RLG00000014305

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005943
Physical Location & Seq
Reverse (-)
51016615 .. 51017024
410 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014305

Sequence Viewer

Length: 321 bp
ATGTGGAAGGCATGTTTTAACCATCGAGATTGGTTGACCTTCGACGGCGACCTTGCTTCTATGATCGATGGTGATGGTGAGGTTTGGCGGCAGATCAGTTGGCCATCTCCTATCAGTGACGTCATTGTGCCCCTGGCAGGTCCCGGCTTTGATGCTTACCATGGTCGGGGCTACAGCGGACGTCGGTTTGGGACTCAGGTATTAGCGATCTGCATCTCTTCTATGCCGGATTTTGGTGGTGTCTCCATCACCGTGAGAGTAGTCTCCGACCATATTCAAGGACAAGGAGGAGAAGTAGGGGCTTGGGTCATTGGGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.48

Weight (kDa)

5.03

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 123, 184
Acc36I ACCTGC 1 cut(s) 128
AciI CCGC 2 cut(s) 88, 177
AcoI YGGCCR 1 cut(s) 101
AcyI GRCGYC 2 cut(s) 120, 181
AfiI CCNNNNNNNGG 3 cut(s) 137, 166, 233
AgsI TTSAA 1 cut(s) 278
AjnI CCWGG 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 247, 268
AoxI GGCC 2 cut(s) 101, 314
AspS9I GGNCC 2 cut(s) 140, 314
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 3 cut(s) 83, 89, 241
AvaII GGWCC 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 132
BalI TGGCCA 1 cut(s) 103
BccI CCATC 5 cut(s) 30, 62, 68, 112, 254
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 134
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 247, 268
BfmI CTRYAG 1 cut(s) 172
BfuAI ACCTGC 1 cut(s) 128
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 2 cut(s) 134, 144
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 140, 314
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 2 cut(s) 134, 144
BmsI GCATC 2 cut(s) 142, 222
BpuMI CCSGG 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 212
BsaHI GRCGYC 2 cut(s) 120, 181
BsaJI CCNNGG 2 cut(s) 132, 160
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 166, 233
Bse8I GATNNNNATC 1 cut(s) 212
BseBI CCWGG 1 cut(s) 134
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 132, 160
BseJI GATNNNNATC 1 cut(s) 212
BseLI CCNNNNNNNGG 3 cut(s) 137, 166, 233
BseMII CTCAG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 132
BshFI GGCC 2 cut(s) 103, 316
BshVI ATCGAT 1 cut(s) 66
BsiSI CCGG 2 cut(s) 144, 227
BslFI GGGAC 2 cut(s) 126, 205
BslI CCNNNNNNNGG 3 cut(s) 137, 166, 233
BsmAI GTCTC 2 cut(s) 247, 268
BsmFI GGGAC 2 cut(s) 126, 205
BsnI GGCC 2 cut(s) 103, 316
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 63, 93, 207
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 2 cut(s) 88, 177
BspANI GGCC 2 cut(s) 103, 316
BspCNI CTCAG 1 cut(s) 208
BspDI ATCGAT 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 132, 160
BssMI GATC 3 cut(s) 63, 93, 207
BssNI GRCGYC 2 cut(s) 120, 181
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 223
BstACI GRCGYC 2 cut(s) 120, 181
BstDEI CTNAG 2 cut(s) 195, 318
BstDSI CCRYGG 1 cut(s) 160
BstKTI GATC 3 cut(s) 66, 96, 210
BstMAI GTCTC 2 cut(s) 247, 268
BstMBI GATC 3 cut(s) 63, 93, 207
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 132, 142
BstSFI CTRYAG 1 cut(s) 172
BstSLI GKGCMC 1 cut(s) 132
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 2 cut(s) 103, 316
BsuTUI ATCGAT 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 140, 314
ClaI ATCGAT 1 cut(s) 66
CviAII CATG 2 cut(s) 12, 161
CviJI RGCY 5 cut(s) 103, 147, 171, 302, 316
CviKI_1 RGCY 5 cut(s) 103, 147, 171, 302, 316
DdeI CTNAG 2 cut(s) 195, 318
DpnI GATC 3 cut(s) 65, 95, 209
DpnII GATC 3 cut(s) 63, 93, 207
EaeI YGGCCR 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 15, 164
FaiI YATR 5 cut(s) 13, 62, 162, 224, 273
FaqI GGGAC 2 cut(s) 126, 205
FatI CATG 2 cut(s) 11, 160
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 2 cut(s) 103, 316
HapII CCGG 2 cut(s) 144, 227
Hin1I GRCGYC 2 cut(s) 120, 181
Hin1II CATG 2 cut(s) 15, 164
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 1 cut(s) 193
HpaII CCGG 2 cut(s) 144, 227
HphI GGTGA 3 cut(s) 83, 89, 241
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 36
Hpy99I CGWCG 2 cut(s) 47, 186
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 2 cut(s) 120, 181
HpyCH4V TGCA 1 cut(s) 213
HpyF3I CTNAG 2 cut(s) 195, 318
HpySE526I ACGT 2 cut(s) 120, 181
Hsp92I GRCGYC 2 cut(s) 120, 181
Hsp92II CATG 2 cut(s) 15, 164
Kzo9I GATC 3 cut(s) 63, 93, 207
LpnPI CCDG 6 cut(s) 119, 123, 146, 157, 182, 240
LweI GCATC 2 cut(s) 142, 222
MaeII ACGT 2 cut(s) 120, 181
MaeIII GTNAC 1 cut(s) 116
MalI GATC 3 cut(s) 65, 95, 209
MboI GATC 3 cut(s) 63, 93, 207
MboII GAAGA 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 132
MlsI TGGCCA 1 cut(s) 103
MluNI TGGCCA 1 cut(s) 103
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 2 cut(s) 73, 281
Mox20I TGGCCA 1 cut(s) 103
MscI TGGCCA 1 cut(s) 103
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 251
Msp20I TGGCCA 1 cut(s) 103
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 2 cut(s) 144, 227
MspR9I CCNGG 2 cut(s) 134, 144
MvaI CCWGG 1 cut(s) 134
NciI CCSGG 1 cut(s) 144
NcoI CCATGG 1 cut(s) 160
NdeII GATC 3 cut(s) 63, 93, 207
NlaIII CATG 2 cut(s) 15, 164
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 116
NspI RCATGY 1 cut(s) 15
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PpuMI RGGWCCY 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 140, 314
PspPPI RGGWCCY 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 3 cut(s) 63, 93, 207
Sau96I GGNCC 2 cut(s) 140, 314
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 2 cut(s) 134, 144
SduI GDGCHC 1 cut(s) 132
SetI ASST 7 cut(s) 41, 54, 84, 123, 142, 184, 201
SfaNI GCATC 2 cut(s) 142, 222
SfcI CTRYAG 1 cut(s) 172
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 251
SsiI CCGC 2 cut(s) 88, 177
StyD4I CCNGG 2 cut(s) 132, 142
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 2 cut(s) 123, 184
TaqI TCGA 3 cut(s) 25, 42, 66
TauI GCSGC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 140
XceI RCATGY 1 cut(s) 15
ZraI GACGTC 2 cut(s) 121, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.