGCTATTGAGTGGGATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

20.95

Weight (kDa)

6.44

Isoelectric Point (pI)

61.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 377
AccII CGCG 2 cut(s) 119, 175
AciI CCGC 5 cut(s) 117, 119, 276, 296, 373
AcyI GRCGYC 2 cut(s) 389, 398
AfaI GTAC 1 cut(s) 258
AgsI TTSAA 1 cut(s) 349
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 3 cut(s) 12, 19, 338
AluI AGCT 3 cut(s) 12, 19, 338
Alw21I GWGCWC 2 cut(s) 21, 153
Alw26I GTCTC 2 cut(s) 70, 273
AlwNI CAGNNNCTG 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 4 cut(s) 55, 114, 121, 555
ApeKI GCWGC 6 cut(s) 316, 430, 524, 533, 545, 548
Asp700I GAANNNNTTC 1 cut(s) 490
AspLEI GCGC 2 cut(s) 177, 248
AspS9I GGNCC 2 cut(s) 121, 556
AsuHPI GGTGA 3 cut(s) 230, 384, 396
AvaI CYCGRG 1 cut(s) 260
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 2 cut(s) 21, 153
BbvCI CCTCAGC 1 cut(s) 8
BbvI GCAGC 6 cut(s) 328, 442, 511, 520, 532, 535
BccI CCATC 1 cut(s) 218
BceAI ACGGC 3 cut(s) 223, 233, 402
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BcoDI GTCTC 2 cut(s) 70, 273
BfaI CTAG 1 cut(s) 589
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 377
BglII AGATCT 1 cut(s) 236
BisI GCNGC 8 cut(s) 117, 317, 373, 431, 525, 534, 546, 549
BlsI GCNGC 8 cut(s) 118, 318, 374, 432, 526, 535, 547, 550
BmeT110I CYCGRG 1 cut(s) 260
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 121, 556
BmiI GGNNCC 1 cut(s) 362
BmsI GCATC 2 cut(s) 39, 219
BpiI GAAGAC 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 8
BsaHI GRCGYC 2 cut(s) 389, 398
BsaJI CCNNGG 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse118I RCCGGY 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 22
BseRI GAGGAG 3 cut(s) 348, 373, 496
BseXI GCAGC 6 cut(s) 328, 442, 511, 520, 532, 535
BsgI GTGCAG 1 cut(s) 449
Bsh1236I CGCG 2 cut(s) 119, 175
BshFI GGCC 4 cut(s) 57, 116, 123, 557
BsiHKAI GWGCWC 2 cut(s) 21, 153
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 2 cut(s) 138, 197
BsmAI GTCTC 2 cut(s) 70, 273
BsnI GGCC 4 cut(s) 57, 116, 123, 557
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 21, 153
Bsp143I GATC 3 cut(s) 236, 459, 583
BspACI CCGC 5 cut(s) 117, 119, 276, 296, 373
BspANI GGCC 4 cut(s) 57, 116, 123, 557
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 2 cut(s) 119, 175
BspLI GGNNCC 1 cut(s) 362
BspMI ACCTGC 1 cut(s) 377
BspQI GCTCTTC 2 cut(s) 60, 410
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 3 cut(s) 236, 459, 583
BssNI GRCGYC 2 cut(s) 389, 398
Bst4CI ACNGT 2 cut(s) 171, 408
Bst6I CTCTTC 4 cut(s) 60, 105, 325, 410
BstACI GRCGYC 2 cut(s) 389, 398
BstC8I GCNNGC 3 cut(s) 121, 198, 202
BstDEI CTNAG 2 cut(s) 8, 560
BstDSI CCRYGG 1 cut(s) 117
BstFNI CGCG 2 cut(s) 119, 175
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 2 cut(s) 177, 248
BstKTI GATC 3 cut(s) 239, 462, 586
BstMAI GTCTC 2 cut(s) 70, 273
BstMBI GATC 3 cut(s) 236, 459, 583
BstMWI GCNNNNNNNGC 5 cut(s) 369, 530, 533, 542, 554
BstSFI CTRYAG 1 cut(s) 51
BstUI CGCG 2 cut(s) 119, 175
BstV1I GCAGC 6 cut(s) 328, 442, 511, 520, 532, 535
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BsuRI GGCC 4 cut(s) 57, 116, 123, 557
BtgI CCRYGG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 3 cut(s) 121, 198, 202
CaiI CAGNNNCTG 1 cut(s) 163
CfoI GCGC 2 cut(s) 177, 248
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 121, 556
Cfr42I CCGCGG 1 cut(s) 120
CseI GACGC 1 cut(s) 378
Csp6I GTAC 1 cut(s) 257
CviAII CATG 1 cut(s) 59
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 2 cut(s) 8, 560
DpnI GATC 3 cut(s) 238, 461, 585
DpnII GATC 3 cut(s) 236, 459, 583
Eam1104I CTCTTC 4 cut(s) 60, 105, 325, 410
EarI CTCTTC 4 cut(s) 60, 105, 325, 410
