Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019815.1

Orthogroup ID

OG0005943

Physical Location & Seq

Genomic Coordinates Forward (+)

426 .. 1233

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019815.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgctggtcctcctcaccgtcccagtcagcgatgactctcctcctccaccgctgtccacggctcgccctggatctcaacctctaccacctcatctctcccagcgctccgacctcgacaagcacctctccaatctccagaaatcctcccaggttcttgatatcgtcaagtccgacgccgaccacgtcctctccaacgtctcctccacctgcgacctcgccgaccaagtcagcaccaaggtccgcgagctcgacctcgcccagtcccgcgtcaactccacgctcctccgtttggatgcgattgtggagcatgatctcgcccaacgccggaatctggtcactagtccggtagccggattctggattccggtcatcgattgcctgattcaggtcaccggtcgccggagaccgcggccagccactgatcatcggagcacagcaaggtggaggatgacttctctctctaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

155

Amino Acids

17.13

Weight (kDa)

9.23

Isoelectric Point (pI)

63.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005943)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004219 RLG00000005084 RLG00000010195 RLG00000013467 RLG00000014305 RLG00000028980 RLG00000030839 RLG00000032541
rosa_multiflora	Rmu_co8333173.1_g000001 Rmu_sc0001609.1_g000028 Rmu_sc0003426.1_g000014 Rmu_sc0010981.1_g000007 Rmu_sc0019815.1_g000001 Rmu_sc0023018.1_g000001 Rmu_ssc0000323.1_g000018
rosa_roxburghii	Rroxscaffold_1G00008410 Rroxscaffold_4G00294860 Rroxscaffold_5G00373940
rosa_samantha	Rh2BG307500 Rh2CG285600 Rh3CG238400 Rh4CG114700 Rh5DG479400 Rh5DG522500 Rh6CG228800 Rh6DG235200 Rh7AG303100 Rh7CG263200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	215
AccII	CGCG	3 cut(s)	243, 267, 409
AciI	CCGC	5 cut(s)	50, 241, 265, 407, 409
AclWI	GGATC	1 cut(s)	79
AcoI	YGGCCR	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	174
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	7 cut(s)	289, 324, 331, 350, 357, 385, 399
AgeI	ACCGGT	1 cut(s)	392
AhlI	ACTAGT	1 cut(s)	338
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	67, 147
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	2 cut(s)	249, 434
Alw26I	GTCTC	2 cut(s)	202, 397
AlwI	GGATC	1 cut(s)	79
AlwNI	CAGNNNCTG	1 cut(s)	419
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	1 cut(s)	410
AsiGI	ACCGGT	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	2 cut(s)	7, 238
AsuHPI	GGTGA	2 cut(s)	7, 382
AvaII	GGWCC	2 cut(s)	7, 238
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	249, 434
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	2 cut(s)	69, 149
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	202, 397
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	2 cut(s)	69, 149
Bme18I	GGWCC	2 cut(s)	7, 238
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	7, 238
BmrFI	CCNGG	2 cut(s)	69, 149
BmrI	ACTGGG	2 cut(s)	17, 253
BmsI	GCATC	1 cut(s)	283
BmuI	ACTGGG	2 cut(s)	17, 253
BpmI	CTGGAG	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	5 cut(s)	57, 67, 147, 234, 407
BsaWI	WCCGGW	3 cut(s)	343, 364, 392
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 185, 203, 215
Bsc4I	CCNNNNNNNGG	7 cut(s)	289, 324, 331, 350, 357, 385, 399
Bse118I	RCCGGY	1 cut(s)	392
Bse1I	ACTGG	2 cut(s)	23, 259
BseBI	CCWGG	2 cut(s)	69, 149
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	5 cut(s)	57, 67, 147, 234, 407
BseGI	GGATG	2 cut(s)	298, 453
BseLI	CCNNNNNNNGG	7 cut(s)	289, 324, 331, 350, 357, 385, 399
BseNI	ACTGG	2 cut(s)	23, 259
BseRI	GAGGAG	4 cut(s)	30, 33, 190, 272
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	3 cut(s)	243, 267, 409
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	412
BshTI	ACCGGT	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	372
BsiEI	CGRYCG	1 cut(s)	397
BsiHKAI	GWGCWC	2 cut(s)	249, 434
BsiSI	CCGG	6 cut(s)	325, 344, 351, 365, 393, 400
BslFI	GGGAC	2 cut(s)	5, 247
BslI	CCNNNNNNNGG	7 cut(s)	289, 324, 331, 350, 357, 385, 399
BsmAI	GTCTC	2 cut(s)	202, 397
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	2 cut(s)	5, 247
BsnI	GGCC	1 cut(s)	412
Bso31I	GGTCTC	1 cut(s)	397
Bsp1286I	GDGCHC	2 cut(s)	249, 434
Bsp143I	GATC	3 cut(s)	71, 310, 421
BspACI	CCGC	5 cut(s)	50, 241, 265, 407, 409
BspANI	GGCC	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	372
BspFNI	CGCG	3 cut(s)	243, 267, 409
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	397
BsrFI	RCCGGY	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	23, 259
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	5 cut(s)	57, 67, 147, 234, 407
BssMI	GATC	3 cut(s)	71, 310, 421
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	69, 149
Bst4CI	ACNGT	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	3 cut(s)	64, 245, 414
BstDEI	CTNAG	1 cut(s)	462
BstDSI	CCRYGG	2 cut(s)	57, 407
BstEII	GGTNACC	1 cut(s)	388
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	298, 453
