RLG00000004219

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005943
Physical Location & Seq
Forward (+)
57350401 .. 57350854
454 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004219

Sequence Viewer

Length: 330 bp
ATGCGGGCTTGGCCGAAGGCGGTGTGCGTCACCGGAGGGAATGGCTTCATCGACCATGGTCAGAGACTCCTTCGTCTTCTGCAGTGGCCAAATCGTCATCCTTGTCATCCACAAGATTTGGTATGCGCTGTGATCTCCGTCGGAGACAGCTTTTCCCAAGGTGTGGAGAAAGAGGTGGAGGAGCAGGTTCAGAGGCATTTTTCCTGTGAGATCGAATCGTTGGTTCTGACGACGATTACGGCGAGGCGTCTGAGAGATTACAGCAGGCGATTACGGCGAGGTCGGGTTCCAATCCTCCATTTGGTCAGAGAGCTATCCTCCGTCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.5

Weight (kDa)

9.57

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 72
Acc36I ACCTGC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 163
AciI CCGC 2 cut(s) 4, 20
AcoI YGGCCR 2 cut(s) 11, 86
AcyI GRCGYC 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 163, 301
AluBI AGCT 2 cut(s) 150, 313
AluI AGCT 2 cut(s) 150, 313
Alw26I GTCTC 2 cut(s) 58, 138
AoxI GGCC 2 cut(s) 11, 86
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 22
BalI TGGCCA 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 68
BceAI ACGGC 2 cut(s) 255, 290
BcoDI GTCTC 2 cut(s) 58, 138
BfmI CTRYAG 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 288
BoxI GACNNNNGTC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 68
BplI GAGNNNNNCTC 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 55, 157
BsaWI WCCGGW 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 301
BseDI CCNNGG 2 cut(s) 55, 157
BseGI GGATG 2 cut(s) 97, 106
BseLI CCNNNNNNNGG 2 cut(s) 163, 301
BseMII CTCAG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 194
BshFI GGCC 2 cut(s) 13, 88
BsiSI CCGG 1 cut(s) 33
BslI CCNNNNNNNGG 2 cut(s) 163, 301
BsmAI GTCTC 2 cut(s) 58, 138
BsnI GGCC 2 cut(s) 13, 88
Bsp143I GATC 2 cut(s) 132, 210
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 2 cut(s) 4, 20
BspANI GGCC 2 cut(s) 13, 88
BspCNI CTCAG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 288
BspMAI CTGCAG 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 55, 157
BssMI GATC 2 cut(s) 132, 210
BssNI GRCGYC 1 cut(s) 247
BssT1I CCWWGG 2 cut(s) 55, 157
BstACI GRCGYC 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 6, 266
BstDEI CTNAG 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 2 cut(s) 97, 106
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 135, 213
BstMAI GTCTC 2 cut(s) 58, 138
BstMBI GATC 2 cut(s) 132, 210
BstMWI GCNNNNNNNGC 2 cut(s) 10, 274
BstPAI GACNNNNGTC 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 68
BsuRI GGCC 2 cut(s) 13, 88
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 2 cut(s) 97, 106
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 89
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 6, 266
CfoI GCGC 1 cut(s) 128
CseI GACGC 2 cut(s) 16, 236
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviAII CATG 1 cut(s) 56
CviJI RGCY 6 cut(s) 8, 13, 45, 88, 150, 313
CviKI_1 RGCY 6 cut(s) 8, 13, 45, 88, 150, 313
DdeI CTNAG 1 cut(s) 251
DpnI GATC 2 cut(s) 134, 212
DpnII GATC 2 cut(s) 132, 210
DrdI GACNNNNNNGTC 1 cut(s) 72
DseDI GACNNNNNNGTC 1 cut(s) 72
EaeI YGGCCR 2 cut(s) 11, 86
Eco130I CCWWGG 2 cut(s) 55, 157
EcoT14I CCWWGG 2 cut(s) 55, 157
ErhI CCWWGG 2 cut(s) 55, 157
FaeI CATG 1 cut(s) 59
FaiI YATR 2 cut(s) 57, 124
FatI CATG 1 cut(s) 55
FokI GGATG 2 cut(s) 84, 93
GlaI GCGC 1 cut(s) 127
HaeIII GGCC 2 cut(s) 13, 88
HapII CCGG 1 cut(s) 33
HgaI GACGC 2 cut(s) 16, 236
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 1 cut(s) 59
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 2 cut(s) 66, 215
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 6 cut(s) 63, 143, 192, 228, 252, 308
Hpy99I CGWCG 2 cut(s) 143, 235
HpyAV CCTTC 2 cut(s) 10, 80
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 274
HpyF3I CTNAG 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 1 cut(s) 59
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 2 cut(s) 132, 210
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 4 cut(s) 46, 170, 217, 250
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 134, 212
MboI GATC 2 cut(s) 132, 210
MboII GAAGA 1 cut(s) 68
MlsI TGGCCA 1 cut(s) 88
MluNI TGGCCA 1 cut(s) 88
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 8 cut(s) 29, 166, 172, 186, 237, 272, 305, 328
Mox20I TGGCCA 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 44
MscI TGGCCA 1 cut(s) 88
Msp20I TGGCCA 1 cut(s) 88
MspI CCGG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 10, 274
NcoI CCATGG 1 cut(s) 55
NdeII GATC 2 cut(s) 132, 210
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 215
PflMI CCANNNNNTGG 1 cut(s) 163
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PshAI GACNNNNGTC 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 288
PstI CTGCAG 1 cut(s) 84
Sau3AI GATC 2 cut(s) 132, 210
SchI GAGTC 1 cut(s) 60
SetI ASST 6 cut(s) 152, 163, 177, 189, 283, 315
SfcI CTRYAG 1 cut(s) 80
SsiI CCGC 2 cut(s) 4, 20
StyI CCWWGG 2 cut(s) 55, 157
TaqI TCGA 2 cut(s) 51, 213
TfiI GAWTC 1 cut(s) 215
TscAI CASTG 1 cut(s) 89
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 37
TspGWI ACGGA 2 cut(s) 127, 310
TspRI CASTG 1 cut(s) 89
Van91I CCANNNNNTGG 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.