EciI GGCGGA 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 1 cut(s) 62
FaiI YATR 5 cut(s) 15, 39, 60, 453, 539
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FatI CATG 1 cut(s) 58
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 8 cut(s) 117, 317, 373, 431, 525, 534, 546, 549
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 8 cut(s) 117, 317, 373, 431, 525, 534, 546, 549
FspBI CTAG 1 cut(s) 589
GlaI GCGC 2 cut(s) 176, 247
GluI GCNGC 8 cut(s) 117, 317, 373, 431, 525, 534, 546, 549
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 4 cut(s) 57, 116, 123, 557
HapII CCGG 2 cut(s) 138, 197
HgaI GACGC 1 cut(s) 378
HhaI GCGC 2 cut(s) 177, 248
Hin1I GRCGYC 2 cut(s) 389, 398
Hin1II CATG 1 cut(s) 62
Hin6I GCGC 2 cut(s) 175, 246
HinP1I GCGC 2 cut(s) 175, 246
HinfI GANTC 2 cut(s) 143, 267
HpaII CCGG 2 cut(s) 138, 197
HphI GGTGA 3 cut(s) 230, 384, 396
Hpy188I TCNGA 5 cut(s) 47, 165, 241, 412, 469
Hpy99I CGWCG 5 cut(s) 137, 196, 290, 400, 412
HpyAV CCTTC 2 cut(s) 209, 286
HpyCH4III ACNGT 2 cut(s) 171, 408
HpyCH4IV ACGT 2 cut(s) 288, 398
HpyCH4V TGCA 2 cut(s) 233, 430
HpyF10VI GCNNNNNNNGC 5 cut(s) 369, 530, 533, 542, 554
HpyF3I CTNAG 2 cut(s) 8, 560
HpySE526I ACGT 2 cut(s) 288, 398
Hsp92I GRCGYC 2 cut(s) 389, 398
Hsp92II CATG 1 cut(s) 62
HspAI GCGC 2 cut(s) 175, 246
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 3 cut(s) 236, 459, 583
LguI GCTCTTC 2 cut(s) 60, 410
LmnI GCTCC 5 cut(s) 9, 24, 313, 335, 360
LpnPI CCDG 9 cut(s) 63, 69, 84, 143, 151, 210, 239, 377, 382
Lsp1109I GCAGC 6 cut(s) 328, 442, 511, 520, 532, 535
LweI GCATC 2 cut(s) 39, 219
MaeI CTAG 1 cut(s) 589
MaeII ACGT 2 cut(s) 288, 398
MaeIII GTNAC 1 cut(s) 390
MalI GATC 3 cut(s) 238, 461, 585
MboI GATC 3 cut(s) 236, 459, 583
MboII GAAGA 6 cut(s) 77, 122, 233, 342, 393, 427
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 2 cut(s) 21, 153
MluCI AATT 2 cut(s) 308, 350
MmeI TCCRAC 2 cut(s) 70, 390
MnlI CCTC 7 cut(s) 17, 106, 326, 351, 386, 418, 474
MroNI GCCGGC 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 490
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 2 cut(s) 138, 197
MvnI CGCG 2 cut(s) 119, 175
MwoI GCNNNNNNNGC 5 cut(s) 369, 530, 533, 542, 554
NaeI GCCGGC 1 cut(s) 198
NdeII GATC 3 cut(s) 236, 459, 583
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 362
NmuCI GTSAC 1 cut(s) 390
PciSI GCTCTTC 2 cut(s) 60, 410
PcsI WCGNNNNNNNCGW 2 cut(s) 392, 404
PdiI GCCGGC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 490
PfeI GAWTC 2 cut(s) 143, 267
PkrI GCNGC 8 cut(s) 118, 318, 374, 432, 526, 535, 547, 550
Psp124BI GAGCTC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 362
PspPI GGNCC 2 cut(s) 121, 556
PstNI CAGNNNCTG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SacI GAGCTC 1 cut(s) 21
SacII CCGCGG 1 cut(s) 120
SapI GCTCTTC 2 cut(s) 60, 410
SatI GCNGC 8 cut(s) 117, 317, 373, 431, 525, 534, 546, 549
Sau3AI GATC 3 cut(s) 236, 459, 583
Sau96I GGNCC 2 cut(s) 121, 556
SduI GDGCHC 2 cut(s) 21, 153
SfaNI GCATC 2 cut(s) 39, 219
SfcI CTRYAG 1 cut(s) 51
Sfr303I CCGCGG 1 cut(s) 120
SgrBI CCGCGG 1 cut(s) 120
Sse9I AATT 2 cut(s) 308, 350
SsiI CCGC 5 cut(s) 117, 119, 276, 296, 373
SspMI CTAG 1 cut(s) 589
SstI GAGCTC 1 cut(s) 21
TaaI ACNGT 2 cut(s) 171, 408
TaiI ACGT 2 cut(s) 291, 401
TaqI TCGA 3 cut(s) 98, 213, 306
TasI AATT 2 cut(s) 308, 350
TauI GCSGC 2 cut(s) 119, 375
TfiI GAWTC 2 cut(s) 143, 267
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 390
TseI GCWGC 6 cut(s) 316, 430, 524, 533, 545, 548
Tsp45I GTSAC 1 cut(s) 390
TspDTI ATGAA 1 cut(s) 123
TspRI CASTG 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 490
XspI CTAG 1 cut(s) 589
ZraI GACGTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.