Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005943

Physical Location & Seq

Genomic Coordinates Reverse (-)

31995106 .. 31998571

Gene Structure 3466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013467

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTTTGCAAATGAGTTGAGGAAGAAGGCCAAAGAAAGGCTGAGTATCAAAGGACTCCGACCCTTCCTCCCCCACCGCCTCCTCTACGTCAGCGCTCTCCTCCGCCCAGCCTCGGCCCTTGAAGTCGATGGTGATCGGCACCATCTTCGGCCACCGCCGCGGCCACATCTGGTTCTGCATCTAACACGATTGCCTCTCGACCCGACTCGCGCTCCTCCAGGAGCTCTCCATCTTGACCCACTAGCTCGTCAAGGAAATGCGCCGCAAGCTTGGGTTCGCCGCCCGGAGGAAAGCCTGACCAAGATTAATCTGGAGTCGGTGCATGTGATCAACGAGGGATGGGCAAGCCCATTAAGAAGGTTCATGAGGGAGGACAAGTATTTGTTGAGCTTGCACTTCAATTCATTGAGAGTCAAGGATGGATCTATGCTGCCCTCCCCCTATTGGTGTTTCCCACCGATCTACCGTGGACATCCTCTACGATTTACTCAACGCTTGACAGCAATTAGGTCGCTTGCTCTTTTGATACTTTTAATCTCCTTTTCTTCGGGGTTCGATGTGTGGAAGGCATGGTTTCACCATTGGGATTGGCTAGCCTTCGACAACGGCTTTGCTTCTATGATAGATGGTGATGGCGAGGTTTGGCGGCAGATCAGTTGGCCATCTCCTATCGGTGACGGCGTTGTGCTCTGGCAAGTCCCGACCTTGATGTTTACCATGGTGGGGGCAGCAGCGGACGTCAGTGACGGTAGTGGCCTAGTGCTGAGGCCAAATCTAATCCTAATTGATGGGCTTGAAGTGGTGCAATCCCGAGACCTGTGGAAGATCTGGGTTTGGGACCCAGGTATTAGCGATCTGCATCTCTACTATGTCGGATTTTGGTGGTTTGGTGGTGTCTCCATCACCGGGAGAGTAGTTTCTAACCATATTCAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0004779 GO:0004781 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009970 GO:0009987 GO:0009991 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0070566 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko00230 ko00261 ko00450 ko00920 ko01100 ko01120 ko01130 map00230 map00261 map00450 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

ATP-sulfurylase PUA_2

Protein Analysis

313

Amino Acids

35.63

Weight (kDa)

