Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023018.1

Orthogroup ID

OG0005943

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1047

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023018.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 632 bp

ctggtcctcctcaccgtcccagtcagcgacgactctcctcctccgccgcagtccacggctcgccctggatctcaacctcgaccacctcctctctcccagtgctccgacctcgataagcacctctgcaatctccaaaaatcctcccaggtcctcgacatcatcaagtccgacgccgaccatgtcctctccaacgtctcctccacccgcgacctcgccgaccacgtcagctccaagatccgcaacctctccaatctccagaaatcctcccaggtcctcgacatcgtcaagtccaacgccgaccacgtcctctccaacgtctcctccacctgcgacctcgccaaccacgtcagtgccaagatccgcgacctcgccgaccacatctgcgccaaggtccgcgagcttgacctcgcccagtcgcgcatcaactccacgctcctccgtttggatgcgattgtggagcttgacctcgcccagtctcgtggttctgatttttttttgtcgagtcaccggattccggtgaccggtcgctggattccgatcatcagttaccggattcaagtcaccggtagccggagtcctgtcatcggtagccggagaccgcggccggccactggtcaccggagcacagcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

210

Amino Acids

22.87

Weight (kDa)

9.26

Isoelectric Point (pI)

55.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005943)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004219 RLG00000005084 RLG00000010195 RLG00000013467 RLG00000014305 RLG00000028980 RLG00000030839 RLG00000032541
rosa_multiflora	Rmu_co8333173.1_g000001 Rmu_sc0001609.1_g000028 Rmu_sc0003426.1_g000014 Rmu_sc0010981.1_g000007 Rmu_sc0019815.1_g000001 Rmu_sc0023018.1_g000001 Rmu_ssc0000323.1_g000018
rosa_roxburghii	Rroxscaffold_1G00008410 Rroxscaffold_4G00294860 Rroxscaffold_5G00373940
rosa_samantha	Rh2BG307500 Rh2CG285600 Rh3CG238400 Rh4CG114700 Rh5DG479400 Rh5DG522500 Rh6CG228800 Rh6DG235200 Rh7AG303100 Rh7CG263200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	335
Acc36I	ACCTGC	1 cut(s)	335
AccII	CGCG	5 cut(s)	207, 363, 396, 418, 601
AciI	CCGC	8 cut(s)	44, 47, 205, 238, 361, 394, 599, 601
AclWI	GGATC	3 cut(s)	76, 229, 352
AcoI	YGGCCR	2 cut(s)	602, 606
AcyI	GRCGYC	1 cut(s)	171
AfiI	CCNNNNNNNGG	7 cut(s)	442, 514, 521, 528, 570, 584, 611
AgeI	ACCGGT	2 cut(s)	521, 563
AgsI	TTSAA	1 cut(s)	557
AjiI	CACGTC	3 cut(s)	223, 304, 346
AjnI	CCWGG	3 cut(s)	64, 144, 267
AleI	CACNNNNGTG	1 cut(s)	348
AluBI	AGCT	3 cut(s)	228, 400, 460
AluI	AGCT	3 cut(s)	228, 400, 460
Alw21I	GWGCWC	2 cut(s)	104, 626
Alw26I	GTCTC	4 cut(s)	199, 322, 480, 589
AlwI	GGATC	3 cut(s)	76, 229, 352
AoxI	GGCC	2 cut(s)	602, 606
AsiGI	ACCGGT	2 cut(s)	521, 563
AspLEI	GCGC	2 cut(s)	386, 420
AspS9I	GGNCC	4 cut(s)	4, 148, 271, 391
AsuHPI	GGTGA	5 cut(s)	4, 497, 529, 553, 608
AvaII	GGWCC	4 cut(s)	4, 148, 271, 391
BauI	CACGAG	1 cut(s)	477
Bbv12I	GWGCWC	2 cut(s)	104, 626
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	3 cut(s)	66, 146, 269
