Rh1AG321500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006964
Physical Location & Seq
Reverse (-)
55556486 .. 55560857
4372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG321500.1

Sequence Viewer

Length: 303 bp
ATGTATTCCAGGTTGGGTGGAGGAAGGGGTGATGGCGGCGGTGGACGGCCTCGTCGAAGAGCCGGAGAAAGGTTGTGCAGATCGCGCTATGTCTCCAAGTCGTCACTGGCGATTGTGAGGTATGCAACGACATCGGTTTGTCAGTCGCGCCTTGCCTCTAGGTCGTCGCCGGCGAGCAACGGCATCGAAGGTGAAGATGGTGGTGCAAGATCTGATAGCGCCGTGCCGGTAGTCGCGGGAATCAGAGGCGGAGACAACGATGTGAAGGCGGTGGCGCTCGAATTTGGAGCAGCAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.29

Weight (kDa)

10.58

Isoelectric Point (pI)

71.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 51
AccII CGCG 3 cut(s) 85, 148, 236
AciI CCGC 5 cut(s) 36, 39, 236, 249, 269
AcsI RAATTY 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 69
AjnI CCWGG 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 97, 246
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 281
AspLEI GCGC 4 cut(s) 87, 150, 221, 277
AsuHPI GGTGA 2 cut(s) 41, 203
BccI CCATC 2 cut(s) 26, 191
BceAI ACGGC 3 cut(s) 62, 196, 206
BcgI CGANNNNNNTGC 4 cut(s) 114, 148, 166, 200
BciT130I CCWGG 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 97, 246
BfaI CTAG 1 cut(s) 159
BfoI RGCGCY 2 cut(s) 222, 278
BglII AGATCT 1 cut(s) 209
BisI GCNGC 2 cut(s) 37, 291
BlsI GCNGC 2 cut(s) 38, 292
Bme1390I CCNGG 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 2 cut(s) 169, 226
Bse1I ACTGG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 111
BsgI GTGCAG 1 cut(s) 97
Bsh1236I CGCG 3 cut(s) 85, 148, 236
BshFI GGCC 1 cut(s) 49
BsiSI CCGG 3 cut(s) 63, 170, 227
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 2 cut(s) 97, 246
BsnI GGCC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 80, 209
BspACI CCGC 5 cut(s) 36, 39, 236, 249, 269
BspANI GGCC 1 cut(s) 49
BspFNI CGCG 3 cut(s) 85, 148, 236
BspQI GCTCTTC 1 cut(s) 52
BsrFI RCCGGY 2 cut(s) 169, 226
BsrI ACTGG 1 cut(s) 111
BssAI RCCGGY 2 cut(s) 169, 226
BssMI GATC 2 cut(s) 80, 209
Bst2UI CCWGG 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 171, 175
BstFNI CGCG 3 cut(s) 85, 148, 236
BstH2I RGCGCY 2 cut(s) 222, 278
BstHHI GCGC 4 cut(s) 87, 150, 221, 277
BstKTI GATC 2 cut(s) 83, 212
BstMAI GTCTC 2 cut(s) 97, 246
BstMBI GATC 2 cut(s) 80, 209
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstUI CGCG 3 cut(s) 85, 148, 236
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 171, 175
CfoI GCGC 4 cut(s) 87, 150, 221, 277
Cfr10I RCCGGY 2 cut(s) 169, 226
CviJI RGCY 2 cut(s) 49, 62
CviKI_1 RGCY 2 cut(s) 49, 62
DpnI GATC 2 cut(s) 82, 211
DpnII GATC 2 cut(s) 80, 209
DrdI GACNNNNNNGTC 1 cut(s) 51
DseDI GACNNNNNNGTC 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
EciI GGCGGA 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 8
FaiI YATR 2 cut(s) 90, 123
FauI CCCGC 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 37, 291
Fsp4HI GCNGC 2 cut(s) 37, 291
FspBI CTAG 1 cut(s) 159
GlaI GCGC 4 cut(s) 86, 149, 220, 276
GluI GCNGC 2 cut(s) 37, 291
HaeII RGCGCY 2 cut(s) 222, 278
HaeIII GGCC 1 cut(s) 49
HapII CCGG 3 cut(s) 63, 170, 227
HhaI GCGC 4 cut(s) 87, 150, 221, 277
Hin6I GCGC 4 cut(s) 85, 148, 219, 275
HinP1I GCGC 4 cut(s) 85, 148, 219, 275
HinfI GANTC 1 cut(s) 240
HpaII CCGG 3 cut(s) 63, 170, 227
HphI GGTGA 2 cut(s) 41, 203
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 214, 245
Hpy8I GTNNAC 1 cut(s) 44
Hpy99I CGWCG 2 cut(s) 57, 169
HpyAV CCTTC 3 cut(s) 18, 182, 259
HpyCH4V TGCA 3 cut(s) 78, 125, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HspAI GCGC 4 cut(s) 85, 148, 219, 275
KroI GCCGGC 1 cut(s) 169
KroNI GCCGGC 1 cut(s) 171
Kzo9I GATC 2 cut(s) 80, 209
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 5 cut(s) 22, 76, 92, 183, 240
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 102
MalI GATC 2 cut(s) 82, 211
MboI GATC 2 cut(s) 80, 209
MboII GAAGA 2 cut(s) 69, 206
MflI RGATCY 1 cut(s) 209
MluCI AATT 1 cut(s) 281
MnlI CCTC 5 cut(s) 14, 60, 111, 166, 239
MreI CGCCGGCG 1 cut(s) 169
MroNI GCCGGC 1 cut(s) 169
MspI CCGG 3 cut(s) 63, 170, 227
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MvnI CGCG 3 cut(s) 85, 148, 236
MwoI GCNNNNNNNGC 1 cut(s) 84
NaeI GCCGGC 1 cut(s) 171
NdeII GATC 2 cut(s) 80, 209
NgoMIV GCCGGC 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 52
PcsI WCGNNNNNNNCGW 3 cut(s) 52, 107, 170
PdiI GCCGGC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 240
PkrI GCNGC 2 cut(s) 38, 292
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PsuI RGATCY 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 52
SatI GCNGC 2 cut(s) 37, 291
Sau3AI GATC 2 cut(s) 80, 209
ScrFI CCNGG 1 cut(s) 10
SetI ASST 5 cut(s) 14, 74, 122, 164, 193
SfaNI GCATC 1 cut(s) 192
SgrAI CRCCGGYG 1 cut(s) 169
Sse9I AATT 1 cut(s) 281
SsiI CCGC 5 cut(s) 36, 39, 236, 249, 269
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 8
TaqI TCGA 3 cut(s) 55, 186, 279
TasI AATT 1 cut(s) 281
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 1 cut(s) 240
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 102
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 102
TspRI CASTG 1 cut(s) 111
XapI RAATTY 1 cut(s) 281
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.