9.58

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_2	PF14306	94 - 147	3.4e-08	PUA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005943)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004219 RLG00000005084 RLG00000010195 RLG00000013467 RLG00000014305 RLG00000028980 RLG00000030839 RLG00000032541
rosa_multiflora	Rmu_co8333173.1_g000001 Rmu_sc0001609.1_g000028 Rmu_sc0003426.1_g000014 Rmu_sc0010981.1_g000007 Rmu_sc0019815.1_g000001 Rmu_sc0023018.1_g000001 Rmu_ssc0000323.1_g000018
rosa_roxburghii	Rroxscaffold_1G00008410 Rroxscaffold_4G00294860 Rroxscaffold_5G00373940
rosa_samantha	Rh2BG307500 Rh2CG285600 Rh3CG238400 Rh4CG114700 Rh5DG479400 Rh5DG522500 Rh6CG228800 Rh6DG235200 Rh7AG303100 Rh7CG263200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	741
AccB1I	GGYRCC	1 cut(s)	138
AccII	CGCG	2 cut(s)	160, 210
AciI	CCGC	9 cut(s)	76, 103, 155, 158, 160, 263, 280, 646, 734
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	3 cut(s)	149, 161, 659
AcyI	GRCGYC	1 cut(s)	738
AfeI	AGCGCT	1 cut(s)	94
AfiI	CCNNNNNNNGG	6 cut(s)	36, 112, 286, 444, 723, 906
AgsI	TTSAA	4 cut(s)	122, 400, 797, 932
AjnI	CCWGG	2 cut(s)	217, 841
AluBI	AGCT	4 cut(s)	224, 245, 269, 390
AluI	AGCT	4 cut(s)	224, 245, 269, 390
Alw21I	GWGCWC	2 cut(s)	226, 690
Alw26I	GTCTC	2 cut(s)	807, 901
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	810
Aor51HI	AGCGCT	1 cut(s)	94
AoxI	GGCC	7 cut(s)	27, 114, 149, 161, 659, 754, 767
ApeKI	GCWGC	3 cut(s)	430, 728, 731
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
AseI	ATTAAT	1 cut(s)	306
AspLEI	GCGC	3 cut(s)	95, 212, 262
AspS9I	GGNCC	2 cut(s)	115, 838
AsuC2I	CCSGG	2 cut(s)	284, 907
AsuHPI	GGTGA	5 cut(s)	143, 569, 641, 686, 895
AsuNHI	GCTAGC	1 cut(s)	592
AvaI	CYCGRG	1 cut(s)	810
AvaII	GGWCC	1 cut(s)	838
BalI	TGGCCA	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	2 cut(s)	226, 690
BbvCI	CCTCAGC	1 cut(s)	764
BbvI	GCAGC	3 cut(s)	417, 740, 743
BceAI	ACGGC	2 cut(s)	622, 694
BcgI	CGANNNNNNTGC	4 cut(s)	128, 162, 492, 526
BciT130I	CCWGG	2 cut(s)	219, 843
BclI	TGATCA	1 cut(s)	327
BcnI	CCSGG	2 cut(s)	284, 907
BcoDI	GTCTC	2 cut(s)	807, 901
BfaI	CTAG	3 cut(s)	242, 593, 758
BfoI	RGCGCY	1 cut(s)	96
BglII	AGATCT	1 cut(s)	825
BisI	GCNGC	8 cut(s)	158, 161, 263, 280, 431, 647, 729, 732
BlsI	GCNGC	8 cut(s)	159, 162, 264, 281, 432, 648, 730, 733
Bme1390I	CCNGG	4 cut(s)	219, 284, 843, 907
Bme18I	GGWCC	1 cut(s)	838
BmeT110I	CYCGRG	1 cut(s)	810
BmgT120I	GGNCC	2 cut(s)	115, 838
BmiI	GGNNCC	3 cut(s)	140, 839, 840
BmrFI	CCNGG	4 cut(s)	219, 284, 843, 907
BmsI	GCATC	2 cut(s)	187, 868
BmtI	GCTAGC	1 cut(s)	596
BpmI	CTGGAG	2 cut(s)	201, 332
Bpu10I	CCTNAGC	1 cut(s)	764
BpuMI	CCSGG	2 cut(s)	284, 907
BsaBI	GATNNNNATC	2 cut(s)	132, 858
BsaHI	GRCGYC	1 cut(s)	738
BsaI	GGTCTC	1 cut(s)	807
