Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006964

Physical Location & Seq

Genomic Coordinates Reverse (-)

69594580 .. 69595234

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035642

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCTCCTCAGCTATGAGCTCCCAATCGGCATCACTCATATCGTCCGACCTGTAGGCCATGACGAAGAGCCAGAGAGACTTTCTGGTTGGGGATTTTCGATTGGAGATGAAGAGGCCGCGGGCCTTGTTGTCGTCGCCGGAGAATCAGTGCTCGTTCAGGGTCTGATACAGGTGAGATCGAGGCATGTCTCCAAGTCGTCACTGGCGATTGTGAGGTATGCAACGACAGCGGTTTGTCAGTCGCGCCTTGCCTTTAGGTCGTCGCCGGCGAGCAACGGCATCGAAGGTGAAGATGGTGGTGCAAGATCTGATAGCGCCGTGCTGGTACTCGGGGGAATCAAAGGCGGAGACAACGACGTGAAGGCGGTGGAACTCGAATTGGAGCAGCAGAGAAATAGAAGAGGAGCTTTCTCGTTGAAATTGGCGAGGAGCCTGACCTGCCGCCTCGTCCAAACGGCGTCACAGACGTCTTCACCGTCGGAGAAGAGTAAGGAGGTCACGAGAGAGAGAGAGAGAGAGAGAGAGATCTATGATCAAAGAAAGACGGCAAGACCGATGCAACTGAGTTTATTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

20.91

Weight (kDa)

