Rh4AG363900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0006964
Physical Location & Seq
Forward (+)
67228328 .. 67230210
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG363900.1

Sequence Viewer

Length: 351 bp
ATGAAGAAGCTCAGGACCTTGTCGTTGTCACCGGATGCAGGTGAGGCGGAGGAAGAGGCGGTATTGGTGGTGGAGGGCCTCGTCGAAGAGCCGGAGTCGTGTAGATCGCGTCATGCGTTCAAGTCGTCACCGGCGATAGTGAGATGTCGAAAATCGACCATGTATGCATTTGTACCCACGACAACGCCGCCACCGCCACCGCCACCATTAAAAGCAATAGAGGTGCAACCCACTAACAAAGGTAGAGAACCCGTAGTTGGTTCTTTCCCTGAGCAAACCTGCACTGCCCACACTGCCAGCAGCCGCGCTACAATCCCAAAGTCGTCGCCACCGCAAACCAGAGAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.55

Weight (kDa)

7.73

Isoelectric Point (pI)

84.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 29
Acc36I ACCTGC 2 cut(s) 29, 287
AccII CGCG 2 cut(s) 109, 306
AciI CCGC 7 cut(s) 47, 59, 188, 194, 200, 304, 332
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 38, 257
AgsI TTSAA 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 2 cut(s) 15, 76
AsuHPI GGTGA 3 cut(s) 21, 53, 120
AvaII GGWCC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 312
BfuAI ACCTGC 2 cut(s) 29, 287
BisI GCNGC 3 cut(s) 188, 301, 304
BlsI GCNGC 3 cut(s) 189, 302, 305
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 15, 76
BmsI GCATC 1 cut(s) 25
Bpu10I CCTNAGC 2 cut(s) 11, 270
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 257
Bse118I RCCGGY 1 cut(s) 130
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 38, 257
BseMII CTCAG 2 cut(s) 25, 261
BseXI GCAGC 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 265
Bsh1236I CGCG 2 cut(s) 109, 306
BshFI GGCC 1 cut(s) 78
BsiSI CCGG 3 cut(s) 32, 92, 131
BslI CCNNNNNNNGG 2 cut(s) 38, 257
BsnI GGCC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 104
BspACI CCGC 7 cut(s) 47, 59, 188, 194, 200, 304, 332
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 2 cut(s) 24, 262
BspFNI CGCG 2 cut(s) 109, 306
BspMI ACCTGC 2 cut(s) 29, 287
BspQI GCTCTTC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssMI GATC 1 cut(s) 104
Bst6I CTCTTC 2 cut(s) 48, 81
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 11, 270
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 2 cut(s) 109, 306
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 1 cut(s) 107
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 3 cut(s) 44, 193, 293
BstUI CGCG 2 cut(s) 109, 306
BstV1I GCAGC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 40
BtsI GCAGTG 2 cut(s) 282, 291
BtsIMutI CAGTG 2 cut(s) 282, 291
BveI ACCTGC 2 cut(s) 29, 287
Cac8I GCNNGC 1 cut(s) 298
CfoI GCGC 1 cut(s) 308
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 15, 76
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 113, 160
CviJI RGCY 4 cut(s) 10, 78, 91, 303
CviKI_1 RGCY 4 cut(s) 10, 78, 91, 303
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 2 cut(s) 11, 270
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 48, 81
EarI CTCTTC 2 cut(s) 48, 81
EciI GGCGGA 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 15
EcoO109I RGGNCCY 2 cut(s) 15, 76
EcoT22I ATGCAT 1 cut(s) 169
FaeI CATG 2 cut(s) 116, 163
FaiI YATR 3 cut(s) 114, 161, 165
FatI CATG 2 cut(s) 112, 159
Fnu4HI GCNGC 3 cut(s) 188, 301, 304
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 3 cut(s) 188, 301, 304
GlaI GCGC 1 cut(s) 307
GluI GCNGC 3 cut(s) 188, 301, 304
HaeIII GGCC 1 cut(s) 78
HapII CCGG 3 cut(s) 32, 92, 131
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 308
Hin1II CATG 2 cut(s) 116, 163
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HinfI GANTC 1 cut(s) 95
HpaII CCGG 3 cut(s) 32, 92, 131
HphI GGTGA 3 cut(s) 21, 53, 120
Hpy188III TCNNGA 1 cut(s) 13
Hpy99I CGWCG 2 cut(s) 86, 328
HpyCH4V TGCA 4 cut(s) 38, 167, 226, 282
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 193, 293
HpyF3I CTNAG 2 cut(s) 11, 270
Hsp92II CATG 2 cut(s) 116, 163
HspAI GCGC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 104
LguI GCTCTTC 1 cut(s) 81
LpnPI CCDG 7 cut(s) 24, 45, 105, 144, 282, 292, 310
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 1 cut(s) 25
MaeIII GTNAC 2 cut(s) 27, 126
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MboII GAAGA 3 cut(s) 16, 65, 98
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 7 cut(s) 37, 43, 49, 67, 89, 214, 337
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 1 cut(s) 209
MspI CCGG 3 cut(s) 32, 92, 131
MvnI CGCG 2 cut(s) 109, 306
MwoI GCNNNNNNNGC 3 cut(s) 44, 193, 293
NdeII GATC 1 cut(s) 104
NlaIII CATG 2 cut(s) 116, 163
NmuCI GTSAC 2 cut(s) 27, 126
NsiI ATGCAT 1 cut(s) 169
PaqCI CACCTGC 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 81
PcsI WCGNNNNNNNCGW 2 cut(s) 113, 131
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 3 cut(s) 189, 302, 305
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 15
PspPI GGNCC 2 cut(s) 15, 76
PspPPI RGGWCCY 1 cut(s) 15
PsyI GACNNNGTC 1 cut(s) 19
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 3 cut(s) 188, 301, 304
Sau3AI GATC 1 cut(s) 104
Sau96I GGNCC 2 cut(s) 15, 76
SchI GAGTC 1 cut(s) 104
SetI ASST 6 cut(s) 12, 20, 43, 225, 244, 281
SfaNI GCATC 1 cut(s) 25
SgrAI CRCCGGYG 1 cut(s) 130
SinI GGWCC 1 cut(s) 15
SsiI CCGC 7 cut(s) 47, 59, 188, 194, 200, 304, 332
TaqI TCGA 3 cut(s) 84, 148, 155
TauI GCSGC 2 cut(s) 190, 306
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 2 cut(s) 289, 298
TseFI GTSAC 2 cut(s) 27, 126
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 2 cut(s) 27, 126
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 289, 298
Tth111I GACNNNGTC 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.