Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005943

Physical Location & Seq

Genomic Coordinates Forward (+)

64051562 .. 64052263

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010195

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCTTAGTTTTTCGAATCCTTTGGTGAAGAAAGACGGTGGTGTGGTGCCCTTATTTGTATTAACTTCTGGCAACGAAACCTTCGATGATGGCTTTGTTTCTATGATCGATGGTGATGGCGAGGTTTGTTGGCAGATCGGTTGGCCATCTCCTATCAGTGACGGCGTAGTGCCCTGGCAGGTTCCAACCTTGATGTTTACTGTGGTCGGGGCTGCAGCGGTCGTCGGTGATGGTAGTGGCCAAGTGCTGAGGCCAAATCTAAGCCCAATTGATGGGCTTGAAGTGGTGCAATCCCTAGACCTGTGGAAGATCTGGGTTTGGGACCCAGGTATAGGGTTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.23

Weight (kDa)

4.05

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005943)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004219 RLG00000005084 RLG00000010195 RLG00000013467 RLG00000014305 RLG00000028980 RLG00000030839 RLG00000032541
rosa_multiflora	Rmu_co8333173.1_g000001 Rmu_sc0001609.1_g000028 Rmu_sc0003426.1_g000014 Rmu_sc0010981.1_g000007 Rmu_sc0019815.1_g000001 Rmu_sc0023018.1_g000001 Rmu_ssc0000323.1_g000018
rosa_roxburghii	Rroxscaffold_1G00008410 Rroxscaffold_4G00294860 Rroxscaffold_5G00373940
rosa_samantha	Rh2BG307500 Rh2CG285600 Rh3CG238400 Rh4CG114700 Rh5DG479400 Rh5DG522500 Rh6CG228800 Rh6DG235200 Rh7AG303100 Rh7CG263200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	46
AccB7I	CCANNNNNTGG	1 cut(s)	272
AciI	CCGC	1 cut(s)	218
AcoI	YGGCCR	2 cut(s)	143, 238
AfiI	CCNNNNNNNGG	2 cut(s)	272, 332
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	173, 325
AoxI	GGCC	3 cut(s)	143, 238, 251
ApeKI	GCWGC	2 cut(s)	212, 215
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	3 cut(s)	37, 125, 239
AsuII	TTCGAA	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	322
BaeGI	GKGCMC	2 cut(s)	51, 174
BalI	TGGCCA	2 cut(s)	145, 240
BanI	GGYRCC	1 cut(s)	46
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	199, 227
BccI	CCATC	6 cut(s)	83, 104, 110, 154, 224, 266
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	2 cut(s)	175, 327
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	169
BglII	AGATCT	1 cut(s)	309
BisI	GCNGC	2 cut(s)	213, 216
BlsI	GCNGC	2 cut(s)	214, 217
Bme1390I	CCNGG	2 cut(s)	175, 327
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	4 cut(s)	48, 183, 323, 324
BmrFI	CCNGG	2 cut(s)	175, 327
Bpu10I	CCTNAGC	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	14
Bsa29I	ATCGAT	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	173, 325
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 332
BseBI	CCWGG	2 cut(s)	175, 327
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	173, 325
BseLI	CCNNNNNNNGG	2 cut(s)	272, 332
BseMII	CTCAG	1 cut(s)	239
BseSI	GKGCMC	2 cut(s)	51, 174
BseXI	GCAGC	2 cut(s)	199, 227
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	145, 240, 253
BshNI	GGYRCC	1 cut(s)	46
BshVI	ATCGAT	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	272, 332
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	3 cut(s)	145, 240, 253
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	51, 174
Bsp143I	GATC	3 cut(s)	105, 135, 309
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	3 cut(s)	145, 240, 253
BspCNI	CTCAG	1 cut(s)	240
BspDI	ATCGAT	1 cut(s)	108
BspLI	GGNNCC	4 cut(s)	48, 183, 323, 324
