RLG00000028980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005943
Physical Location & Seq
Forward (+)
31017600 .. 31018247
648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028980

Sequence Viewer

Length: 318 bp
ATGGCTTCATCAACCACGGTCAGAGTCTCCTCCATCTTCCACAACGGCCAGATCGTCATCCTTGTCGTCCACAAGATCTGGTATGTGAGTGCGGGTAGTGGATTTGTTCCAGGCGCTGTGATCTCCGCCGGAGACAGCTTTTCCCAAGCTGTGGAGAAGGAGGTGGAGGAGCGTGTTCAGAGTCATTTTTCCGGTGAGATCGAACTGTTGGTGCCGAGAGAATGGGACAAGCTATTTGTGTCCATTATGTATGTGGAAATTGGGAAGACGATTGCTAAGTCGAGCAAAGCAGCGGTGCGAAATGGGAATTGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NT-C2

Protein Analysis

106

Amino Acids

11.44

Weight (kDa)

6.82

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccB7I CCANNNNNTGG 1 cut(s) 151
AciI CCGC 3 cut(s) 92, 126, 293
AcoI YGGCCR 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 151
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 3 cut(s) 138, 149, 232
AluI AGCT 3 cut(s) 138, 149, 232
Alw26I GTCTC 2 cut(s) 31, 126
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 290
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 206
BanI GGYRCC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 302
BccI CCATC 1 cut(s) 41
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 31, 126
BfoI RGCGCY 1 cut(s) 117
BglII AGATCT 1 cut(s) 75
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 56
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 57
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 151
BseRI GAGGAG 2 cut(s) 19, 182
BseXI GCAGC 1 cut(s) 302
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 211
BsiSI CCGG 2 cut(s) 129, 192
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 2 cut(s) 31, 126
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 48
Bsp143I GATC 4 cut(s) 51, 75, 120, 198
BspACI CCGC 3 cut(s) 92, 126, 293
BspANI GGCC 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 4 cut(s) 51, 75, 120, 198
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 19, 207
BstDEI CTNAG 1 cut(s) 276
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 4 cut(s) 54, 78, 123, 201
BstMAI GTCTC 2 cut(s) 31, 126
BstMBI GATC 4 cut(s) 51, 75, 120, 198
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 116
CfoI GCGC 1 cut(s) 116
CviJI RGCY 5 cut(s) 5, 48, 138, 149, 232
CviKI_1 RGCY 5 cut(s) 5, 48, 138, 149, 232
DdeI CTNAG 1 cut(s) 276
DpnI GATC 4 cut(s) 53, 77, 122, 200
DpnII GATC 4 cut(s) 51, 75, 120, 198
EaeI YGGCCR 1 cut(s) 46
EciI GGCGGA 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 109
FaiI YATR 3 cut(s) 84, 248, 252
FaqI GGGAC 1 cut(s) 239
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 291
GlaI GCGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 291
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 48
HapII CCGG 2 cut(s) 129, 192
HhaI GCGC 1 cut(s) 116
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 2 cut(s) 24, 181
HpaII CCGG 2 cut(s) 129, 192
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 23, 180
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 19, 207
HpyF3I CTNAG 1 cut(s) 276
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 4 cut(s) 51, 75, 120, 198
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 6 cut(s) 62, 64, 96, 123, 142, 205
Lsp1109I GCAGC 1 cut(s) 302
MalI GATC 4 cut(s) 53, 77, 122, 200
MboI GATC 4 cut(s) 51, 75, 120, 198
MboII GAAGA 2 cut(s) 28, 277
MflI RGATCY 1 cut(s) 75
MluCI AATT 2 cut(s) 258, 307
MlyI GAGTC 2 cut(s) 33, 190
MnlI CCTC 3 cut(s) 40, 154, 160
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 2 cut(s) 129, 192
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NdeII GATC 4 cut(s) 51, 75, 120, 198
NlaIV GGNNCC 1 cut(s) 213
NmeAIII GCCGAG 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 1 cut(s) 292
PleI GAGTC 2 cut(s) 32, 189
PpsI GAGTC 2 cut(s) 32, 189
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 213
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 75
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 4 cut(s) 51, 75, 120, 198
SchI GAGTC 2 cut(s) 33, 190
ScrFI CCNGG 1 cut(s) 111
SetI ASST 4 cut(s) 140, 151, 165, 234
Sse9I AATT 2 cut(s) 258, 307
SsiI CCGC 3 cut(s) 92, 126, 293
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 19, 207
TaqI TCGA 2 cut(s) 201, 281
TasI AATT 2 cut(s) 258, 307
TseI GCWGC 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.