Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006964

Physical Location & Seq

Genomic Coordinates Forward (+)

3136856 .. 3138042

Gene Structure 1187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG045100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCGGCGGTGGACAGCCTCGTCGAAGAGCCGGAGACCATGACGACTTTGTTGTGTAGATCACGCCATGTCTCCAAGTCATCACTGGCGATTGTGAGGCCGGTCCGTGGTGATCATGACTGTGATTTTGAGCCCTTCCAGGCTTCCAGCGGCAAAATTTTGACCGGCATCATGACCAGGTCACATAGCAGGTGCTCGGCCCAAGGGAGATCGTGGCTGACGTCATGCCCATCGGTGGAAAGAAGGATGTTTTTACCGCCAAAAAAAAAAGCCTCAGACTTTAATAACAGTCCAAGAGCTCAAACCAGCTCTGAGGTTAGTCATTACATTTCTTTACTTAGAGGTAACCATGTGGCTGATTTTAGACAAATTCATGCTCTTGCTTTGAAGTTGAATGCTTTTGAGGTGAATGGTTGGGTAGAAAACAAGCTTGCTATGCTTTACTCCAAGAATTATGAGCTTTTAGACTATATATGCCCAGAAGCAGTTCTACAAAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

167

Amino Acids

18.73

Weight (kDa)