BsaJI	CCNNGG	5 cut(s)	111, 158, 466, 717, 841
BsaXI	ACNNNNNCTCC	6 cut(s)	51, 81, 196, 226, 362, 392
Bsc4I	CCNNNNNNNGG	6 cut(s)	36, 112, 286, 444, 723, 906
Bse8I	GATNNNNATC	2 cut(s)	132, 858
BseBI	CCWGG	2 cut(s)	219, 843
BseDI	CCNNGG	5 cut(s)	111, 158, 466, 717, 841
BseGI	GGATG	3 cut(s)	344, 424, 472
BseJI	GATNNNNATC	2 cut(s)	132, 858
BseLI	CCNNNNNNNGG	6 cut(s)	36, 112, 286, 444, 723, 906
BseMII	CTCAG	2 cut(s)	32, 755
BseRI	GAGGAG	3 cut(s)	71, 89, 204
BseXI	GCAGC	3 cut(s)	417, 740, 743
BseYI	CCCAGC	1 cut(s)	106
Bsh1236I	CGCG	2 cut(s)	160, 210
BshFI	GGCC	7 cut(s)	29, 116, 151, 163, 661, 756, 769
BshNI	GGYRCC	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	226, 690
BsiHKCI	CYCGRG	1 cut(s)	810
BsiSI	CCGG	2 cut(s)	284, 906
BslFI	GGGAC	2 cut(s)	683, 851
BslI	CCNNNNNNNGG	6 cut(s)	36, 112, 286, 444, 723, 906
BsmAI	GTCTC	2 cut(s)	807, 901
BsmFI	GGGAC	2 cut(s)	683, 851
BsnI	GGCC	7 cut(s)	29, 116, 151, 163, 661, 756, 769
Bso31I	GGTCTC	1 cut(s)	807
BsoBI	CYCGRG	1 cut(s)	810
Bsp1286I	GDGCHC	2 cut(s)	226, 690
Bsp143I	GATC	7 cut(s)	133, 327, 422, 459, 651, 825, 853
Bsp19I	CCATGG	1 cut(s)	717
BspACI	CCGC	9 cut(s)	76, 103, 155, 158, 160, 263, 280, 646, 734
BspANI	GGCC	7 cut(s)	29, 116, 151, 163, 661, 756, 769
BspCNI	CTCAG	2 cut(s)	33, 756
BspFNI	CGCG	2 cut(s)	160, 210
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	3 cut(s)	140, 839, 840
BspOI	GCTAGC	1 cut(s)	596
BspPI	GGATC	1 cut(s)	430
BspT107I	GGYRCC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	807
BssECI	CCNNGG	5 cut(s)	111, 158, 466, 717, 841
BssMI	GATC	7 cut(s)	133, 327, 422, 459, 651, 825, 853
BssNI	GRCGYC	1 cut(s)	738
BssT1I	CCWWGG	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	219, 843
Bst4CI	ACNGT	2 cut(s)	467, 749
BstACI	GRCGYC	1 cut(s)	738
BstC8I	GCNNGC	5 cut(s)	267, 346, 392, 516, 594
BstDEI	CTNAG	2 cut(s)	41, 764
BstDSI	CCRYGG	3 cut(s)	158, 466, 717
BstF5I	GGATG	3 cut(s)	344, 424, 472
BstFNI	CGCG	2 cut(s)	160, 210
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	3 cut(s)	95, 212, 262
BstKTI	GATC	7 cut(s)	136, 330, 425, 462, 654, 828, 856
BstMAI	GTCTC	2 cut(s)	807, 901
BstMBI	GATC	7 cut(s)	133, 327, 422, 459, 651, 825, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 266
BstNI	CCWGG	2 cut(s)	219, 843
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	4 cut(s)	217, 282, 841, 905
BstUI	CGCG	2 cut(s)	160, 210
BstV1I	GCAGC	3 cut(s)	417, 740, 743
BstX2I	RGATCY	2 cut(s)	422, 825
BstYI	RGATCY	2 cut(s)	422, 825
BsuRI	GGCC	7 cut(s)	29, 116, 151, 163, 661, 756, 769
BtgI	CCRYGG	3 cut(s)	158, 466, 717
BtsCI	GGATG	3 cut(s)	344, 424, 472
BtsIMutI	CAGTG	1 cut(s)	748
Cac8I	GCNNGC	5 cut(s)	267, 346, 392, 516, 594
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	3 cut(s)	95, 212, 262
