Rh2CG285600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005943
Physical Location & Seq
Forward (+)
32019375 .. 32020236
862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG285600.1

Sequence Viewer

Length: 426 bp
ATGCGGCTCTGGCCCCCCTCCCCCTCCCCCTACTGGTGTTTTCCATCAATCTACCGTGGACATCCTCCACGATTTATTCGATGCTTGACGGCAATTAGGACGCTTGCTCTCTTGATACTTCTGATCTCCTTTTCTTCAGGGTTCAATGTGTGGAAAGCATGTCTTCACAATCGGGATTGGCTAACCTTCGACGGCGGCTTTGTTTATATGAAATATGGTGATGGCGAGGATTGGCGGCAGATCGGTTGGCCATCTCCTATCGGTGACTGCGTTGTGCCCTGGCAGGTTCCGACCTTGATGTTTACCATGGTCGGGGCTGCAGCGGACGTCGGTGATGGTAGTGGCCAAGTGCTGAGGCCAAATCTAAGCCCAATTGATGGGCTTGAAGTGGTGCAATCCCGAGACCTGTGGAAGAGTTGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.0

Weight (kDa)

7.68

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 330
Acc36I ACCTGC 1 cut(s) 274
AccB7I CCANNNNNTGG 1 cut(s) 377
AciI CCGC 4 cut(s) 4, 195, 235, 323
AcoI YGGCCR 2 cut(s) 248, 343
AcuI CTGAAG 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 327
AfiI CCNNNNNNNGG 3 cut(s) 33, 312, 377
AgsI TTSAA 2 cut(s) 145, 386
AjnI CCWGG 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 396
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 4 cut(s) 11, 248, 343, 356
ApeKI GCWGC 2 cut(s) 317, 320
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 3 cut(s) 230, 275, 344
AvaI CYCGRG 1 cut(s) 399
BaeGI GKGCMC 1 cut(s) 279
BalI TGGCCA 2 cut(s) 250, 345
BbsI GAAGAC 1 cut(s) 155
BbvCI CCTCAGC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 304, 332
BccI CCATC 5 cut(s) 52, 215, 259, 329, 371
BceAI ACGGC 2 cut(s) 105, 208
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 318
BfuAI ACCTGC 1 cut(s) 274
BisI GCNGC 5 cut(s) 5, 196, 236, 318, 321
BlsI GCNGC 5 cut(s) 6, 197, 237, 319, 322
Bme1390I CCNGG 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 14, 288
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 3 cut(s) 55, 278, 306
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 312, 377
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 3 cut(s) 55, 278, 306
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 3 cut(s) 33, 312, 377
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 279
BseXI GCAGC 2 cut(s) 304, 332
BshFI GGCC 4 cut(s) 13, 250, 345, 358
BsiHKCI CYCGRG 1 cut(s) 399
BslI CCNNNNNNNGG 3 cut(s) 33, 312, 377
BsmAI GTCTC 1 cut(s) 396
BsnI GGCC 4 cut(s) 13, 250, 345, 358
Bso31I GGTCTC 1 cut(s) 396
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 2 cut(s) 123, 240
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 4 cut(s) 4, 195, 235, 323
BspANI GGCC 4 cut(s) 13, 250, 345, 358
BspCNI CTCAG 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 14, 288
BspMAI CTGCAG 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 396
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 3 cut(s) 55, 278, 306
BssMI GATC 2 cut(s) 123, 240
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 353, 365
BstDSI CCRYGG 2 cut(s) 55, 306
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 2 cut(s) 126, 243
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 2 cut(s) 123, 240
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 304, 332