8.64

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0137291
rosa_laevigata	RLG00000001724 RLG00000009243 RLG00000019648 RLG00000020216 RLG00000021354 RLG00000023888 RLG00000035110 RLG00000035642 RLG00000036443
rosa_multiflora	Rmu_sc0000762.1_g000066
rosa_roxburghii	Rroxscaffold_2G00080800
rosa_rugosa	Rorug02G0340800
rosa_samantha	Rh1AG052000 Rh1AG321500 Rh2AG389100 Rh2BG396900 Rh2CG340900 Rh2DG045100 Rh2DG411900 Rh4AG363900 Rh5BG170700 Rh5CG354900 Rh5CG408700 Rh5DG398700 Rh6AG362600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	180
AasI	GACNNNNNNGTC	1 cut(s)	20
AatII	GACGTC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	180
AciI	CCGC	4 cut(s)	5, 8, 150, 257
AcsI	RAATTY	2 cut(s)	156, 369
AcyI	GRCGYC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	107, 235
AgsI	TTSAA	2 cut(s)	388, 394
AjnI	CCWGG	2 cut(s)	138, 176
AluBI	AGCT	4 cut(s)	299, 309, 430, 460
AluI	AGCT	4 cut(s)	299, 309, 430, 460
Alw21I	GWGCWC	2 cut(s)	197, 301
Alw26I	GTCTC	2 cut(s)	29, 76
AoxI	GGCC	2 cut(s)	98, 198
ApoI	RAATTY	2 cut(s)	156, 369
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
Asp700I	GAANNNNTTC	1 cut(s)	486
AspS9I	GGNCC	2 cut(s)	103, 199
AsuHPI	GGTGA	2 cut(s)	122, 418
AvaII	GGWCC	1 cut(s)	103
BanII	GRGCYC	2 cut(s)	135, 301
BarI	GAAGNNNNNNTAC	1 cut(s)	474
Bbv12I	GWGCWC	2 cut(s)	197, 301
BccI	CCATC	1 cut(s)	238
BciT130I	CCWGG	2 cut(s)	140, 178
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	29, 76
BfuAI	ACCTGC	1 cut(s)	180
BisI	GCNGC	2 cut(s)	6, 151
BlsI	GCNGC	2 cut(s)	7, 152
Bme1390I	CCNGG	2 cut(s)	140, 178
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	103, 199
BmrFI	CCNGG	2 cut(s)	140, 178
BmsI	GCATC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	106, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 235
Bse118I	RCCGGY	2 cut(s)	100, 164
Bse1I	ACTGG	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	140, 178
BseDI	CCNNGG	2 cut(s)	106, 202
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	107, 235
BseMII	CTCAG	2 cut(s)	288, 303
BseNI	ACTGG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	100, 200
BsiHKAI	GWGCWC	2 cut(s)	197, 301
BsiSI	CCGG	3 cut(s)	32, 101, 165
BslI	CCNNNNNNNGG	2 cut(s)	107, 235
BsmAI	GTCTC	2 cut(s)	29, 76
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	100, 200
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	3 cut(s)	135, 197, 301
Bsp143I	GATC	3 cut(s)	59, 112, 209
BspACI	CCGC	4 cut(s)	5, 8, 150, 257
BspANI	GGCC	2 cut(s)	100, 200
BspCNI	CTCAG	2 cut(s)	287, 304
BspHI	TCATGA	2 cut(s)	115, 171
BspMI	ACCTGC	1 cut(s)	180
BspQI	GCTCTTC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	29
BsrFI	RCCGGY	2 cut(s)	100, 164
BsrI	ACTGG	1 cut(s)	90
BssAI	RCCGGY	2 cut(s)	100, 164
BssECI	CCNNGG	2 cut(s)	106, 202
BssMI	GATC	3 cut(s)	59, 112, 209
BssNI	GRCGYC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	2 cut(s)	140, 178
Bst4CI	ACNGT	2 cut(s)	122, 290
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	274, 312, 338
BstDSI	CCRYGG	1 cut(s)	106
BstEII	GGTNACC	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	252
BstKTI	GATC	3 cut(s)	62, 115, 212
BstMAI	GTCTC	2 cut(s)	29, 76
BstMBI	GATC	3 cut(s)	59, 112, 209
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNI	CCWGG	2 cut(s)	140, 178
BstPI	GGTNACC	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	138, 176
BsuRI	GGCC	2 cut(s)	100, 200
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	432
CciI	TCATGA	2 cut(s)	115, 171
Cfr10I	RCCGGY	2 cut(s)	100, 164
Cfr13I	GGNCC	2 cut(s)	103, 199
CpoI	CGGWCCG	1 cut(s)	103
CsiI	ACCWGGT	1 cut(s)	176
CspI	CGGWCCG	1 cut(s)	103
CviAII	CATG	7 cut(s)	40, 68, 116, 172, 225, 350, 374
DdeI	CTNAG	3 cut(s)	274, 312, 338
DpnI	GATC	3 cut(s)	61, 114, 211
DpnII	GATC	3 cut(s)	59, 112, 209
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	135, 301
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	138, 176
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	2 cut(s)	135, 301
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	7 cut(s)	43, 71, 119, 175, 228, 353, 377
FatI	CATG	7 cut(s)	39, 67, 115, 171, 224, 349, 373
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	6, 151
FokI	GGATG	1 cut(s)	259
FriOI	GRGCYC	2 cut(s)	135, 301
Fsp4HI	GCNGC	2 cut(s)	6, 151
GluI	GCNGC	2 cut(s)	6, 151
HaeIII	GGCC	2 cut(s)	100, 200
HapII	CCGG	3 cut(s)	32, 101, 165
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	7 cut(s)	43, 71, 119, 175, 228, 353, 377
HindIII	AAGCTT	1 cut(s)	428
HpaII	CCGG	3 cut(s)	32, 101, 165
HphI	GGTGA	2 cut(s)	122, 418
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	277, 313
Hpy188III	TCNNGA	2 cut(s)	116, 172
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	145, 237
HpyCH4III	ACNGT	2 cut(s)	122, 290
HpyCH4IV	ACGT	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	3 cut(s)	274, 312, 338
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	7 cut(s)	43, 71, 119, 175, 228, 353, 377
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	59, 112, 209
LguI	GCTCTTC	1 cut(s)	21
LweI	GCATC	1 cut(s)	177
MabI	ACCWGGT	1 cut(s)	176
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	180, 344
MalI	GATC	3 cut(s)	61, 114, 211
MboI	GATC	3 cut(s)	59, 112, 209
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	3 cut(s)	135, 197, 301
MluCI	AATT	3 cut(s)	156, 369, 451
MnlI	CCTC	6 cut(s)	29, 90, 283, 307, 335, 397
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	3 cut(s)	32, 101, 165
MspR9I	CCNGG	2 cut(s)	140, 178
Mva1269I	GAATGC	1 cut(s)	400
MvaI	CCWGG	2 cut(s)	140, 178
MwoI	GCNNNNNNNGC	1 cut(s)	436
NdeII	GATC	3 cut(s)	59, 112, 209
NlaIII	CATG	7 cut(s)	43, 71, 119, 175, 228, 353, 377
NmeAIII	GCCGAG	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	180
PagI	TCATGA	2 cut(s)	115, 171
PaqCI	CACCTGC	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PctI	GAATGC	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	486
PflFI	GACNNNGTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	7, 152
Psp124BI	GAGCTC	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	138, 176
PspEI	GGTNACC	1 cut(s)	344
PspGI	CCWGG	2 cut(s)	138, 176
PspPI	GGNCC	2 cut(s)	103, 199
PsyI	GACNNNGTC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	120
Rsr2I	CGGWCCG	1 cut(s)	103
RsrII	CGGWCCG	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	301
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	6, 151
Sau3AI	GATC	3 cut(s)	59, 112, 209
Sau96I	GGNCC	2 cut(s)	103, 199
ScrFI	CCNGG	2 cut(s)	140, 178
SduI	GDGCHC	3 cut(s)	135, 197, 301
SexAI	ACCWGGT	1 cut(s)	176
SfaNI	GCATC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	3 cut(s)	156, 369, 451
SsiI	CCGC	4 cut(s)	5, 8, 150, 257
SstI	GAGCTC	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	138, 176
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	122, 290
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	24
TasI	AATT	3 cut(s)	156, 369, 451
TauI	GCSGC	2 cut(s)	8, 153
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	90
Tth111I	GACNNNGTC	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	2 cut(s)	156, 369
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	486
ZraI	GACGTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.