BcoDI	GTCTC	4 cut(s)	199, 322, 480, 589
BfuAI	ACCTGC	1 cut(s)	335
BisI	GCNGC	2 cut(s)	47, 602
BlsI	GCNGC	2 cut(s)	48, 603
Bme1390I	CCNGG	3 cut(s)	66, 146, 269
Bme18I	GGWCC	4 cut(s)	4, 148, 271, 391
BmgBI	CACGTC	3 cut(s)	223, 304, 346
BmgT120I	GGNCC	4 cut(s)	4, 148, 271, 391
BmrFI	CCNGG	3 cut(s)	66, 146, 269
BmrI	ACTGGG	4 cut(s)	14, 91, 406, 466
BmsI	GCATC	2 cut(s)	429, 436
BmuI	ACTGGG	4 cut(s)	14, 91, 406, 466
BpmI	CTGGAG	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	536
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	6 cut(s)	54, 64, 144, 267, 387, 599
BsaWI	WCCGGW	6 cut(s)	507, 514, 521, 549, 563, 618
BsaXI	ACNNNNNCTCC	8 cut(s)	182, 212, 212, 242, 293, 305, 323, 335
Bsc4I	CCNNNNNNNGG	7 cut(s)	442, 514, 521, 528, 570, 584, 611
Bse118I	RCCGGY	3 cut(s)	521, 563, 604
Bse1I	ACTGG	5 cut(s)	20, 97, 412, 472, 616
Bse8I	GATNNNNATC	1 cut(s)	536
BseBI	CCWGG	3 cut(s)	66, 146, 269
BseDI	CCNNGG	6 cut(s)	54, 64, 144, 267, 387, 599
BseGI	GGATG	1 cut(s)	451
BseJI	GATNNNNATC	1 cut(s)	536
BseLI	CCNNNNNNNGG	7 cut(s)	442, 514, 521, 528, 570, 584, 611
BseNI	ACTGG	5 cut(s)	20, 97, 412, 472, 616
BseRI	GAGGAG	6 cut(s)	27, 30, 78, 187, 310, 425
BseX3I	CGGCCG	1 cut(s)	602
Bsh1236I	CGCG	5 cut(s)	207, 363, 396, 418, 601
Bsh1285I	CGRYCG	2 cut(s)	526, 605
BshFI	GGCC	2 cut(s)	604, 608
BshTI	ACCGGT	2 cut(s)	521, 563
BsiEI	CGRYCG	2 cut(s)	526, 605
BsiHKAI	GWGCWC	2 cut(s)	104, 626
BsiSI	CCGG	9 cut(s)	508, 515, 522, 550, 564, 571, 592, 605, 619
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	7 cut(s)	442, 514, 521, 528, 570, 584, 611
BsmAI	GTCTC	4 cut(s)	199, 322, 480, 589
BsmBI	CGTCTC	2 cut(s)	199, 322
BsmFI	GGGAC	1 cut(s)	2
BsnI	GGCC	2 cut(s)	604, 608
Bso31I	GGTCTC	1 cut(s)	589
Bsp1286I	GDGCHC	2 cut(s)	104, 626
Bsp143I	GATC	4 cut(s)	68, 234, 357, 537
BspACI	CCGC	8 cut(s)	44, 47, 205, 238, 361, 394, 599, 601
BspANI	GGCC	2 cut(s)	604, 608
BspFNI	CGCG	5 cut(s)	207, 363, 396, 418, 601
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	3 cut(s)	76, 229, 352
BspTNI	GGTCTC	1 cut(s)	589
BsrFI	RCCGGY	3 cut(s)	521, 563, 604
BsrI	ACTGG	5 cut(s)	20, 97, 412, 472, 616
BssAI	RCCGGY	3 cut(s)	521, 563, 604
BssECI	CCNNGG	6 cut(s)	54, 64, 144, 267, 387, 599
BssMI	GATC	4 cut(s)	68, 234, 357, 537
BssNI	GRCGYC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	477
Bst2UI	CCWGG	3 cut(s)	66, 146, 269
Bst4CI	ACNGT	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	61, 398, 606
BstDSI	CCRYGG	2 cut(s)	54, 599
BstEII	GGTNACC	2 cut(s)	517, 614
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	5 cut(s)	207, 363, 396, 418, 601
BstHHI	GCGC	2 cut(s)	386, 420
BstKTI	GATC	4 cut(s)	71, 237, 360, 540