Cfr13I	GGNCC	2 cut(s)	115, 838
Cfr42I	CCGCGG	1 cut(s)	161
CviAII	CATG	4 cut(s)	323, 364, 570, 718
DdeI	CTNAG	2 cut(s)	41, 764
DpnI	GATC	7 cut(s)	135, 329, 424, 461, 653, 827, 855
DpnII	GATC	7 cut(s)	133, 327, 422, 459, 651, 825, 853
EaeI	YGGCCR	3 cut(s)	149, 161, 659
EciI	GGCGGA	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	717
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	807
Eco47I	GGWCC	1 cut(s)	838
Eco47III	AGCGCT	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	810
EcoICRI	GAGCTC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	838
EcoRII	CCWGG	2 cut(s)	217, 841
EcoT14I	CCWWGG	1 cut(s)	717
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	4 cut(s)	326, 367, 573, 721
FaiI	YATR	8 cut(s)	324, 365, 428, 571, 620, 719, 870, 927
FaqI	GGGAC	2 cut(s)	683, 851
FatI	CATG	4 cut(s)	322, 363, 569, 717
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	8 cut(s)	158, 161, 263, 280, 431, 647, 729, 732
FokI	GGATG	3 cut(s)	351, 431, 459
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	8 cut(s)	158, 161, 263, 280, 431, 647, 729, 732
FspBI	CTAG	3 cut(s)	242, 593, 758
GlaI	GCGC	3 cut(s)	94, 211, 261
GluI	GCNGC	8 cut(s)	158, 161, 263, 280, 431, 647, 729, 732
GsaI	CCCAGC	1 cut(s)	110
GsuI	CTGGAG	2 cut(s)	201, 332
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	7 cut(s)	29, 116, 151, 163, 661, 756, 769
HapII	CCGG	2 cut(s)	284, 906
HhaI	GCGC	3 cut(s)	95, 212, 262
Hin1I	GRCGYC	1 cut(s)	738
Hin1II	CATG	4 cut(s)	326, 367, 573, 721
Hin6I	GCGC	3 cut(s)	93, 210, 260
HinP1I	GCGC	3 cut(s)	93, 210, 260
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	4 cut(s)	54, 205, 314, 411
HpaII	CCGG	2 cut(s)	284, 906
HphI	GGTGA	5 cut(s)	143, 569, 641, 686, 895
Hpy166II	GTNNAC	2 cut(s)	470, 714
Hpy188I	TCNGA	2 cut(s)	59, 875
Hpy188III	TCNNGA	6 cut(s)	197, 233, 311, 364, 700, 810
Hpy8I	GTNNAC	2 cut(s)	470, 714
HpyAV	CCTTC	5 cut(s)	19, 73, 351, 559, 607
HpyCH4III	ACNGT	2 cut(s)	467, 749
HpyCH4IV	ACGT	2 cut(s)	87, 738
HpyCH4V	TGCA	6 cut(s)	8, 178, 322, 394, 805, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 266
HpyF3I	CTNAG	2 cut(s)	41, 764
HpySE526I	ACGT	2 cut(s)	87, 738
Hsp92I	GRCGYC	1 cut(s)	738
Hsp92II	CATG	4 cut(s)	326, 367, 573, 721
HspAI	GCGC	3 cut(s)	93, 210, 260
KflI	GGGWCCC	1 cut(s)	838
Ksp22I	TGATCA	1 cut(s)	327
KspI	CCGCGG	1 cut(s)	161
Kzo9I	GATC	7 cut(s)	133, 327, 422, 459, 651, 825, 853
LmnI	GCTCC	2 cut(s)	217, 221
Lsp1109I	GCAGC	3 cut(s)	417, 740, 743
LweI	GCATC	2 cut(s)	187, 868
MaeI	CTAG	3 cut(s)	242, 593, 758
MaeII	ACGT	2 cut(s)	87, 738
MaeIII	GTNAC	2 cut(s)	674, 743
MalI	GATC	7 cut(s)	135, 329, 424, 461, 653, 827, 855
MboI	GATC	7 cut(s)	133, 327, 422, 459, 651, 825, 853
MboII	GAAGA	4 cut(s)	34, 137, 537, 835
MflI	RGATCY	2 cut(s)	422, 825
