Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005943

Physical Location & Seq

Genomic Coordinates Reverse (-)

75677701 .. 75678036

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG479400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCGAAGTTCCGATCGTCAAACGGCGAGCAGATTTCAAACCTGGCCCTAAGCATCTGGTTCTCCACAAGCCGGGAAAGAGTGATCGAGCCTCTCCGCTGTTCGAATTGGTTGTCGAGCTGCCGGGAGAGAGTGATTGAGCCTCTCCACAGTTACAATTCATTGTCGAGATTTCTTATGCGGGCCGGGCTGGAGGCGTTGTGCATCACCGGAGGGAATGGCTTCATCGACCACAGTCAGAGTCTCCTCCATCTTCCGCCGCAACCAGATCGTCATCCTTGTCGTCCACAAGATCTGGTATGCGAGCGTGGGTCGTGGATCTCGTATGCGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.62

Weight (kDa)

8.39

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005943)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004219 RLG00000005084 RLG00000010195 RLG00000013467 RLG00000014305 RLG00000028980 RLG00000030839 RLG00000032541
rosa_multiflora	Rmu_co8333173.1_g000001 Rmu_sc0001609.1_g000028 Rmu_sc0003426.1_g000014 Rmu_sc0010981.1_g000007 Rmu_sc0019815.1_g000001 Rmu_sc0023018.1_g000001 Rmu_ssc0000323.1_g000018
rosa_roxburghii	Rroxscaffold_1G00008410 Rroxscaffold_4G00294860 Rroxscaffold_5G00373940
rosa_samantha	Rh2BG307500 Rh2CG285600 Rh3CG238400 Rh4CG114700 Rh5DG479400 Rh5DG522500 Rh6CG228800 Rh6DG235200 Rh7AG303100 Rh7CG263200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	97, 181, 257, 260
AclWI	GGATC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	39
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	2 cut(s)	45, 183
ApeKI	GCWGC	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
Asp700I	GAANNNNTTC	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	46, 183
AsuC2I	CCSGG	3 cut(s)	74, 125, 187
AsuHPI	GGTGA	1 cut(s)	199
AsuII	TTCGAA	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	1 cut(s)	44
BcnI	CCSGG	3 cut(s)	74, 125, 187
BcoDI	GTCTC	1 cut(s)	248
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	2 cut(s)	121, 260
BlsI	GCNGC	2 cut(s)	122, 261
Bme1390I	CCNGG	4 cut(s)	44, 74, 125, 187
BmgT120I	GGNCC	2 cut(s)	46, 183
BmrFI	CCNGG	4 cut(s)	44, 74, 125, 187
BmsI	GCATC	2 cut(s)	63, 213
BoxI	GACNNNNGTC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	50
Bpu14I	TTCGAA	1 cut(s)	104
BpuMI	CCSGG	3 cut(s)	74, 125, 187
BsaBI	GATNNNNATC	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	47, 185
BsiEI	CGRYCG	1 cut(s)	17
BsiSI	CCGG	4 cut(s)	73, 124, 186, 210
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	47, 185
Bsp119I	TTCGAA	1 cut(s)	104
Bsp143I	GATC	5 cut(s)	14, 84, 268, 292, 318
BspACI	CCGC	4 cut(s)	97, 181, 257, 260
BspANI	GGCC	2 cut(s)	47, 185
BspPI	GGATC	1 cut(s)	326
BspT104I	TTCGAA	1 cut(s)	104
BssMI	GATC	5 cut(s)	14, 84, 268, 292, 318
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	2 cut(s)	152, 236
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	29, 183, 305
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	5 cut(s)	17, 87, 271, 295, 321
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	5 cut(s)	14, 84, 268, 292, 318
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	44
BstPAI	GACNNNNGTC	1 cut(s)	234
BstSCI	CCNGG	4 cut(s)	42, 72, 123, 185
BstV1I	GCAGC	1 cut(s)	107
BstX2I	RGATCY	2 cut(s)	292, 318
BstYI	RGATCY	2 cut(s)	292, 318
BsuRI	GGCC	2 cut(s)	47, 185
BtsCI	GGATG	1 cut(s)	274
Cac8I	GCNNGC	3 cut(s)	29, 183, 305
Cfr13I	GGNCC	2 cut(s)	46, 183
CviJI	RGCY	8 cut(s)	47, 72, 91, 120, 142, 185, 190, 222
CviKI_1	RGCY	8 cut(s)	47, 72, 91, 120, 142, 185, 190, 222
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	5 cut(s)	16, 86, 270, 294, 320
DpnII	GATC	5 cut(s)	14, 84, 268, 292, 318
EciI	GGCGGA	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	42
FaiI	YATR	3 cut(s)	179, 301, 327
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	121, 260
FokI	GGATG	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	121, 260
GluI	GCNGC	2 cut(s)	121, 260
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	47, 185
HapII	CCGG	4 cut(s)	73, 124, 186, 210
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	4 cut(s)	73, 124, 186, 210
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	14, 240
Hpy188III	TCNNGA	1 cut(s)	168
Hpy8I	GTNNAC	1 cut(s)	287
HpyCH4III	ACNGT	2 cut(s)	152, 236
HpyCH4V	TGCA	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	50
Kzo9I	GATC	5 cut(s)	14, 84, 268, 292, 318
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	2 cut(s)	63, 213
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	5 cut(s)	16, 86, 270, 294, 320
MboI	GATC	5 cut(s)	14, 84, 268, 292, 318
MboII	GAAGA	1 cut(s)	245
MflI	RGATCY	2 cut(s)	292, 318
MluCI	AATT	2 cut(s)	106, 157
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	5 cut(s)	102, 153, 187, 206, 257
MroXI	GAANNNNTTC	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	4 cut(s)	73, 124, 186, 210
MspR9I	CCNGG	4 cut(s)	44, 74, 125, 187
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	3 cut(s)	74, 125, 187
NdeII	GATC	5 cut(s)	14, 84, 268, 292, 318
NspV	TTCGAA	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	122, 261
Ple19I	CGATCG	1 cut(s)	17
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PshAI	GACNNNNGTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	46, 183
PsuI	RGATCY	2 cut(s)	292, 318
PvuI	CGATCG	1 cut(s)	17
SatI	GCNGC	2 cut(s)	121, 260
Sau3AI	GATC	5 cut(s)	14, 84, 268, 292, 318
Sau96I	GGNCC	2 cut(s)	46, 183
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	4 cut(s)	44, 74, 125, 187
SetI	ASST	2 cut(s)	45, 122
SfaNI	GCATC	2 cut(s)	63, 213
SfuI	TTCGAA	1 cut(s)	104
Sse9I	AATT	2 cut(s)	106, 157
SsiI	CCGC	4 cut(s)	97, 181, 257, 260
StyD4I	CCNGG	4 cut(s)	42, 72, 123, 185
TaaI	ACNGT	2 cut(s)	152, 236
TaqI	TCGA	5 cut(s)	87, 104, 116, 167, 228
TasI	AATT	2 cut(s)	106, 157
TauI	GCSGC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	2 cut(s)	150, 214
XmnI	GAANNNNTTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.