BstV2I GAAGAC 1 cut(s) 155
BsuRI GGCC 4 cut(s) 13, 250, 345, 358
BtgI CCRYGG 2 cut(s) 55, 306
BtsCI GGATG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 12
CseI GACGC 1 cut(s) 109
CviAII CATG 2 cut(s) 159, 307
DdeI CTNAG 2 cut(s) 353, 365
DpnI GATC 2 cut(s) 125, 242
DpnII GATC 2 cut(s) 123, 240
EaeI YGGCCR 2 cut(s) 248, 343
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 2 cut(s) 162, 310
FaiI YATR 5 cut(s) 160, 207, 209, 216, 308
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 2 cut(s) 158, 306
Fnu4HI GCNGC 5 cut(s) 5, 196, 236, 318, 321
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 5 cut(s) 5, 196, 236, 318, 321
GluI GCNGC 5 cut(s) 5, 196, 236, 318, 321
HaeIII GGCC 4 cut(s) 13, 250, 345, 358
HgaI GACGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 2 cut(s) 162, 310
HphI GGTGA 3 cut(s) 230, 275, 344
Hpy166II GTNNAC 2 cut(s) 59, 303
Hpy188I TCNGA 2 cut(s) 123, 291
Hpy188III TCNNGA 3 cut(s) 112, 173, 399
Hpy8I GTNNAC 2 cut(s) 59, 303
Hpy99I CGWCG 2 cut(s) 194, 332
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 2 cut(s) 320, 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 353, 365
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 2 cut(s) 162, 310
Kzo9I GATC 2 cut(s) 123, 240
LpnPI CCDG 6 cut(s) 19, 123, 265, 269, 292, 419
Lsp1109I GCAGC 2 cut(s) 304, 332
LweI GCATC 1 cut(s) 71
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 263
MalI GATC 2 cut(s) 125, 242
MboI GATC 2 cut(s) 123, 240
MboII GAAGA 3 cut(s) 126, 155, 424
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 279
MlsI TGGCCA 2 cut(s) 250, 345
MluCI AATT 2 cut(s) 93, 372
MluNI TGGCCA 2 cut(s) 250, 345
MmeI TCCRAC 1 cut(s) 314
MnlI CCTC 5 cut(s) 28, 34, 75, 220, 348
Mox20I TGGCCA 2 cut(s) 250, 345
MscI TGGCCA 2 cut(s) 250, 345
MseI TTAA 1 cut(s) 424
Msp20I TGGCCA 2 cut(s) 250, 345
MspA1I CMGCKG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 280
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 306
NdeII GATC 2 cut(s) 123, 240
NlaIII CATG 2 cut(s) 162, 310
NlaIV GGNNCC 2 cut(s) 14, 288
NmuCI GTSAC 1 cut(s) 263
NspI RCATGY 1 cut(s) 162
PcsI WCGNNNNNNNCGW 2 cut(s) 76, 267
PflMI CCANNNNNTGG 1 cut(s) 377
PkrI GCNGC 5 cut(s) 6, 197, 237, 319, 322
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 14, 288
PspPI GGNCC 1 cut(s) 12
PstI CTGCAG 1 cut(s) 322
SaqAI TTAA 1 cut(s) 424
SatI GCNGC 5 cut(s) 5, 196, 236, 318, 321
Sau3AI GATC 2 cut(s) 123, 240
Sau96I GGNCC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 1 cut(s) 279
SetI ASST 5 cut(s) 188, 288, 296, 330, 408
SfaNI GCATC 1 cut(s) 71
SfcI CTRYAG 1 cut(s) 318
Sse9I AATT 2 cut(s) 93, 372
SsiI CCGC 4 cut(s) 4, 195, 235, 323
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 1 cut(s) 330
TaqI TCGA 2 cut(s) 79, 189
TasI AATT 2 cut(s) 93, 372
TauI GCSGC 3 cut(s) 7, 198, 238
Tru1I TTAA 1 cut(s) 424
Tru9I TTAA 1 cut(s) 424
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 2 cut(s) 317, 320
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 224
Van91I CCANNNNNTGG 1 cut(s) 377
XceI RCATGY 1 cut(s) 162
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.