BstMAI	GTCTC	4 cut(s)	199, 322, 480, 589
BstMBI	GATC	4 cut(s)	68, 234, 357, 537
BstMCI	CGRYCG	2 cut(s)	526, 605
BstNI	CCWGG	3 cut(s)	66, 146, 269
BstPI	GGTNACC	2 cut(s)	517, 614
BstSCI	CCNGG	3 cut(s)	64, 144, 267
BstUI	CGCG	5 cut(s)	207, 363, 396, 418, 601
BstX2I	RGATCY	3 cut(s)	68, 234, 357
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	3 cut(s)	68, 234, 357
BstZI	CGGCCG	1 cut(s)	602
BsuRI	GGCC	2 cut(s)	604, 608
BtgI	CCRYGG	2 cut(s)	54, 599
BtrI	CACGTC	3 cut(s)	223, 304, 346
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	3 cut(s)	104, 355, 609
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	3 cut(s)	61, 398, 606
CfoI	GCGC	2 cut(s)	386, 420
Cfr10I	RCCGGY	3 cut(s)	521, 563, 604
Cfr13I	GGNCC	4 cut(s)	4, 148, 271, 391
Cfr42I	CCGCGG	1 cut(s)	602
CseI	GACGC	1 cut(s)	179
CspAI	ACCGGT	2 cut(s)	521, 563
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	8 cut(s)	59, 228, 400, 460, 570, 591, 604, 608
CviKI_1	RGCY	8 cut(s)	59, 228, 400, 460, 570, 591, 604, 608
DpnI	GATC	4 cut(s)	70, 236, 359, 539
DpnII	GATC	4 cut(s)	68, 234, 357, 537
EaeI	YGGCCR	2 cut(s)	602, 606
EagI	CGGCCG	1 cut(s)	602
EciI	GGCGGA	1 cut(s)	33
EclXI	CGGCCG	1 cut(s)	602
Eco130I	CCWWGG	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	589
Eco47I	GGWCC	4 cut(s)	4, 148, 271, 391
Eco52I	CGGCCG	1 cut(s)	602
Eco91I	GGTNACC	2 cut(s)	517, 614
EcoO109I	RGGNCCY	2 cut(s)	148, 271
EcoO65I	GGTNACC	2 cut(s)	517, 614
EcoRII	CCWGG	3 cut(s)	64, 144, 267
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
Esp3I	CGTCTC	2 cut(s)	199, 322
FaeI	CATG	1 cut(s)	182
FaiI	YATR	1 cut(s)	180
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	1 cut(s)	178
FauI	CCCGC	1 cut(s)	212
Fnu4HI	GCNGC	2 cut(s)	47, 602
FokI	GGATG	1 cut(s)	458
FseI	GGCCGGCC	1 cut(s)	608
Fsp4HI	GCNGC	2 cut(s)	47, 602
GlaI	GCGC	2 cut(s)	385, 419
GluI	GCNGC	2 cut(s)	47, 602
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	604, 608
HapII	CCGG	9 cut(s)	508, 515, 522, 550, 564, 571, 592, 605, 619
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	2 cut(s)	386, 420
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	182
Hin6I	GCGC	2 cut(s)	384, 418
HinP1I	GCGC	2 cut(s)	384, 418
HinfI	GANTC	6 cut(s)	32, 502, 511, 532, 553, 574
HpaII	CCGG	9 cut(s)	508, 515, 522, 550, 564, 571, 592, 605, 619
HphI	GGTGA	5 cut(s)	4, 497, 529, 553, 608
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	4 cut(s)	106, 169, 487, 537
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	2 cut(s)	32, 173
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	5 cut(s)	192, 222, 303, 315, 345
HpyCH4V	TGCA	1 cut(s)	126
HpySE526I	ACGT	5 cut(s)	192, 222, 303, 315, 345
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	182
