Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006964

Physical Location & Seq

Genomic Coordinates Forward (+)

41453224 .. 41459391

Gene Structure 6168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG354900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCGGCGGTGGAGGGCCTCGTCGAAGAGCCGGAGACCATGACGACTTTGTTGTGTAGATCACGCCATGCCTCCAAGTCGTCACCGGCGATTGTGAGGTATGCAACGACATCGGTTTGTCAGTCGCGCCTTGCCTCTAGGTCGTCGCCGGCGAGCAACGGCATCGATTTGTTTGGTCAGTTTTTGGATATGGGTTATTGTGTGTGGTCTGAAATTGAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

8.06

Weight (kDa)

5.16

Isoelectric Point (pI)

75.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0137291
rosa_laevigata	RLG00000001724 RLG00000009243 RLG00000019648 RLG00000020216 RLG00000021354 RLG00000023888 RLG00000035110 RLG00000035642 RLG00000036443
rosa_multiflora	Rmu_sc0000762.1_g000066
rosa_roxburghii	Rroxscaffold_2G00080800
rosa_rugosa	Rorug02G0340800
rosa_samantha	Rh1AG052000 Rh1AG321500 Rh2AG389100 Rh2BG396900 Rh2CG340900 Rh2DG045100 Rh2DG411900 Rh4AG363900 Rh5BG170700 Rh5CG354900 Rh5CG408700 Rh5DG398700 Rh6AG362600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	127
AciI	CCGC	2 cut(s)	5, 8
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	75
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	4 cut(s)	93, 127, 145, 179
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	16
BmsI	GCATC	1 cut(s)	171
Bsa29I	ATCGAT	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	29
Bse118I	RCCGGY	2 cut(s)	85, 148
BseCI	ATCGAT	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	18
BshVI	ATCGAT	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	32, 86, 149
BsmAI	GTCTC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	18
Bso31I	GGTCTC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	2 cut(s)	5, 8
BspANI	GGCC	1 cut(s)	18
BspDI	ATCGAT	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	29
BsrFI	RCCGGY	2 cut(s)	85, 148
BssAI	RCCGGY	2 cut(s)	85, 148
BssMI	GATC	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	150, 154
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	1 cut(s)	62
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	59
BstUI	CGCG	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	18
BsuTUI	ATCGAT	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	150, 154
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	2 cut(s)	85, 148
Cfr13I	GGNCC	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	165
CviAII	CATG	2 cut(s)	40, 68
CviJI	RGCY	3 cut(s)	18, 31, 220
CviKI_1	RGCY	3 cut(s)	18, 31, 220
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	16
FaeI	CATG	2 cut(s)	43, 71
FaiI	YATR	4 cut(s)	41, 69, 102, 191
FatI	CATG	2 cut(s)	39, 67
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	3 cut(s)	32, 86, 149
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	43, 71
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HpaII	CCGG	3 cut(s)	32, 86, 149
HphI	GGTGA	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	211
Hpy99I	CGWCG	2 cut(s)	26, 148
HpyCH4V	TGCA	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	43, 71
HspAI	GCGC	1 cut(s)	127
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	59
LguI	GCTCTTC	1 cut(s)	21
LpnPI	CCDG	3 cut(s)	45, 99, 162
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	38
MluCI	AATT	1 cut(s)	213
MnlI	CCTC	5 cut(s)	7, 29, 82, 90, 145
MreI	CGCCGGCG	1 cut(s)	148
MroNI	GCCGGC	1 cut(s)	148
MseI	TTAA	1 cut(s)	223
MspI	CCGG	3 cut(s)	32, 86, 149
MvnI	CGCG	1 cut(s)	127
NaeI	GCCGGC	1 cut(s)	150
NdeII	GATC	1 cut(s)	59
NgoMIV	GCCGGC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	43, 71
NmuCI	GTSAC	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	2 cut(s)	86, 149
PdiI	GCCGGC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	223
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	16
SetI	ASST	3 cut(s)	101, 143, 222
SfaNI	GCATC	1 cut(s)	171
SgrAI	CRCCGGYG	2 cut(s)	85, 148
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	2 cut(s)	5, 8
SspMI	CTAG	1 cut(s)	138
TaqI	TCGA	2 cut(s)	24, 165
TasI	AATT	1 cut(s)	213
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	223
Tru9I	TTAA	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.