RLG00000020216

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006964
Physical Location & Seq
Forward (+)
62530308 .. 62530874
567 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020216

Sequence Viewer

Length: 348 bp
ATGAAGAAGCCGAGGGCCTTGTCGTTTTCACCGGATGCAGGTGAGGACGAGGAAGAGGCGATATTGGTGGTGGAGGGCCTCGTCGAAGAGCCGGAGTCGTGTAGATCGCGTCATGCGTTGAAGTCATCACCGGCGATTGTGAGAAGAAAAGAAGAGGAGAGGACTGGAGATCCAGTTCCAGTCGGCGTCGTGCGGCGGAGATCTTGCTCGTGCGTCGGAGATTCAATTCCAATTCCATTTGCCGACGTGATGGTGGAAAGAGGGAGTATTCGCCGGAGAGAGAAAGAGAGAGAGAGAGAGAAATTAATCTCAGAGGATTTCGTCGGAGAGAAAGAGGATAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.05

Weight (kDa)

5.28

Isoelectric Point (pI)

88.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 29
AccII CGCG 1 cut(s) 109
AciI CCGC 2 cut(s) 193, 196
AclWI GGATC 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 2 cut(s) 121, 225
AjiI CACGTC 1 cut(s) 247
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
AlwI GGATC 1 cut(s) 164
AoxI GGCC 2 cut(s) 15, 76
AseI ATTAAT 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 15, 76
AsuHPI GGTGA 3 cut(s) 21, 53, 120
BauI CACGAG 1 cut(s) 208
BccI CCATC 1 cut(s) 244
BfuAI ACCTGC 1 cut(s) 29
BglII AGATCT 1 cut(s) 200
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 15, 76
BmsI GCATC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 3 cut(s) 169, 173, 179
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 3 cut(s) 169, 173, 179
BseRI GAGGAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 2 cut(s) 17, 78
BsiSI CCGG 4 cut(s) 32, 92, 131, 274
BslI CCNNNNNNNGG 1 cut(s) 38
BsnI GGCC 2 cut(s) 17, 78
Bsp143I GATC 3 cut(s) 104, 169, 200
BspACI CCGC 2 cut(s) 193, 196
BspANI GGCC 2 cut(s) 17, 78
BspCNI CTCAG 1 cut(s) 323
BspFNI CGCG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 3 cut(s) 169, 173, 179
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 3 cut(s) 104, 169, 200
BssNI GRCGYC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 208
Bst2BI CACGAG 1 cut(s) 208
Bst6I CTCTTC 3 cut(s) 48, 81, 147
BstACI GRCGYC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 310
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 109
BstKTI GATC 3 cut(s) 107, 172, 203
BstMBI GATC 3 cut(s) 104, 169, 200
BstUI CGCG 1 cut(s) 109
BstX2I RGATCY 2 cut(s) 169, 200
BstYI RGATCY 2 cut(s) 169, 200
BsuRI GGCC 2 cut(s) 17, 78
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 40
BveI ACCTGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 15, 76
CseI GACGC 3 cut(s) 98, 175, 202
CviAII CATG 1 cut(s) 113
CviJI RGCY 4 cut(s) 10, 17, 78, 91
CviKI_1 RGCY 4 cut(s) 10, 17, 78, 91
DdeI CTNAG 1 cut(s) 310
DpnI GATC 3 cut(s) 106, 171, 202
DpnII GATC 3 cut(s) 104, 169, 200
Eam1104I CTCTTC 3 cut(s) 48, 81, 147
EarI CTCTTC 3 cut(s) 48, 81, 147
EciI GGCGGA 1 cut(s) 211
EcoO109I RGGNCCY 2 cut(s) 15, 76
FaeI CATG 1 cut(s) 116
FaiI YATR 1 cut(s) 114
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 194
GluI GCNGC 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 17, 78
HapII CCGG 4 cut(s) 32, 92, 131, 274
HgaI GACGC 3 cut(s) 98, 175, 202
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 116
HinfI GANTC 2 cut(s) 95, 221
HpaII CCGG 4 cut(s) 32, 92, 131, 274
HphI GGTGA 3 cut(s) 21, 53, 120
Hpy188I TCNGA 3 cut(s) 218, 313, 326
Hpy99I CGWCG 5 cut(s) 86, 191, 218, 248, 326
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 310
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 116
Kzo9I GATC 3 cut(s) 104, 169, 200
LguI GCTCTTC 1 cut(s) 81
LpnPI CCDG 8 cut(s) 24, 45, 105, 144, 150, 186, 192, 287
LweI GCATC 1 cut(s) 25
MaeII ACGT 1 cut(s) 246
MalI GATC 3 cut(s) 106, 171, 202
MboI GATC 3 cut(s) 104, 169, 200
MboII GAAGA 5 cut(s) 16, 65, 98, 156, 164
MflI RGATCY 2 cut(s) 169, 200
MluCI AATT 3 cut(s) 225, 231, 302
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 2 cut(s) 196, 304
MseI TTAA 1 cut(s) 305
MspI CCGG 4 cut(s) 32, 92, 131, 274
MvnI CGCG 1 cut(s) 109
NdeII GATC 3 cut(s) 104, 169, 200
NlaIII CATG 1 cut(s) 116
NmeAIII GCCGAG 1 cut(s) 36
PaqCI CACCTGC 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 195
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PshBI ATTAAT 1 cut(s) 305
PspPI GGNCC 2 cut(s) 15, 76
PsuI RGATCY 2 cut(s) 169, 200
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 3 cut(s) 104, 169, 200
Sau96I GGNCC 2 cut(s) 15, 76
SchI GAGTC 1 cut(s) 104
SetI ASST 2 cut(s) 43, 249
SfaNI GCATC 1 cut(s) 25
SgrAI CRCCGGYG 1 cut(s) 130
Sse9I AATT 3 cut(s) 225, 231, 302
SsiI CCGC 2 cut(s) 193, 196
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 84
TasI AATT 3 cut(s) 225, 231, 302
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 17
VspI ATTAAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.