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	169
BspT104I	TTCGAA	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	173, 325
BssMI	GATC	3 cut(s)	105, 135, 309
Bst2UI	CCWGG	2 cut(s)	175, 327
Bst4CI	ACNGT	2 cut(s)	38, 202
BstBI	TTCGAA	1 cut(s)	14
BstDEI	CTNAG	3 cut(s)	5, 248, 260
BstKTI	GATC	3 cut(s)	108, 138, 312
BstMBI	GATC	3 cut(s)	105, 135, 309
BstMCI	CGRYCG	1 cut(s)	222
BstNI	CCWGG	2 cut(s)	175, 327
BstSCI	CCNGG	2 cut(s)	173, 325
BstSFI	CTRYAG	1 cut(s)	213
BstSLI	GKGCMC	2 cut(s)	51, 174
BstV1I	GCAGC	2 cut(s)	199, 227
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	145, 240, 253
BsuTUI	ATCGAT	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	322
ClaI	ATCGAT	1 cut(s)	108
CviJI	RGCY	7 cut(s)	93, 145, 212, 240, 253, 264, 277
CviKI_1	RGCY	7 cut(s)	93, 145, 212, 240, 253, 264, 277
DdeI	CTNAG	3 cut(s)	5, 248, 260
DpnI	GATC	3 cut(s)	107, 137, 311
DpnII	GATC	3 cut(s)	105, 135, 309
EaeI	YGGCCR	2 cut(s)	143, 238
Eco47I	GGWCC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	173, 325
FaiI	YATR	2 cut(s)	104, 332
FaqI	GGGAC	1 cut(s)	335
Fnu4HI	GCNGC	2 cut(s)	213, 216
Fsp4HI	GCNGC	2 cut(s)	213, 216
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	2 cut(s)	213, 216
HaeIII	GGCC	3 cut(s)	145, 240, 253
HinfI	GANTC	1 cut(s)	16
HphI	GGTGA	3 cut(s)	37, 125, 239
Hpy166II	GTNNAC	1 cut(s)	198
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	2 cut(s)	38, 202
HpyCH4V	TGCA	2 cut(s)	215, 289
HpyF3I	CTNAG	3 cut(s)	5, 248, 260
KflI	GGGWCCC	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	105, 135, 309
LpnPI	CCDG	8 cut(s)	54, 160, 164, 187, 298, 312, 314, 339
Lsp1109I	GCAGC	2 cut(s)	199, 227
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	3 cut(s)	107, 137, 311
MboI	GATC	3 cut(s)	105, 135, 309
MboII	GAAGA	2 cut(s)	40, 319
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	2 cut(s)	51, 174
MlsI	TGGCCA	2 cut(s)	145, 240
MluCI	AATT	1 cut(s)	267
MluNI	TGGCCA	2 cut(s)	145, 240
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	2 cut(s)	115, 243
Mox20I	TGGCCA	2 cut(s)	145, 240
MscI	TGGCCA	2 cut(s)	145, 240
MseI	TTAA	1 cut(s)	62
Msp20I	TGGCCA	2 cut(s)	145, 240
MspA1I	CMGCKG	1 cut(s)	218
MspR9I	CCNGG	2 cut(s)	175, 327
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	2 cut(s)	175, 327
NdeII	GATC	3 cut(s)	105, 135, 309
NlaIV	GGNNCC	4 cut(s)	48, 183, 323, 324
NmuCI	GTSAC	1 cut(s)	158
NspV	TTCGAA	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	214, 217
PpuMI	RGGWCCY	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	173, 325
PspGI	CCWGG	2 cut(s)	173, 325
PspN4I	GGNNCC	4 cut(s)	48, 183, 323, 324
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	2 cut(s)	213, 216
Sau3AI	GATC	3 cut(s)	105, 135, 309
Sau96I	GGNCC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	175, 327
SduI	GDGCHC	2 cut(s)	51, 174
SetI	ASST	7 cut(s)	83, 126, 183, 191, 303, 331, 344
SfcI	CTRYAG	1 cut(s)	213
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	1 cut(s)	322
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	173, 325
TaaI	ACNGT	2 cut(s)	38, 202
TaqI	TCGA	3 cut(s)	14, 84, 108
TasI	AATT	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	212, 215
Tsp45I	GTSAC	1 cut(s)	158
TspRI	CASTG	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	322
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.