MhlI	GDGCHC	2 cut(s)	226, 690
MlsI	TGGCCA	1 cut(s)	661
MluCI	AATT	3 cut(s)	400, 504, 783
MluNI	TGGCCA	1 cut(s)	661
MlyI	GAGTC	4 cut(s)	48, 199, 323, 420
MmeI	TCCRAC	2 cut(s)	82, 853
Mox20I	TGGCCA	1 cut(s)	661
MscI	TGGCCA	1 cut(s)	661
MseI	TTAA	3 cut(s)	306, 353, 533
Msp20I	TGGCCA	1 cut(s)	661
MspA1I	CMGCKG	2 cut(s)	160, 734
MspI	CCGG	2 cut(s)	284, 906
MspR9I	CCNGG	4 cut(s)	219, 284, 843, 907
MvaI	CCWGG	2 cut(s)	219, 843
MvnI	CGCG	2 cut(s)	160, 210
MwoI	GCNNNNNNNGC	2 cut(s)	157, 266
NciI	CCSGG	2 cut(s)	284, 907
NcoI	CCATGG	1 cut(s)	717
NdeII	GATC	7 cut(s)	133, 327, 422, 459, 651, 825, 853
NheI	GCTAGC	1 cut(s)	592
NlaIII	CATG	4 cut(s)	326, 367, 573, 721
NlaIV	GGNNCC	3 cut(s)	140, 839, 840
NmeAIII	GCCGAG	1 cut(s)	92
NmuCI	GTSAC	2 cut(s)	674, 743
NspI	RCATGY	1 cut(s)	326
PagI	TCATGA	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	678
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	8 cut(s)	159, 162, 264, 281, 432, 648, 730, 733
PleI	GAGTC	4 cut(s)	48, 199, 322, 419
PpsI	GAGTC	4 cut(s)	48, 199, 322, 419
PpuMI	RGGWCCY	1 cut(s)	838
PshBI	ATTAAT	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	838
Psp6I	CCWGG	2 cut(s)	217, 841
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	2 cut(s)	217, 841
PspN4I	GGNNCC	3 cut(s)	140, 839, 840
PspPI	GGNCC	2 cut(s)	115, 838
PspPPI	RGGWCCY	1 cut(s)	838
PsuI	RGATCY	2 cut(s)	422, 825
SacI	GAGCTC	1 cut(s)	226
SacII	CCGCGG	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	306, 353, 533
SatI	GCNGC	8 cut(s)	158, 161, 263, 280, 431, 647, 729, 732
Sau3AI	GATC	7 cut(s)	133, 327, 422, 459, 651, 825, 853
Sau96I	GGNCC	2 cut(s)	115, 838
SchI	GAGTC	4 cut(s)	48, 199, 323, 420
ScrFI	CCNGG	4 cut(s)	219, 284, 843, 907
SduI	GDGCHC	2 cut(s)	226, 690
SfaNI	GCATC	2 cut(s)	187, 868
Sfr303I	CCGCGG	1 cut(s)	161
SgrBI	CCGCGG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	838
Sse9I	AATT	3 cut(s)	400, 504, 783
SsiI	CCGC	9 cut(s)	76, 103, 155, 158, 160, 263, 280, 646, 734
SspMI	CTAG	3 cut(s)	242, 593, 758
SstI	GAGCTC	1 cut(s)	226
StyD4I	CCNGG	4 cut(s)	217, 282, 841, 905
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	2 cut(s)	467, 749
TaiI	ACGT	2 cut(s)	90, 741
TaqI	TCGA	4 cut(s)	126, 198, 555, 600
TasI	AATT	3 cut(s)	400, 504, 783
TauI	GCSGC	5 cut(s)	160, 163, 265, 282, 649
Tru1I	TTAA	3 cut(s)	306, 353, 533
Tru9I	TTAA	3 cut(s)	306, 353, 533
TscAI	CASTG	1 cut(s)	748
TseFI	GTSAC	2 cut(s)	674, 743
TseI	GCWGC	3 cut(s)	430, 728, 731
Tsp45I	GTSAC	2 cut(s)	674, 743
TspDTI	ATGAA	2 cut(s)	352, 393
TspRI	CASTG	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	838
VspI	ATTAAT	1 cut(s)	306
XceI	RCATGY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XspI	CTAG	3 cut(s)	242, 593, 758
ZraI	GACGTC	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.