7.81

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0137291
rosa_laevigata	RLG00000001724 RLG00000009243 RLG00000019648 RLG00000020216 RLG00000021354 RLG00000023888 RLG00000035110 RLG00000035642 RLG00000036443
rosa_multiflora	Rmu_sc0000762.1_g000066
rosa_roxburghii	Rroxscaffold_2G00080800
rosa_rugosa	Rorug02G0340800
rosa_samantha	Rh1AG052000 Rh1AG321500 Rh2AG389100 Rh2BG396900 Rh2CG340900 Rh2DG045100 Rh2DG411900 Rh4AG363900 Rh5BG170700 Rh5CG354900 Rh5CG408700 Rh5DG398700 Rh6AG362600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	470
Acc36I	ACCTGC	1 cut(s)	446
AccII	CGCG	2 cut(s)	119, 244
AciI	CCGC	6 cut(s)	117, 119, 230, 345, 365, 442
AcyI	GRCGYC	2 cut(s)	458, 467
AfaI	GTAC	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	418
AjiI	CACGTC	1 cut(s)	358
AluBI	AGCT	3 cut(s)	12, 19, 407
AluI	AGCT	3 cut(s)	12, 19, 407
Alw21I	GWGCWC	2 cut(s)	21, 153
Alw26I	GTCTC	3 cut(s)	70, 193, 342
AlwNI	CAGNNNCTG	1 cut(s)	163
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	3 cut(s)	55, 114, 121
ApeKI	GCWGC	1 cut(s)	385
AspLEI	GCGC	2 cut(s)	246, 317
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	3 cut(s)	184, 299, 465
AvaI	CYCGRG	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	21
BauI	CACGAG	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	2 cut(s)	21, 153
BbvCI	CCTCAGC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	4 cut(s)	292, 302, 471, 561
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	3 cut(s)	70, 193, 342
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	446
BglII	AGATCT	2 cut(s)	305, 525
BisI	GCNGC	3 cut(s)	117, 386, 442
BlsI	GCNGC	3 cut(s)	118, 387, 443
BmeT110I	CYCGRG	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	431
BmsI	GCATC	3 cut(s)	39, 288, 546
BpiI	GAAGAC	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	8
BsaHI	GRCGYC	2 cut(s)	458, 467
BsaJI	CCNNGG	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	22, 554
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	2 cut(s)	417, 442
BseXI	GCAGC	1 cut(s)	397
Bsh1236I	CGCG	2 cut(s)	119, 244
BshFI	GGCC	3 cut(s)	57, 116, 123
BsiHKAI	GWGCWC	2 cut(s)	21, 153
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	138, 266
BsmAI	GTCTC	3 cut(s)	70, 193, 342
BsnI	GGCC	3 cut(s)	57, 116, 123
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	21, 153
Bsp143I	GATC	4 cut(s)	176, 305, 525, 532
BspACI	CCGC	6 cut(s)	117, 119, 230, 345, 365, 442
BspANI	GGCC	3 cut(s)	57, 116, 123
BspCNI	CTCAG	2 cut(s)	21, 555
BspFNI	CGCG	2 cut(s)	119, 244
BspLI	GGNNCC	1 cut(s)	431
BspMI	ACCTGC	1 cut(s)	446
BspQI	GCTCTTC	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	4 cut(s)	176, 305, 525, 532
BssNI	GRCGYC	2 cut(s)	458, 467
BssSI	CACGAG	1 cut(s)	499
Bst2BI	CACGAG	1 cut(s)	499
Bst4CI	ACNGT	1 cut(s)	477
Bst6I	CTCTTC	4 cut(s)	60, 105, 394, 479
BstACI	GRCGYC	2 cut(s)	458, 467
BstC8I	GCNNGC	3 cut(s)	121, 267, 271
BstDEI	CTNAG	2 cut(s)	8, 563
BstDSI	CCRYGG	1 cut(s)	117
BstFNI	CGCG	2 cut(s)	119, 244
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	2 cut(s)	246, 317
BstKTI	GATC	4 cut(s)	179, 308, 528, 535
BstMAI	GTCTC	3 cut(s)	70, 193, 342
BstMBI	GATC	4 cut(s)	176, 305, 525, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 438
BstNSI	RCATGY	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	51
BstUI	CGCG	2 cut(s)	119, 244
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	2 cut(s)	305, 525
BstYI	RGATCY	2 cut(s)	305, 525
BsuRI	GGCC	3 cut(s)	57, 116, 123
BtgI	CCRYGG	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	153, 200
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	3 cut(s)	121, 267, 271
CaiI	CAGNNNCTG	1 cut(s)	163
CfoI	GCGC	2 cut(s)	246, 317
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	121
Cfr42I	CCGCGG	1 cut(s)	120
CseI	GACGC	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	2 cut(s)	59, 185
CviJI	RGCY	8 cut(s)	12, 19, 57, 70, 116, 123, 407, 432
CviKI_1	RGCY	8 cut(s)	12, 19, 57, 70, 116, 123, 407, 432
