Rh6DG235200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005943
Physical Location & Seq
Reverse (-)
41952261 .. 41952739
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG235200.1

Sequence Viewer

Length: 363 bp
ATGATGTTGACGGAGGTTGCAGATCGGAGCGAAACAGGACGGCATCGTTTCACCATCTCCTCATCCTCATCTTTCTTCGGCGTTTTCTCCGATCTTGACGCTGATTCAAAGCATATCAGAGAAATCAAATCAGTCACCGGAGGGAATGGCTTCATCGACCACGGTCAGAGTCTCCTCCTTCTACCGCAACGGCCAGATCTTCATCCTTGTCGTCCACAAGATCTGGTATTTCCAGGCGCTGTGATCTCCGCCGGAGACAGCTTTTCCCAAGCTGTGGAGAAAGAGGTGGAGGAGCGTGTTCAGAGGCATTTTTCCAGTGAGATCGAACTGTTGGTTCGACGACGATTATGGCGAGGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.52

Weight (kDa)

6.19

Isoelectric Point (pI)

62.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AciI CCGC 2 cut(s) 185, 249
AcoI YGGCCR 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 1 cut(s) 108
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 261, 272
AluI AGCT 2 cut(s) 261, 272
Alw26I GTCTC 2 cut(s) 176, 249
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 43, 127
BccI CCATC 1 cut(s) 62
BceAI ACGGC 2 cut(s) 56, 206
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 176, 249
BfoI RGCGCY 1 cut(s) 240
BglII AGATCT 2 cut(s) 196, 220
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 52
BoxI GACNNNNGTC 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 62, 202
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 315
BseRI GAGGAG 3 cut(s) 49, 164, 305
BshFI GGCC 1 cut(s) 193
BsiSI CCGG 2 cut(s) 138, 252
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 2 cut(s) 176, 249
BsnI GGCC 1 cut(s) 193
Bsp143I GATC 6 cut(s) 22, 91, 196, 220, 243, 321
BspACI CCGC 2 cut(s) 185, 249
BspANI GGCC 1 cut(s) 193
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 6 cut(s) 22, 91, 196, 220, 243, 321
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 164, 330
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 2 cut(s) 62, 202
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 6 cut(s) 25, 94, 199, 223, 246, 324
BstMAI GTCTC 2 cut(s) 176, 249
BstMBI GATC 6 cut(s) 22, 91, 196, 220, 243, 321
BstNI CCWGG 1 cut(s) 234
BstPAI GACNNNNGTC 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 232
BstX2I RGATCY 2 cut(s) 196, 220
BstYI RGATCY 2 cut(s) 196, 220
BsuRI GGCC 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 62, 202
BtsIMutI CAGTG 1 cut(s) 322
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 1 cut(s) 239
CseI GACGC 1 cut(s) 107
CviJI RGCY 4 cut(s) 150, 193, 261, 272
CviKI_1 RGCY 4 cut(s) 150, 193, 261, 272
DpnI GATC 6 cut(s) 24, 93, 198, 222, 245, 323
DpnII GATC 6 cut(s) 22, 91, 196, 220, 243, 321
EaeI YGGCCR 1 cut(s) 191
EciI GGCGGA 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 232
FaiI YATR 2 cut(s) 114, 349
FokI GGATG 2 cut(s) 49, 189
GlaI GCGC 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 1 cut(s) 193
HapII CCGG 2 cut(s) 138, 252
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 239
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 2 cut(s) 104, 169
HpaII CCGG 2 cut(s) 138, 252
HphI GGTGA 2 cut(s) 43, 127
Hpy166II GTNNAC 2 cut(s) 9, 215
Hpy188I TCNGA 6 cut(s) 27, 91, 119, 168, 303, 362
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 9, 215
Hpy99I CGWCG 2 cut(s) 342, 345
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 164, 330
HpyCH4V TGCA 1 cut(s) 20
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 6 cut(s) 22, 91, 196, 220, 243, 321
LmnI GCTCC 2 cut(s) 27, 292
LpnPI CCDG 8 cut(s) 21, 151, 207, 209, 219, 246, 265, 328
LweI GCATC 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 133
MalI GATC 6 cut(s) 24, 93, 198, 222, 245, 323
MboI GATC 6 cut(s) 22, 91, 196, 220, 243, 321
MboII GAAGA 2 cut(s) 67, 191
MflI RGATCY 2 cut(s) 196, 220
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 9 cut(s) 7, 70, 76, 134, 185, 277, 283, 297, 347
MroXI GAANNNNTTC 1 cut(s) 149
MspI CCGG 2 cut(s) 138, 252
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
NdeII GATC 6 cut(s) 22, 91, 196, 220, 243, 321
NmuCI GTSAC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 104
PflMI CCANNNNNTGG 1 cut(s) 274
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PshAI GACNNNNGTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 2 cut(s) 196, 220
Sau3AI GATC 6 cut(s) 22, 91, 196, 220, 243, 321
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 234
SetI ASST 4 cut(s) 18, 263, 274, 288
SfaNI GCATC 1 cut(s) 52
SsiI CCGC 2 cut(s) 185, 249
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 164, 330
TaqI TCGA 3 cut(s) 156, 324, 337
TfiI GAWTC 1 cut(s) 104
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 142, 191
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 1 cut(s) 322
Van91I CCANNNNNTGG 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.