Rh2CG340900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006964
Physical Location & Seq
Forward (+)
45582273 .. 45589983
7711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG340900.1

Sequence Viewer

Length: 315 bp
ATGAAGAAGCCGAGGGCCTTGTCGTTGTCACCGGATGCAGGTGAGGCTGAGGAAGAGGCGATATTGGTGGTGGAGGGCCTCGTCGAAGAGCCGGAGTCGTGTAGATCGCGTCATACGTTCAAGTCGTCACCGGCGATTATGAGCCGTAATCAGTTACCACAGATACCAACCTATTGCAGAGGAAAGTACTTCCTAGTTGTCCATGTGGCAGGGCTGAATTGGGCGGCGGCGGCGGCGGAGCTCGAGTCGTTCCAGAAAACTTCTCTATCATTTGGTTCGCTGATTGCAGTGATGTTGGTGTTGGAGTCGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.34

Weight (kDa)

5.65

Isoelectric Point (pI)

58.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 29
AccII CGCG 1 cut(s) 109
AciI CCGC 5 cut(s) 224, 227, 230, 233, 236
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw21I GWGCWC 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 2 cut(s) 15, 76
AspS9I GGNCC 2 cut(s) 15, 76
AsuHPI GGTGA 3 cut(s) 21, 53, 120
AvaI CYCGRG 1 cut(s) 242
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 48
BceAI ACGGC 1 cut(s) 129
BfaI CTAG 2 cut(s) 194, 313
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 4 cut(s) 225, 228, 231, 234
BlsI GCNGC 4 cut(s) 226, 229, 232, 235
BmcAI AGTACT 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 15, 76
BmsI GCATC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse118I RCCGGY 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 2 cut(s) 17, 78
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 3 cut(s) 32, 92, 131
BslI CCNNNNNNNGG 1 cut(s) 38
BsnI GGCC 2 cut(s) 17, 78
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 104
BspACI CCGC 5 cut(s) 224, 227, 230, 233, 236
BspANI GGCC 2 cut(s) 17, 78
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 29
BspQI GCTCTTC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 1 cut(s) 104
Bst6I CTCTTC 2 cut(s) 48, 81
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 109
BstKTI GATC 1 cut(s) 107
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 3 cut(s) 44, 230, 233
BstUI CGCG 1 cut(s) 109
BsuRI GGCC 2 cut(s) 17, 78
BtsCI GGATG 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 294
BveI ACCTGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 15, 76
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 203
CviJI RGCY 8 cut(s) 10, 17, 47, 78, 91, 144, 214, 241
CviKI_1 RGCY 8 cut(s) 10, 17, 47, 78, 91, 144, 214, 241
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 48, 81
EarI CTCTTC 2 cut(s) 48, 81
EciI GGCGGA 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 241
EcoO109I RGGNCCY 2 cut(s) 15, 76
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 1 cut(s) 206
FaiI YATR 3 cut(s) 114, 140, 204
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 4 cut(s) 225, 228, 231, 234
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 4 cut(s) 225, 228, 231, 234
FspBI CTAG 2 cut(s) 194, 313
GluI GCNGC 4 cut(s) 225, 228, 231, 234
HaeIII GGCC 2 cut(s) 17, 78
HapII CCGG 3 cut(s) 32, 92, 131
HgaI GACGC 1 cut(s) 98
Hin1II CATG 1 cut(s) 206
HinfI GANTC 3 cut(s) 95, 245, 305
HpaII CCGG 3 cut(s) 32, 92, 131
HphI GGTGA 3 cut(s) 21, 53, 120
Hpy188III TCNNGA 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 3 cut(s) 38, 177, 287
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 230, 233
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 1 cut(s) 104
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 6 cut(s) 24, 45, 105, 144, 195, 266
LweI GCATC 1 cut(s) 25
MaeI CTAG 2 cut(s) 194, 313
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 3 cut(s) 27, 126, 153
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MboII GAAGA 3 cut(s) 16, 65, 98
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 1 cut(s) 217
MlyI GAGTC 3 cut(s) 104, 254, 314
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 7 cut(s) 6, 37, 43, 49, 67, 89, 173
MspI CCGG 3 cut(s) 32, 92, 131
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 3 cut(s) 44, 230, 233
NdeII GATC 1 cut(s) 104
NlaIII CATG 1 cut(s) 206
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 2 cut(s) 27, 126
PaeR7I CTCGAG 1 cut(s) 242
PaqCI CACCTGC 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 81
PcsI WCGNNNNNNNCGW 3 cut(s) 113, 122, 131
PkrI GCNGC 4 cut(s) 226, 229, 232, 235
PleI GAGTC 3 cut(s) 103, 253, 313
PpsI GAGTC 3 cut(s) 103, 253, 313
Psp124BI GAGCTC 1 cut(s) 243
PspPI GGNCC 2 cut(s) 15, 76
PspXI VCTCGAGB 1 cut(s) 242
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SacI GAGCTC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 81
SatI GCNGC 4 cut(s) 225, 228, 231, 234
Sau3AI GATC 1 cut(s) 104
Sau96I GGNCC 2 cut(s) 15, 76
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 3 cut(s) 104, 254, 314
SduI GDGCHC 1 cut(s) 243
SetI ASST 4 cut(s) 43, 119, 173, 243
SfaNI GCATC 1 cut(s) 25
Sfr274I CTCGAG 1 cut(s) 242
SgrAI CRCCGGYG 1 cut(s) 130
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 217
SsiI CCGC 5 cut(s) 224, 227, 230, 233, 236
SspMI CTAG 2 cut(s) 194, 313
SstI GAGCTC 1 cut(s) 243
TaiI ACGT 1 cut(s) 119
TaqI TCGA 2 cut(s) 84, 243
TasI AATT 1 cut(s) 217
TatI WGTACW 1 cut(s) 186
TauI GCSGC 4 cut(s) 227, 230, 233, 236
TscAI CASTG 1 cut(s) 294
TseFI GTSAC 2 cut(s) 27, 126
Tsp45I GTSAC 2 cut(s) 27, 126
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 294
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 2 cut(s) 194, 313
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.