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	2 cut(s)	8, 563
DpnI	GATC	4 cut(s)	178, 307, 527, 534
DpnII	GATC	4 cut(s)	176, 305, 525, 532
Eam1104I	CTCTTC	4 cut(s)	60, 105, 394, 479
EarI	CTCTTC	4 cut(s)	60, 105, 394, 479
EciI	GGCGGA	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	2 cut(s)	62, 188
FaiI	YATR	6 cut(s)	15, 39, 60, 186, 219, 531
FalI	AAGNNNNNCTT	2 cut(s)	391, 423
FatI	CATG	2 cut(s)	58, 184
FauI	CCCGC	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	3 cut(s)	117, 386, 442
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	3 cut(s)	117, 386, 442
GlaI	GCGC	2 cut(s)	245, 316
GluI	GCNGC	3 cut(s)	117, 386, 442
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	57, 116, 123
HapII	CCGG	2 cut(s)	138, 266
HgaI	GACGC	1 cut(s)	447
HhaI	GCGC	2 cut(s)	246, 317
Hin1I	GRCGYC	2 cut(s)	458, 467
Hin1II	CATG	2 cut(s)	62, 188
Hin6I	GCGC	2 cut(s)	244, 315
HinP1I	GCGC	2 cut(s)	244, 315
HinfI	GANTC	2 cut(s)	143, 336
HpaII	CCGG	2 cut(s)	138, 266
HphI	GGTGA	3 cut(s)	184, 299, 465
Hpy188I	TCNGA	4 cut(s)	47, 165, 310, 481
Hpy188III	TCNNGA	1 cut(s)	499
Hpy99I	CGWCG	4 cut(s)	137, 265, 359, 481
HpyAV	CCTTC	2 cut(s)	278, 355
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4IV	ACGT	2 cut(s)	357, 467
HpyCH4V	TGCA	3 cut(s)	221, 302, 559
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 438
HpyF3I	CTNAG	2 cut(s)	8, 563
HpySE526I	ACGT	2 cut(s)	357, 467
Hsp92I	GRCGYC	2 cut(s)	458, 467
Hsp92II	CATG	2 cut(s)	62, 188
HspAI	GCGC	2 cut(s)	244, 315
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	532
KspI	CCGCGG	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	176, 305, 525, 532
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	5 cut(s)	9, 24, 382, 404, 429
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	3 cut(s)	39, 288, 546
MaeII	ACGT	2 cut(s)	357, 467
MaeIII	GTNAC	3 cut(s)	198, 459, 496
MalI	GATC	4 cut(s)	178, 307, 527, 534
MboI	GATC	4 cut(s)	176, 305, 525, 532
MboII	GAAGA	6 cut(s)	77, 122, 302, 411, 462, 496
MflI	RGATCY	2 cut(s)	305, 525
MhlI	GDGCHC	2 cut(s)	21, 153
MluCI	AATT	2 cut(s)	377, 419
MmeI	TCCRAC	2 cut(s)	70, 459
MnlI	CCTC	8 cut(s)	17, 106, 174, 207, 395, 420, 455, 487
MreI	CGCCGGCG	1 cut(s)	265
MroNI	GCCGGC	1 cut(s)	265
MspA1I	CMGCKG	2 cut(s)	119, 230
MspI	CCGG	2 cut(s)	138, 266
MvnI	CGCG	2 cut(s)	119, 244
MwoI	GCNNNNNNNGC	2 cut(s)	227, 438
NaeI	GCCGGC	1 cut(s)	267
NdeII	GATC	4 cut(s)	176, 305, 525, 532
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	62, 188
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	3 cut(s)	198, 459, 496
NspI	RCATGY	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	4 cut(s)	203, 266, 473, 551
PdiI	GCCGGC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	143, 336
PkrI	GCNGC	3 cut(s)	118, 387, 443
Psp124BI	GAGCTC	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	163
PsuI	RGATCY	2 cut(s)	305, 525
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	21
SacII	CCGCGG	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	60
SatI	GCNGC	3 cut(s)	117, 386, 442
Sau3AI	GATC	4 cut(s)	176, 305, 525, 532
Sau96I	GGNCC	1 cut(s)	121
SduI	GDGCHC	2 cut(s)	21, 153
SfaNI	GCATC	3 cut(s)	39, 288, 546
SfcI	CTRYAG	1 cut(s)	51
Sfr303I	CCGCGG	1 cut(s)	120
SgrAI	CRCCGGYG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	377, 419
SsiI	CCGC	6 cut(s)	117, 119, 230, 345, 365, 442
SstI	GAGCTC	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	477
TaiI	ACGT	2 cut(s)	360, 470
TaqI	TCGA	4 cut(s)	98, 179, 282, 375
TaqII	GACCGA	1 cut(s)	568
TasI	AATT	2 cut(s)	377, 419
TauI	GCSGC	2 cut(s)	119, 444
TfiI	GAWTC	2 cut(s)	143, 336
TscAI	CASTG	2 cut(s)	153, 207
TseFI	GTSAC	3 cut(s)	198, 459, 496
TseI	GCWGC	1 cut(s)	385
Tsp45I	GTSAC	3 cut(s)	198, 459, 496
TspDTI	ATGAA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	153, 207
XceI	RCATGY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
ZraI	GACGTC	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.