HspAI	GCGC	2 cut(s)	384, 418
KroI	GCCGGC	1 cut(s)	604
KroNI	GCCGGC	1 cut(s)	606
KspI	CCGCGG	1 cut(s)	602
Kzo9I	GATC	4 cut(s)	68, 234, 357, 537
LmnI	GCTCC	5 cut(s)	107, 233, 438, 457, 621
LweI	GCATC	2 cut(s)	429, 436
MaeII	ACGT	5 cut(s)	192, 222, 303, 315, 345
MaeIII	GTNAC	5 cut(s)	503, 517, 545, 559, 614
MalI	GATC	4 cut(s)	70, 236, 359, 539
MboI	GATC	4 cut(s)	68, 234, 357, 537
MflI	RGATCY	3 cut(s)	68, 234, 357
MhlI	GDGCHC	2 cut(s)	104, 626
MlyI	GAGTC	3 cut(s)	26, 511, 583
MmeI	TCCRAC	5 cut(s)	129, 192, 213, 315, 336
MroNI	GCCGGC	1 cut(s)	604
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	9 cut(s)	508, 515, 522, 550, 564, 571, 592, 605, 619
MspR9I	CCNGG	3 cut(s)	66, 146, 269
MvaI	CCWGG	3 cut(s)	66, 146, 269
MvnI	CGCG	5 cut(s)	207, 363, 396, 418, 601
NaeI	GCCGGC	1 cut(s)	606
NdeII	GATC	4 cut(s)	68, 234, 357, 537
NgoMIV	GCCGGC	1 cut(s)	604
NlaIII	CATG	1 cut(s)	182
NmuCI	GTSAC	4 cut(s)	503, 517, 559, 614
OliI	CACNNNNGTG	1 cut(s)	348
PaqCI	CACCTGC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 300, 342
PdiI	GCCGGC	1 cut(s)	606
PfeI	GAWTC	3 cut(s)	511, 532, 553
PflFI	GACNNNGTC	4 cut(s)	179, 221, 281, 302
PinAI	ACCGGT	2 cut(s)	521, 563
PkrI	GCNGC	2 cut(s)	48, 603
PleI	GAGTC	3 cut(s)	26, 510, 582
PpsI	GAGTC	3 cut(s)	26, 510, 582
PpuMI	RGGWCCY	2 cut(s)	148, 271
Psp5II	RGGWCCY	2 cut(s)	148, 271
Psp6I	CCWGG	3 cut(s)	64, 144, 267
PspEI	GGTNACC	2 cut(s)	517, 614
PspGI	CCWGG	3 cut(s)	64, 144, 267
PspPI	GGNCC	4 cut(s)	4, 148, 271, 391
PspPPI	RGGWCCY	2 cut(s)	148, 271
PsuI	RGATCY	3 cut(s)	68, 234, 357
PsyI	GACNNNGTC	4 cut(s)	179, 221, 281, 302
RigI	GGCCGGCC	1 cut(s)	608
RseI	CAYNNNNRTG	1 cut(s)	348
SacII	CCGCGG	1 cut(s)	602
SatI	GCNGC	2 cut(s)	47, 602
Sau3AI	GATC	4 cut(s)	68, 234, 357, 537
Sau96I	GGNCC	4 cut(s)	4, 148, 271, 391
SchI	GAGTC	3 cut(s)	26, 511, 583
ScrFI	CCNGG	3 cut(s)	66, 146, 269
SduI	GDGCHC	2 cut(s)	104, 626
SfaNI	GCATC	2 cut(s)	429, 436
Sfr303I	CCGCGG	1 cut(s)	602
SgrBI	CCGCGG	1 cut(s)	602
SinI	GGWCC	4 cut(s)	4, 148, 271, 391
SmiMI	CAYNNNNRTG	1 cut(s)	348
SsiI	CCGC	8 cut(s)	44, 47, 205, 238, 361, 394, 599, 601
StyD4I	CCNGG	3 cut(s)	64, 144, 267
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	5 cut(s)	195, 225, 306, 318, 348
TaqI	TCGA	5 cut(s)	79, 111, 153, 276, 500
TauI	GCSGC	2 cut(s)	49, 604
TfiI	GAWTC	3 cut(s)	511, 532, 553
TscAI	CASTG	3 cut(s)	104, 355, 616
TseFI	GTSAC	4 cut(s)	503, 517, 559, 614
Tsp45I	GTSAC	4 cut(s)	503, 517, 559, 614
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	3 cut(s)	104, 355, 616
Tth111I	GACNNNGTC	4 cut(s)	179, 221, 281, 302
VpaK11BI	GGWCC	4 cut(s)	4, 148, 271, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.