RLG00000005084

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005943
Physical Location & Seq
Forward (+)
64874927 .. 64875462
536 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005084

Sequence Viewer

Length: 384 bp
ATGCTCGCTCTCTTGATACTTCTGATCTCCTTTTCTTTGGGGTTCGATGTGTGGAAGGCATGGCTTCACAATGGGGATTGGTGGACCTTCGATGACAGCTTTGTTTCTATGATCGATGGTGATGGTGAGATTTGGCGGCAGATCGGTTGGTCATCTCCTATCGGTGACTGCGTTGTGCCCTGGCAGGTTCCGACCTTGATGTTTACCATGGTCGGGGCAGACGTCGGTGATGGTAGTGGCCAAGTGCTGAGGCCAAGTCTAAGCCCAATTGATGGGCTTGAAGTGGTGCAATCTCGAGACCTGTGGAAGATCTGGGCTTGGGACCCAGGTTCAAGGCAGTGGACTGGTGGTTTGGGATTGTCTTTGGCCTATTGCGTTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.13

Weight (kDa)

4.13

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 272
AciI CCGC 1 cut(s) 136
AcoI YGGCCR 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 213, 272
AgsI TTSAA 2 cut(s) 281, 333
AjnI CCWGG 2 cut(s) 179, 325
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 291
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 3 cut(s) 238, 251, 366
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AspS9I GGNCC 2 cut(s) 84, 322
AsuHPI GGTGA 4 cut(s) 131, 137, 176, 239
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 2 cut(s) 84, 322
BaeGI GKGCMC 1 cut(s) 180
BalI TGGCCA 1 cut(s) 240
BbvCI CCTCAGC 1 cut(s) 248
BccI CCATC 4 cut(s) 110, 116, 224, 266
BciT130I CCWGG 2 cut(s) 181, 327
BcoDI GTCTC 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 175
BglII AGATCT 1 cut(s) 309
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme1390I CCNGG 2 cut(s) 181, 327
Bme18I GGWCC 2 cut(s) 84, 322
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 84, 322
BmiI GGNNCC 3 cut(s) 189, 323, 324
BmrFI CCNGG 2 cut(s) 181, 327
Bpu10I CCTNAGC 1 cut(s) 248
Bsa29I ATCGAT 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 179, 207, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 272
Bse1I ACTGG 1 cut(s) 349
BseBI CCWGG 2 cut(s) 181, 327
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 179, 207, 325
BseLI CCNNNNNNNGG 2 cut(s) 213, 272
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 349
BseSI GKGCMC 1 cut(s) 180
BshFI GGCC 3 cut(s) 240, 253, 368
BshVI ATCGAT 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 213, 272
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 3 cut(s) 240, 253, 368
Bso31I GGTCTC 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 4 cut(s) 24, 111, 141, 309
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 1 cut(s) 136
BspANI GGCC 3 cut(s) 240, 253, 368
BspCNI CTCAG 1 cut(s) 240
BspDI ATCGAT 1 cut(s) 114
BspLI GGNNCC 3 cut(s) 189, 323, 324
BspMI ACCTGC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 291
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 3 cut(s) 179, 207, 325
BssMI GATC 4 cut(s) 24, 111, 141, 309
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 181, 327
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 248, 260
BstDSI CCRYGG 1 cut(s) 207
BstKTI GATC 4 cut(s) 27, 114, 144, 312
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 4 cut(s) 24, 111, 141, 309
BstNI CCWGG 2 cut(s) 181, 327
BstSCI CCNGG 2 cut(s) 179, 325
BstSLI GKGCMC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
Bsu15I ATCGAT 1 cut(s) 114
BsuRI GGCC 3 cut(s) 240, 253, 368
BsuTUI ATCGAT 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 344
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 84, 322
ClaI ATCGAT 1 cut(s) 114
CviAII CATG 2 cut(s) 60, 208
CviJI RGCY 8 cut(s) 64, 99, 240, 253, 264, 277, 317, 368
CviKI_1 RGCY 8 cut(s) 64, 99, 240, 253, 264, 277, 317, 368
DdeI CTNAG 2 cut(s) 248, 260
DpnI GATC 4 cut(s) 26, 113, 143, 311
DpnII GATC 4 cut(s) 24, 111, 141, 309
EaeI YGGCCR 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 84, 322
Eco88I CYCGRG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 2 cut(s) 179, 325
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 2 cut(s) 63, 211
FaiI YATR 3 cut(s) 61, 110, 209
FaqI GGGAC 1 cut(s) 335
FatI CATG 2 cut(s) 59, 207
Fnu4HI GCNGC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 137
GluI GCNGC 1 cut(s) 137
HaeIII GGCC 3 cut(s) 240, 253, 368
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 2 cut(s) 63, 211
HphI GGTGA 4 cut(s) 131, 137, 176, 239
Hpy166II GTNNAC 3 cut(s) 84, 204, 342
Hpy188I TCNGA 2 cut(s) 24, 192
Hpy188III TCNNGA 4 cut(s) 13, 294, 296, 381
Hpy8I GTNNAC 3 cut(s) 84, 204, 342
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 49, 97
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 289
HpyF3I CTNAG 2 cut(s) 248, 260
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 2 cut(s) 63, 211
KflI GGGWCCC 1 cut(s) 322
Kzo9I GATC 4 cut(s) 24, 111, 141, 309
LpnPI CCDG 8 cut(s) 166, 170, 193, 298, 312, 314, 330, 339
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 164
MalI GATC 4 cut(s) 26, 113, 143, 311
MboI GATC 4 cut(s) 24, 111, 141, 309
MboII GAAGA 1 cut(s) 319
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 240
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 1 cut(s) 243
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 240
MspR9I CCNGG 2 cut(s) 181, 327
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 2 cut(s) 181, 327
NcoI CCATGG 1 cut(s) 207
NdeII GATC 4 cut(s) 24, 111, 141, 309
NlaIII CATG 2 cut(s) 63, 211
NlaIV GGNNCC 3 cut(s) 189, 323, 324
NmuCI GTSAC 1 cut(s) 164
PaeR7I CTCGAG 1 cut(s) 294
PcsI WCGNNNNNNNCGW 2 cut(s) 168, 219
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 2 cut(s) 179, 325
PspGI CCWGG 2 cut(s) 179, 325
PspN4I GGNNCC 3 cut(s) 189, 323, 324
PspPI GGNCC 2 cut(s) 84, 322
PspPPI RGGWCCY 1 cut(s) 322
PsuI RGATCY 1 cut(s) 309
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 4 cut(s) 24, 111, 141, 309
Sau96I GGNCC 2 cut(s) 84, 322
ScrFI CCNGG 2 cut(s) 181, 327
SduI GDGCHC 1 cut(s) 180
SetI ASST 7 cut(s) 89, 101, 189, 197, 225, 303, 331
Sfr274I CTCGAG 1 cut(s) 294
SinI GGWCC 2 cut(s) 84, 322
SlaI CTCGAG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
Sse9I AATT 1 cut(s) 267
SsiI CCGC 1 cut(s) 136
StyD4I CCNGG 2 cut(s) 179, 325
StyI CCWWGG 1 cut(s) 207
TaiI ACGT 1 cut(s) 225
TaqI TCGA 4 cut(s) 45, 90, 114, 295
TasI AATT 1 cut(s) 267
TauI GCSGC 1 cut(s) 139
TscAI CASTG 1 cut(s) 344
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspRI CASTG 1 cut(s) 344
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 84, 322
XhoI CTCGAG 1 cut(s) 294
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.