BstFNI	CGCG	3 cut(s)	243, 267, 409
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	74, 313, 424
BstMAI	GTCTC	2 cut(s)	202, 397
BstMBI	GATC	3 cut(s)	71, 310, 421
BstMCI	CGRYCG	1 cut(s)	397
BstNI	CCWGG	2 cut(s)	69, 149
BstPI	GGTNACC	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	67, 147
BstUI	CGCG	3 cut(s)	243, 267, 409
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
Bsu15I	ATCGAT	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	412
BsuTUI	ATCGAT	1 cut(s)	372
BtgI	CCRYGG	2 cut(s)	57, 407
BtgZI	GCGATG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	298, 453
BtsIMutI	CAGTG	1 cut(s)	417
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	3 cut(s)	64, 245, 414
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	2 cut(s)	7, 238
Cfr42I	CCGCGG	1 cut(s)	410
ClaI	ATCGAT	1 cut(s)	372
CseI	GACGC	2 cut(s)	182, 256
CspAI	ACCGGT	1 cut(s)	392
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	5 cut(s)	62, 247, 350, 412, 416
CviKI_1	RGCY	5 cut(s)	62, 247, 350, 412, 416
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	3 cut(s)	73, 312, 423
DpnII	GATC	3 cut(s)	71, 310, 421
EaeI	YGGCCR	1 cut(s)	410
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	397
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	7, 238
Eco47III	AGCGCT	1 cut(s)	104
Eco53kI	GAGCTC	1 cut(s)	247
Eco91I	GGTNACC	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	247
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoO65I	GGTNACC	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	67, 147
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	1 cut(s)	311
FaiI	YATR	1 cut(s)	309
FaqI	GGGAC	2 cut(s)	5, 247
FatI	CATG	1 cut(s)	307
FauI	CCCGC	1 cut(s)	272
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	1 cut(s)	410
FokI	GGATG	2 cut(s)	305, 460
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	410
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	410
GsaI	CCCAGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	6 cut(s)	325, 344, 351, 365, 393, 400
HgaI	GACGC	2 cut(s)	182, 256
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	5 cut(s)	35, 328, 354, 361, 382
HpaII	CCGG	6 cut(s)	325, 344, 351, 365, 393, 400
HphI	GGTGA	2 cut(s)	7, 382
Hpy166II	GTNNAC	2 cut(s)	57, 271
Hpy188I	TCNGA	3 cut(s)	109, 172, 429
Hpy188III	TCNNGA	3 cut(s)	136, 155, 358
Hpy8I	GTNNAC	2 cut(s)	57, 271
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	2 cut(s)	183, 195
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	2 cut(s)	183, 195
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	421
KspI	CCGCGG	1 cut(s)	410
Kzo9I	GATC	3 cut(s)	71, 310, 421
LmnI	GCTCC	4 cut(s)	110, 285, 304, 429
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	2 cut(s)	183, 195
MaeIII	GTNAC	2 cut(s)	334, 388
MalI	GATC	3 cut(s)	73, 312, 423
MboI	GATC	3 cut(s)	71, 310, 421
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	2 cut(s)	249, 434
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	3 cut(s)	132, 195, 216
MspA1I	CMGCKG	2 cut(s)	52, 409
MspI	CCGG	6 cut(s)	325, 344, 351, 365, 393, 400
MspR9I	CCNGG	2 cut(s)	69, 149
MvaI	CCWGG	2 cut(s)	69, 149
MvnI	CGCG	3 cut(s)	243, 267, 409
NdeII	GATC	3 cut(s)	71, 310, 421
NlaIII	CATG	1 cut(s)	311
NmuCI	GTSAC	2 cut(s)	334, 388
PaqCI	CACCTGC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 180
PfeI	GAWTC	4 cut(s)	328, 354, 361, 382
PflFI	GACNNNGTC	2 cut(s)	182, 224
PinAI	ACCGGT	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	411
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	67, 147
PspEI	GGTNACC	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	2 cut(s)	67, 147
PspPI	GGNCC	2 cut(s)	7, 238
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	71
PsyI	GACNNNGTC	2 cut(s)	182, 224
SacI	GAGCTC	1 cut(s)	249
SacII	CCGCGG	1 cut(s)	410
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	3 cut(s)	71, 310, 421
Sau96I	GGNCC	2 cut(s)	7, 238
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	69, 149
SduI	GDGCHC	2 cut(s)	249, 434
SfaNI	GCATC	1 cut(s)	283
Sfr303I	CCGCGG	1 cut(s)	410
SgrBI	CCGCGG	1 cut(s)	410
SinI	GGWCC	2 cut(s)	7, 238
SpeI	ACTAGT	1 cut(s)	338
SsiI	CCGC	5 cut(s)	50, 241, 265, 407, 409
SspMI	CTAG	1 cut(s)	339
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	67, 147
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	2 cut(s)	186, 198
TaqI	TCGA	3 cut(s)	114, 249, 372
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	4 cut(s)	328, 354, 361, 382
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	2 cut(s)	334, 388
Tsp45I	GTSAC	2 cut(s)	334, 388
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	424
Tth111I	GACNNNGTC	2 cut(s)	182, 224
VpaK11BI	GGWCC	2 cut(s)	7, 238
XagI	CCTNNNNNAGG	1 cut(s)	383
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.